RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.82■■□□□ 1.08
CD48-203ENST00000613788 BCORL1Q5H9F3 1711 aa21.81■■□□□ 1.08
CD48-203ENST00000613788 PPP6R1Q9UPN7 881 aa21.81■■□□□ 1.08
CD48-203ENST00000613788 KANK1Q14678 1352 aa21.8■■□□□ 1.08
CD48-203ENST00000613788 MLECQ14165 292 aa21.8■■□□□ 1.08
CD48-203ENST00000613788 NUP155O75694 1391 aa21.79■■□□□ 1.08
CD48-203ENST00000613788 SIGLEC1Q9BZZ2 1709 aa21.78■■□□□ 1.08
CD48-203ENST00000613788 RNF17Q9BXT8 1623 aaKnown RBP21.77■■□□□ 1.08
CD48-203ENST00000613788 UNC13BO14795 1591 aa21.75■■□□□ 1.07
CD48-203ENST00000613788 DEPDC5O75140 1603 aa21.75■■□□□ 1.07
CD48-203ENST00000613788 ESF1Q9H501 851 aaKnown RBP21.75■■□□□ 1.07
CD48-203ENST00000613788 WASHC2CQ9Y4E1 1318 aa21.75■■□□□ 1.07
CD48-203ENST00000613788 PRDM15P57071 1507 aaPredicted RBP21.74■■□□□ 1.07
CD48-203ENST00000613788 MROH1Q8NDA8 1641 aa21.72■■□□□ 1.07
CD48-203ENST00000613788 SLC4A1APQ9BWU0 796 aaKnown RBP21.71■■□□□ 1.07
CD48-203ENST00000613788 KDM5DQ9BY66 1539 aa21.7■■□□□ 1.07
CD48-203ENST00000613788 MPHOSPH9Q99550 1183 aa21.7■■□□□ 1.06
CD48-203ENST00000613788 FAM135AQ9P2D6 1515 aa21.69■■□□□ 1.06
CD48-203ENST00000613788 VWDEQ8N2E2 1590 aa21.69■■□□□ 1.06
CD48-203ENST00000613788 IQGAP3Q86VI3 1631 aa21.67■■□□□ 1.06
CD48-203ENST00000613788 CNTLNQ9NXG0 1405 aa21.66■■□□□ 1.06
CD48-203ENST00000613788 PZPP20742 1482 aa21.66■■□□□ 1.06
CD48-203ENST00000613788 LMTK2Q8IWU2 1503 aa21.66■■□□□ 1.06
CD48-203ENST00000613788 ABCC3O15438 1527 aa21.65■■□□□ 1.06
CD48-203ENST00000613788 ZC3H13Q5T200 1668 aaKnown RBP21.64■■□□□ 1.05
CD48-203ENST00000613788 PKD2Q13563 968 aa21.63■■□□□ 1.05
CD48-203ENST00000613788 TET3O43151 1660 aa21.6■■□□□ 1.05
CD48-203ENST00000613788 ZMYM3Q14202 1370 aa21.6■■□□□ 1.05
CD48-203ENST00000613788 DHX57Q6P158 1386 aaKnown RBP21.6■■□□□ 1.05
CD48-203ENST00000613788 CEP152O94986 1710 aa21.6■■□□□ 1.05
CD48-203ENST00000613788 ADAMTSL3P82987 1691 aa21.59■■□□□ 1.05
CD48-203ENST00000613788 ARHGAP31Q2M1Z3 1444 aa21.59■■□□□ 1.05
CD48-203ENST00000613788 CLTCQ00610 1675 aaKnown RBP21.59■■□□□ 1.05
CD48-203ENST00000613788 FER1L4A9Z1Z3 1794 aa21.57■■□□□ 1.04
CD48-203ENST00000613788 EFCAB6Q5THR3 1501 aa21.57■■□□□ 1.04
CD48-203ENST00000613788 CAMSAP1Q5T5Y3 1602 aa21.56■■□□□ 1.04
CD48-203ENST00000613788 RPRD2Q5VT52 1461 aaKnown RBP21.56■■□□□ 1.04
CD48-203ENST00000613788 MADDQ8WXG6 1647 aa21.56■■□□□ 1.04
CD48-203ENST00000613788 NPATQ14207 1427 aa21.55■■□□□ 1.04
CD48-203ENST00000613788 FOXD1Q16676 465 aa21.55■■□□□ 1.04
CD48-203ENST00000613788 CCER1Q8TC90 406 aaPredicted RBP21.54■■□□□ 1.04
CD48-203ENST00000613788 MROH2AA6NES4 1674 aa21.54■■□□□ 1.04
CD48-203ENST00000613788 KDM4FA0A1W2PPD8 638 aa21.51■■□□□ 1.03
CD48-203ENST00000613788 E9PCH4 1651 aa21.51■■□□□ 1.03
CD48-203ENST00000613788 RIMS1Q86UR5 1692 aaKnown RBP21.5■■□□□ 1.03
CD48-203ENST00000613788 CEBPAP49715 358 aaPredicted RBP21.5■■□□□ 1.03
CD48-203ENST00000613788 FBXO31Q5XUX0 539 aaPredicted RBP21.5■■□□□ 1.03
CD48-203ENST00000613788 PLPPR3Q6T4P5 718 aa21.48■■□□□ 1.03
CD48-203ENST00000613788 CLSPNQ9HAW4 1339 aa21.47■■□□□ 1.03
CD48-203ENST00000613788 PTPRTO14522 1441 aa21.47■■□□□ 1.03
CD48-203ENST00000613788 ANKRD30BQ9BXX2 1392 aa21.47■■□□□ 1.03
CD48-203ENST00000613788 PTPRMP28827 1452 aa21.46■■□□□ 1.03
CD48-203ENST00000613788 NOS1P29475 1434 aa21.46■■□□□ 1.03
CD48-203ENST00000613788 C3P01024 1663 aa21.45■■□□□ 1.02
CD48-203ENST00000613788 ERVK-7P63135 1459 aa21.45■■□□□ 1.02
CD48-203ENST00000613788 SLC52A1Q9NWF4 448 aa21.44■■□□□ 1.02
CD48-203ENST00000613788 PLA2R1Q13018 1463 aa21.43■■□□□ 1.02
CD48-203ENST00000613788 SPATA31D1Q6ZQQ2 1576 aa21.43■■□□□ 1.02
CD48-203ENST00000613788 PREX1Q8TCU6 1659 aa21.42■■□□□ 1.02
CD48-203ENST00000613788 TNRQ92752 1358 aa21.42■■□□□ 1.02
CD48-203ENST00000613788 CFAP65Q6ZU64 1925 aaKnown RBP21.41■■□□□ 1.02
CD48-203ENST00000613788 SPHKAPQ2M3C7 1700 aa21.41■■□□□ 1.02
CD48-203ENST00000613788 TRPM2O94759 1503 aa21.4■■□□□ 1.02
CD48-203ENST00000613788 CCDC144AA2RUR9 1427 aa21.4■■□□□ 1.02
CD48-203ENST00000613788 IDI1Q13907 227 aa21.38■■□□□ 1.01
CD48-203ENST00000613788 SIN3AQ96ST3 1273 aa21.36■■□□□ 1.01
CD48-203ENST00000613788 SYNMO15061 1565 aa21.36■■□□□ 1.01
CD48-203ENST00000613788 NEUROD1Q13562 356 aa21.34■■□□□ 1.01
CD48-203ENST00000613788 NLRP1Q9C000 1473 aa21.33■■□□□ 1.01
CD48-203ENST00000613788 STAG3Q9UJ98 1225 aa21.33■■□□□ 1
CD48-203ENST00000613788 CHGAP10645 457 aaKnown RBP21.32■■□□□ 1
CD48-203ENST00000613788 UGGT1Q9NYU2 1555 aa21.31■■□□□ 1
CD48-203ENST00000613788 PIK3C2BO00750 1634 aa21.31■■□□□ 1
CD48-203ENST00000613788 CLTCL1P53675 1640 aa21.31■■□□□ 1
CD48-203ENST00000613788 SETD1BQ9UPS6 1966 aaKnown RBP21.3■■□□□ 1
CD48-203ENST00000613788 UHRF1BP1Q6BDS2 1440 aa21.27■■□□□ 1
CD48-203ENST00000613788 A2ML1A8K2U0 1454 aa21.25■□□□□ 0.99
CD48-203ENST00000613788 RGL3Q3MIN7 710 aa21.25■□□□□ 0.99
CD48-203ENST00000613788 ZNF326Q5BKZ1 582 aaKnown RBP21.24■□□□□ 0.99
CD48-203ENST00000613788 THEMISQ8N1K5 641 aaPredicted RBP21.24■□□□□ 0.99
CD48-203ENST00000613788 TIMELESSQ9UNS1 1208 aa21.24■□□□□ 0.99
CD48-203ENST00000613788 MYO3AQ8NEV4 1616 aa21.24■□□□□ 0.99
CD48-203ENST00000613788 KIF1BO60333 1816 aa21.24■□□□□ 0.99
CD48-203ENST00000613788 SPATA31E1Q6ZUB1 1445 aa21.24■□□□□ 0.99
CD48-203ENST00000613788 TONSLQ96HA7 1378 aa21.23■□□□□ 0.99
CD48-203ENST00000613788 NEURL4Q96JN8 1562 aa21.22■□□□□ 0.99
CD48-203ENST00000613788 ADGRB3O60242 1522 aa21.22■□□□□ 0.99
CD48-203ENST00000613788 RPGRIP1LQ68CZ1 1315 aa21.22■□□□□ 0.99
CD48-203ENST00000613788 CEP170BQ9Y4F5 1589 aaPredicted RBP21.21■□□□□ 0.99
CD48-203ENST00000613788 TMEM131LA2VDJ0 1609 aa21.21■□□□□ 0.99
CD48-203ENST00000613788 KDM5AP29375 1690 aaKnown RBP21.2■□□□□ 0.98
CD48-203ENST00000613788 HDGFP51858 240 aaKnown RBP21.19■□□□□ 0.98
CD48-203ENST00000613788 L3MBTL2Q969R5 705 aa21.19■□□□□ 0.98
CD48-203ENST00000613788 STAC3Q96MF2 364 aa21.19■□□□□ 0.98
CD48-203ENST00000613788 UBR1Q8IWV7 1749 aa21.17■□□□□ 0.98
CD48-203ENST00000613788 DCAF11Q8TEB1 546 aa21.17■□□□□ 0.98
CD48-203ENST00000613788 ZNF142P52746 1687 aaPredicted RBP21.17■□□□□ 0.98
CD48-203ENST00000613788 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.16■□□□□ 0.98
CD48-203ENST00000613788 TMEM2Q9UHN6 1383 aa21.16■□□□□ 0.98
CD48-203ENST00000613788 VGFO15240 615 aaPredicted RBP21.14■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms