RNA–Protein interactions for RNA: ENST00000617222.4

PCDHGC3-204, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 3 BASIC

Gene PCDHGC3, Length 731 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-204ENST00000617222 GCC2Q8IWJ2 1684 aa23.28■■□□□ 1.32
PCDHGC3-204ENST00000617222 TRIM52Q96A61 297 aa23.28■■□□□ 1.32
PCDHGC3-204ENST00000617222 ESF1Q9H501 851 aaKnown RBP23.28■■□□□ 1.32
PCDHGC3-204ENST00000617222 WASHC2CQ9Y4E1 1318 aa23.27■■□□□ 1.32
PCDHGC3-204ENST00000617222 NUP155O75694 1391 aa23.25■■□□□ 1.31
PCDHGC3-204ENST00000617222 KANK1Q14678 1352 aa23.25■■□□□ 1.31
PCDHGC3-204ENST00000617222 BCORL1Q5H9F3 1711 aa23.25■■□□□ 1.31
PCDHGC3-204ENST00000617222 HRCP23327 699 aa23.24■■□□□ 1.31
PCDHGC3-204ENST00000617222 KDM4FA0A1W2PPD8 638 aa23.23■■□□□ 1.31
PCDHGC3-204ENST00000617222 RNF17Q9BXT8 1623 aaKnown RBP23.22■■□□□ 1.31
PCDHGC3-204ENST00000617222 MROH1Q8NDA8 1641 aa23.2■■□□□ 1.3
PCDHGC3-204ENST00000617222 ACIN1Q9UKV3 1341 aaKnown RBP23.19■■□□□ 1.3
PCDHGC3-204ENST00000617222 PRDM15P57071 1507 aaPredicted RBP23.18■■□□□ 1.3
PCDHGC3-204ENST00000617222 DEPDC5O75140 1603 aa23.18■■□□□ 1.3
PCDHGC3-204ENST00000617222 ADAMTSL3P82987 1691 aa23.17■■□□□ 1.3
PCDHGC3-204ENST00000617222 UNC13BO14795 1591 aa23.17■■□□□ 1.3
PCDHGC3-204ENST00000617222 PLPPR3Q6T4P5 718 aa23.16■■□□□ 1.3
PCDHGC3-204ENST00000617222 CNTLNQ9NXG0 1405 aa23.16■■□□□ 1.3
PCDHGC3-204ENST00000617222 ZMYM3Q14202 1370 aa23.15■■□□□ 1.3
PCDHGC3-204ENST00000617222 VWDEQ8N2E2 1590 aa23.14■■□□□ 1.3
PCDHGC3-204ENST00000617222 ABCC3O15438 1527 aa23.14■■□□□ 1.3
PCDHGC3-204ENST00000617222 KDM5DQ9BY66 1539 aa23.14■■□□□ 1.3
PCDHGC3-204ENST00000617222 SLC4A1APQ9BWU0 796 aaKnown RBP23.14■■□□□ 1.29
PCDHGC3-204ENST00000617222 MADDQ8WXG6 1647 aa23.14■■□□□ 1.29
PCDHGC3-204ENST00000617222 CEBPAP49715 358 aaPredicted RBP23.13■■□□□ 1.29
PCDHGC3-204ENST00000617222 MPHOSPH9Q99550 1183 aa23.12■■□□□ 1.29
PCDHGC3-204ENST00000617222 FAM135AQ9P2D6 1515 aa23.11■■□□□ 1.29
PCDHGC3-204ENST00000617222 FER1L4A9Z1Z3 1794 aa23.1■■□□□ 1.29
PCDHGC3-204ENST00000617222 CLTCQ00610 1675 aaKnown RBP23.09■■□□□ 1.29
PCDHGC3-204ENST00000617222 LMTK2Q8IWU2 1503 aa23.09■■□□□ 1.29
PCDHGC3-204ENST00000617222 PKD2Q13563 968 aa23.09■■□□□ 1.29
PCDHGC3-204ENST00000617222 PZPP20742 1482 aa23.09■■□□□ 1.29
PCDHGC3-204ENST00000617222 IQGAP3Q86VI3 1631 aa23.08■■□□□ 1.29
PCDHGC3-204ENST00000617222 RIMS1Q86UR5 1692 aaKnown RBP23.08■■□□□ 1.29
PCDHGC3-204ENST00000617222 FBXO31Q5XUX0 539 aaPredicted RBP23.07■■□□□ 1.28
PCDHGC3-204ENST00000617222 CEP152O94986 1710 aa23.07■■□□□ 1.28
PCDHGC3-204ENST00000617222 PTPRMP28827 1452 aa23.06■■□□□ 1.28
PCDHGC3-204ENST00000617222 ZC3H13Q5T200 1668 aaKnown RBP23.05■■□□□ 1.28
PCDHGC3-204ENST00000617222 FOXD1Q16676 465 aa23.04■■□□□ 1.28
PCDHGC3-204ENST00000617222 NPATQ14207 1427 aa23.04■■□□□ 1.28
PCDHGC3-204ENST00000617222 ARHGAP31Q2M1Z3 1444 aa23.04■■□□□ 1.28
PCDHGC3-204ENST00000617222 CAMSAP1Q5T5Y3 1602 aa23.02■■□□□ 1.28
PCDHGC3-204ENST00000617222 TET3O43151 1660 aa23.01■■□□□ 1.27
PCDHGC3-204ENST00000617222 EFCAB6Q5THR3 1501 aa23.01■■□□□ 1.27
PCDHGC3-204ENST00000617222 MROH2AA6NES4 1674 aa23■■□□□ 1.27
PCDHGC3-204ENST00000617222 C3P01024 1663 aa22.97■■□□□ 1.27
PCDHGC3-204ENST00000617222 RPRD2Q5VT52 1461 aaKnown RBP22.97■■□□□ 1.27
PCDHGC3-204ENST00000617222 E9PCH4 1651 aa22.95■■□□□ 1.26
PCDHGC3-204ENST00000617222 ERVK-7P63135 1459 aa22.95■■□□□ 1.26
PCDHGC3-204ENST00000617222 DHX57Q6P158 1386 aaKnown RBP22.94■■□□□ 1.26
PCDHGC3-204ENST00000617222 TNRQ92752 1358 aa22.94■■□□□ 1.26
PCDHGC3-204ENST00000617222 NOS1P29475 1434 aa22.93■■□□□ 1.26
PCDHGC3-204ENST00000617222 CFAP65Q6ZU64 1925 aaKnown RBP22.92■■□□□ 1.26
PCDHGC3-204ENST00000617222 PTPRTO14522 1441 aa22.91■■□□□ 1.26
PCDHGC3-204ENST00000617222 SPATA31D1Q6ZQQ2 1576 aa22.9■■□□□ 1.26
PCDHGC3-204ENST00000617222 PLA2R1Q13018 1463 aa22.89■■□□□ 1.25
PCDHGC3-204ENST00000617222 IDI1Q13907 227 aa22.88■■□□□ 1.25
PCDHGC3-204ENST00000617222 SLC52A1Q9NWF4 448 aa22.88■■□□□ 1.25
PCDHGC3-204ENST00000617222 PREX1Q8TCU6 1659 aa22.87■■□□□ 1.25
PCDHGC3-204ENST00000617222 ANKRD30BQ9BXX2 1392 aa22.87■■□□□ 1.25
PCDHGC3-204ENST00000617222 AEBP2Q6ZN18 517 aaPredicted RBP22.86■■□□□ 1.25
PCDHGC3-204ENST00000617222 SYNMO15061 1565 aa22.84■■□□□ 1.25
PCDHGC3-204ENST00000617222 CHGAP10645 457 aaKnown RBP22.82■■□□□ 1.24
PCDHGC3-204ENST00000617222 CCER1Q8TC90 406 aaPredicted RBP22.81■■□□□ 1.24
PCDHGC3-204ENST00000617222 STAG3Q9UJ98 1225 aa22.81■■□□□ 1.24
PCDHGC3-204ENST00000617222 SETD1BQ9UPS6 1966 aaKnown RBP22.81■■□□□ 1.24
PCDHGC3-204ENST00000617222 UGGT1Q9NYU2 1555 aa22.8■■□□□ 1.24
PCDHGC3-204ENST00000617222 NLRP1Q9C000 1473 aa22.8■■□□□ 1.24
PCDHGC3-204ENST00000617222 TRPM2O94759 1503 aa22.8■■□□□ 1.24
PCDHGC3-204ENST00000617222 CCDC144AA2RUR9 1427 aa22.8■■□□□ 1.24
PCDHGC3-204ENST00000617222 UHRF1BP1Q6BDS2 1440 aa22.8■■□□□ 1.24
PCDHGC3-204ENST00000617222 SPHKAPQ2M3C7 1700 aa22.79■■□□□ 1.24
PCDHGC3-204ENST00000617222 SIN3AQ96ST3 1273 aa22.78■■□□□ 1.24
PCDHGC3-204ENST00000617222 A2ML1A8K2U0 1454 aa22.76■■□□□ 1.23
PCDHGC3-204ENST00000617222 NEUROD1Q13562 356 aa22.74■■□□□ 1.23
PCDHGC3-204ENST00000617222 THEMISQ8N1K5 641 aaPredicted RBP22.74■■□□□ 1.23
PCDHGC3-204ENST00000617222 CLTCL1P53675 1640 aa22.74■■□□□ 1.23
PCDHGC3-204ENST00000617222 MYO3AQ8NEV4 1616 aa22.74■■□□□ 1.23
PCDHGC3-204ENST00000617222 PIK3C2BO00750 1634 aa22.72■■□□□ 1.23
PCDHGC3-204ENST00000617222 HSPA2P54652 639 aa22.71■■□□□ 1.23
PCDHGC3-204ENST00000617222 RGL3Q3MIN7 710 aa22.71■■□□□ 1.23
PCDHGC3-204ENST00000617222 ZNF326Q5BKZ1 582 aaKnown RBP22.71■■□□□ 1.23
PCDHGC3-204ENST00000617222 CEP170BQ9Y4F5 1589 aaPredicted RBP22.71■■□□□ 1.23
PCDHGC3-204ENST00000617222 LMTK3Q96Q04 1460 aa22.69■■□□□ 1.22
PCDHGC3-204ENST00000617222 CLSPNQ9HAW4 1339 aa22.68■■□□□ 1.22
PCDHGC3-204ENST00000617222 ADGRB3O60242 1522 aa22.67■■□□□ 1.22
PCDHGC3-204ENST00000617222 SPATA31E1Q6ZUB1 1445 aa22.65■■□□□ 1.22
PCDHGC3-204ENST00000617222 TMEM131LA2VDJ0 1609 aa22.64■■□□□ 1.22
PCDHGC3-204ENST00000617222 TMEM2Q9UHN6 1383 aa22.64■■□□□ 1.22
PCDHGC3-204ENST00000617222 ZNF142P52746 1687 aaPredicted RBP22.64■■□□□ 1.21
PCDHGC3-204ENST00000617222 UBR1Q8IWV7 1749 aa22.63■■□□□ 1.21
PCDHGC3-204ENST00000617222 NUTM2DQ5VT03 806 aaPredicted RBP22.63■■□□□ 1.21
PCDHGC3-204ENST00000617222 TXNDC2Q86VQ3 553 aa22.62■■□□□ 1.21
PCDHGC3-204ENST00000617222 ANKLE2Q86XL3 938 aa22.62■■□□□ 1.21
PCDHGC3-204ENST00000617222 RPGRIP1LQ68CZ1 1315 aa22.61■■□□□ 1.21
PCDHGC3-204ENST00000617222 LTKP29376 864 aa22.61■■□□□ 1.21
PCDHGC3-204ENST00000617222 HDGFP51858 240 aaKnown RBP22.61■■□□□ 1.21
PCDHGC3-204ENST00000617222 EID1Q9Y6B2 187 aa22.61■■□□□ 1.21
PCDHGC3-204ENST00000617222 KIF1BO60333 1816 aa22.61■■□□□ 1.21
PCDHGC3-204ENST00000617222 RIMS2Q9UQ26 1411 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms