RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 EIF2AK4Q9P2K8 1649 aaKnown RBP29.82■■■□□ 2.36
UPF3A-211ENST00000618700 GCC2Q8IWJ2 1684 aa29.8■■■□□ 2.36
UPF3A-211ENST00000618700 HFM1A2PYH4 1435 aa29.79■■■□□ 2.36
UPF3A-211ENST00000618700 NAIPQ13075 1403 aa29.78■■■□□ 2.36
UPF3A-211ENST00000618700 ANKRD50Q9ULJ7 1429 aa29.77■■■□□ 2.36
UPF3A-211ENST00000618700 POTEDQ86YR6 584 aa29.76■■■□□ 2.35
UPF3A-211ENST00000618700 DMRT2Q9Y5R5 561 aa29.75■■■□□ 2.35
UPF3A-211ENST00000618700 RNF17Q9BXT8 1623 aaKnown RBP29.74■■■□□ 2.35
UPF3A-211ENST00000618700 ARID4BQ4LE39 1312 aaPredicted RBP29.74■■■□□ 2.35
UPF3A-211ENST00000618700 TRIM26Q12899 539 aaPredicted RBP29.74■■■□□ 2.35
UPF3A-211ENST00000618700 ADAMTSL3P82987 1691 aa29.69■■■□□ 2.34
UPF3A-211ENST00000618700 KIF3BO15066 747 aa29.69■■■□□ 2.34
UPF3A-211ENST00000618700 DEPDC5O75140 1603 aa29.69■■■□□ 2.34
UPF3A-211ENST00000618700 MROH1Q8NDA8 1641 aa29.69■■■□□ 2.34
UPF3A-211ENST00000618700 PRDM15P57071 1507 aaPredicted RBP29.66■■■□□ 2.34
UPF3A-211ENST00000618700 UNC13BO14795 1591 aa29.63■■■□□ 2.33
UPF3A-211ENST00000618700 FAM135AQ9P2D6 1515 aa29.62■■■□□ 2.33
UPF3A-211ENST00000618700 MLECQ14165 292 aa29.62■■■□□ 2.33
UPF3A-211ENST00000618700 GGT6Q6P531 493 aa29.6■■■□□ 2.33
UPF3A-211ENST00000618700 SETD5Q9C0A6 1442 aa29.6■■■□□ 2.33
UPF3A-211ENST00000618700 MADDQ8WXG6 1647 aa29.6■■■□□ 2.33
UPF3A-211ENST00000618700 VWDEQ8N2E2 1590 aa29.59■■■□□ 2.33
UPF3A-211ENST00000618700 FER1L4A9Z1Z3 1794 aa29.59■■■□□ 2.33
UPF3A-211ENST00000618700 KDM5DQ9BY66 1539 aa29.58■■■□□ 2.33
UPF3A-211ENST00000618700 CNKSR2Q8WXI2 1034 aa29.56■■■□□ 2.32
UPF3A-211ENST00000618700 ZC3H13Q5T200 1668 aaKnown RBP29.54■■■□□ 2.32
UPF3A-211ENST00000618700 ABCC3O15438 1527 aa29.54■■■□□ 2.32
UPF3A-211ENST00000618700 CNTLNQ9NXG0 1405 aa29.52■■■□□ 2.32
UPF3A-211ENST00000618700 RAB3GAP2Q9H2M9 1393 aa29.52■■■□□ 2.32
UPF3A-211ENST00000618700 CLTCQ00610 1675 aaKnown RBP29.51■■■□□ 2.31
UPF3A-211ENST00000618700 RIMS1Q86UR5 1692 aaKnown RBP29.51■■■□□ 2.31
UPF3A-211ENST00000618700 LMTK2Q8IWU2 1503 aa29.5■■■□□ 2.31
UPF3A-211ENST00000618700 IQGAP3Q86VI3 1631 aa29.5■■■□□ 2.31
UPF3A-211ENST00000618700 MROH2AA6NES4 1674 aa29.5■■■□□ 2.31
UPF3A-211ENST00000618700 KANK1Q14678 1352 aa29.49■■■□□ 2.31
UPF3A-211ENST00000618700 CEP152O94986 1710 aa29.48■■■□□ 2.31
UPF3A-211ENST00000618700 PTPRMP28827 1452 aa29.48■■■□□ 2.31
UPF3A-211ENST00000618700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.47■■■□□ 2.311e-8■■■■■ 27.4
UPF3A-211ENST00000618700 WASHC2CQ9Y4E1 1318 aa29.45■■■□□ 2.31
UPF3A-211ENST00000618700 NCBP3Q53F19 620 aaKnown RBP29.45■■■□□ 2.31
UPF3A-211ENST00000618700 NUP155O75694 1391 aa29.44■■■□□ 2.3
UPF3A-211ENST00000618700 CAMSAP1Q5T5Y3 1602 aa29.43■■■□□ 2.3
UPF3A-211ENST00000618700 ESF1Q9H501 851 aaKnown RBP29.43■■■□□ 2.3
UPF3A-211ENST00000618700 HRCP23327 699 aa29.42■■■□□ 2.3
UPF3A-211ENST00000618700 TET3O43151 1660 aa29.41■■■□□ 2.3
UPF3A-211ENST00000618700 ACIN1Q9UKV3 1341 aaKnown RBP29.41■■■□□ 2.3
UPF3A-211ENST00000618700 EFCAB6Q5THR3 1501 aa29.4■■■□□ 2.3
UPF3A-211ENST00000618700 PZPP20742 1482 aa29.4■■■□□ 2.3
UPF3A-211ENST00000618700 C3P01024 1663 aa29.4■■■□□ 2.3
UPF3A-211ENST00000618700 KCNA4P22459 653 aa29.39■■■□□ 2.3
UPF3A-211ENST00000618700 ZMYM3Q14202 1370 aa29.39■■■□□ 2.29
UPF3A-211ENST00000618700 PCGF6Q9BYE7 350 aa29.38■■■□□ 2.29
UPF3A-211ENST00000618700 ARHGAP31Q2M1Z3 1444 aa29.37■■■□□ 2.29
UPF3A-211ENST00000618700 TRIM52Q96A61 297 aa29.35■■■□□ 2.29
UPF3A-211ENST00000618700 NPATQ14207 1427 aa29.34■■■□□ 2.29
UPF3A-211ENST00000618700 E9PCH4 1651 aa29.31■■■□□ 2.28
UPF3A-211ENST00000618700 RPRD2Q5VT52 1461 aaKnown RBP29.3■■■□□ 2.28
UPF3A-211ENST00000618700 CEBPAP49715 358 aaPredicted RBP29.28■■■□□ 2.28
UPF3A-211ENST00000618700 ERVK-7P63135 1459 aa29.26■■■□□ 2.27
UPF3A-211ENST00000618700 SPATA31D1Q6ZQQ2 1576 aa29.26■■■□□ 2.27
UPF3A-211ENST00000618700 PREX1Q8TCU6 1659 aa29.25■■■□□ 2.27
UPF3A-211ENST00000618700 SLC4A1APQ9BWU0 796 aaKnown RBP29.25■■■□□ 2.27
UPF3A-211ENST00000618700 MPHOSPH9Q99550 1183 aa29.22■■■□□ 2.27
UPF3A-211ENST00000618700 FBXO31Q5XUX0 539 aaPredicted RBP29.21■■■□□ 2.27
UPF3A-211ENST00000618700 NOS1P29475 1434 aa29.2■■■□□ 2.27
UPF3A-211ENST00000618700 PKD2Q13563 968 aa29.19■■■□□ 2.26
UPF3A-211ENST00000618700 SYNMO15061 1565 aa29.17■■■□□ 2.26
UPF3A-211ENST00000618700 TNRQ92752 1358 aa29.16■■■□□ 2.26
UPF3A-211ENST00000618700 PTPRTO14522 1441 aa29.16■■■□□ 2.26
UPF3A-211ENST00000618700 CFAP65Q6ZU64 1925 aaKnown RBP29.16■■■□□ 2.26
UPF3A-211ENST00000618700 SPHKAPQ2M3C7 1700 aa29.14■■■□□ 2.26
UPF3A-211ENST00000618700 MYO3AQ8NEV4 1616 aa29.13■■■□□ 2.25
UPF3A-211ENST00000618700 LMTK3Q96Q04 1460 aa29.13■■■□□ 2.25
UPF3A-211ENST00000618700 SETD1BQ9UPS6 1966 aaKnown RBP29.12■■■□□ 2.25
UPF3A-211ENST00000618700 PLA2R1Q13018 1463 aa29.11■■■□□ 2.25
UPF3A-211ENST00000618700 TRPM2O94759 1503 aa29.11■■■□□ 2.25
UPF3A-211ENST00000618700 NPM3O75607 178 aaKnown RBP29.09■■■□□ 2.25
UPF3A-211ENST00000618700 NLRP1Q9C000 1473 aa29.09■■■□□ 2.25
UPF3A-211ENST00000618700 PIK3C2BO00750 1634 aa29.09■■■□□ 2.25
UPF3A-211ENST00000618700 ZNF142P52746 1687 aaPredicted RBP29.07■■■□□ 2.24
UPF3A-211ENST00000618700 DHX57Q6P158 1386 aaKnown RBP29.07■■■□□ 2.24
UPF3A-211ENST00000618700 RNF216Q9NWF9 866 aaPredicted RBP29.05■■■□□ 2.24
UPF3A-211ENST00000618700 UGGT1Q9NYU2 1555 aa29.05■■■□□ 2.24
UPF3A-211ENST00000618700 UHRF1BP1Q6BDS2 1440 aa29.04■■■□□ 2.24
UPF3A-211ENST00000618700 CEP170BQ9Y4F5 1589 aaPredicted RBP29.03■■■□□ 2.24
UPF3A-211ENST00000618700 HOXD11P31277 338 aaPredicted RBP29.02■■■□□ 2.24
UPF3A-211ENST00000618700 A2ML1A8K2U0 1454 aa29.02■■■□□ 2.24
UPF3A-211ENST00000618700 CLTCL1P53675 1640 aa29.02■■■□□ 2.24
UPF3A-211ENST00000618700 ANKRD30BQ9BXX2 1392 aa29.01■■■□□ 2.23
UPF3A-211ENST00000618700 SLC52A1Q9NWF4 448 aa29■■■□□ 2.23
UPF3A-211ENST00000618700 KDM5AP29375 1690 aaKnown RBP28.97■■■□□ 2.23
UPF3A-211ENST00000618700 IDI1Q13907 227 aa28.97■■■□□ 2.23
UPF3A-211ENST00000618700 ADGRB3O60242 1522 aa28.96■■■□□ 2.23
UPF3A-211ENST00000618700 CCDC144AA2RUR9 1427 aa28.94■■■□□ 2.22
UPF3A-211ENST00000618700 UBR1Q8IWV7 1749 aa28.94■■■□□ 2.22
UPF3A-211ENST00000618700 TMEM131LA2VDJ0 1609 aa28.92■■■□□ 2.22
UPF3A-211ENST00000618700 HSPA2P54652 639 aa28.87■■■□□ 2.21
UPF3A-211ENST00000618700 KIF1BO60333 1816 aa28.87■■■□□ 2.21
UPF3A-211ENST00000618700 NEURL4Q96JN8 1562 aa28.86■■■□□ 2.21
UPF3A-211ENST00000618700 MYO5BQ9ULV0 1848 aa28.85■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms