RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RNF17Q9BXT8 1623 aaKnown RBP25.12■■□□□ 1.61
CCDC28A-202ENST00000611852 ESF1Q9H501 851 aaKnown RBP25.12■■□□□ 1.61
CCDC28A-202ENST00000611852 CNTLNQ9NXG0 1405 aa25.11■■□□□ 1.61
CCDC28A-202ENST00000611852 ANKRD50Q9ULJ7 1429 aa25.1■■□□□ 1.61
CCDC28A-202ENST00000611852 MROH1Q8NDA8 1641 aa25.08■■□□□ 1.61
CCDC28A-202ENST00000611852 CLTCQ00610 1675 aaKnown RBP25.07■■□□□ 1.6
CCDC28A-202ENST00000611852 FAM135AQ9P2D6 1515 aa25.06■■□□□ 1.6
CCDC28A-202ENST00000611852 MROH2AA6NES4 1674 aa25.05■■□□□ 1.6
CCDC28A-202ENST00000611852 CEBPAP49715 358 aaPredicted RBP25.05■■□□□ 1.6
CCDC28A-202ENST00000611852 DEPDC5O75140 1603 aa25.05■■□□□ 1.6
CCDC28A-202ENST00000611852 KDM5DQ9BY66 1539 aa25.05■■□□□ 1.6
CCDC28A-202ENST00000611852 PLPPR3Q6T4P5 718 aa25.04■■□□□ 1.6
CCDC28A-202ENST00000611852 PRDM15P57071 1507 aaPredicted RBP25.04■■□□□ 1.6
CCDC28A-202ENST00000611852 WASHC2CQ9Y4E1 1318 aa25.04■■□□□ 1.6
CCDC28A-202ENST00000611852 ZMYM3Q14202 1370 aa25.03■■□□□ 1.6
CCDC28A-202ENST00000611852 C3P01024 1663 aa25.03■■□□□ 1.6
CCDC28A-202ENST00000611852 ABCC3O15438 1527 aa25■■□□□ 1.59
CCDC28A-202ENST00000611852 NAIPQ13075 1403 aa24.99■■□□□ 1.59
CCDC28A-202ENST00000611852 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.99■■□□□ 1.59
CCDC28A-202ENST00000611852 ZC3H13Q5T200 1668 aaKnown RBP24.99■■□□□ 1.59
CCDC28A-202ENST00000611852 HFM1A2PYH4 1435 aa24.98■■□□□ 1.59
CCDC28A-202ENST00000611852 GCC2Q8IWJ2 1684 aa24.97■■□□□ 1.59
CCDC28A-202ENST00000611852 KANK1Q14678 1352 aa24.96■■□□□ 1.59
CCDC28A-202ENST00000611852 VWDEQ8N2E2 1590 aa24.95■■□□□ 1.59
CCDC28A-202ENST00000611852 CEP152O94986 1710 aa24.95■■□□□ 1.59
CCDC28A-202ENST00000611852 UNC13BO14795 1591 aa24.93■■□□□ 1.58
CCDC28A-202ENST00000611852 PZPP20742 1482 aa24.91■■□□□ 1.58
CCDC28A-202ENST00000611852 NPATQ14207 1427 aa24.91■■□□□ 1.58
CCDC28A-202ENST00000611852 CAMSAP1Q5T5Y3 1602 aa24.91■■□□□ 1.58
CCDC28A-202ENST00000611852 LMTK2Q8IWU2 1503 aa24.9■■□□□ 1.58
CCDC28A-202ENST00000611852 SETD1BQ9UPS6 1966 aaKnown RBP24.89■■□□□ 1.58
CCDC28A-202ENST00000611852 FBXO31Q5XUX0 539 aaPredicted RBP24.86■■□□□ 1.57
CCDC28A-202ENST00000611852 ARHGAP31Q2M1Z3 1444 aa24.86■■□□□ 1.57
CCDC28A-202ENST00000611852 NUP155O75694 1391 aa24.85■■□□□ 1.57
CCDC28A-202ENST00000611852 PREX1Q8TCU6 1659 aa24.85■■□□□ 1.57
CCDC28A-202ENST00000611852 LMTK3Q96Q04 1460 aa24.84■■□□□ 1.57
CCDC28A-202ENST00000611852 IQGAP3Q86VI3 1631 aa24.84■■□□□ 1.57
CCDC28A-202ENST00000611852 EFCAB6Q5THR3 1501 aa24.82■■□□□ 1.56
CCDC28A-202ENST00000611852 UHRF1BP1Q6BDS2 1440 aa24.81■■□□□ 1.56
CCDC28A-202ENST00000611852 TET3O43151 1660 aa24.81■■□□□ 1.56
CCDC28A-202ENST00000611852 TNRQ92752 1358 aa24.79■■□□□ 1.56
CCDC28A-202ENST00000611852 SPATA31D1Q6ZQQ2 1576 aa24.79■■□□□ 1.56
CCDC28A-202ENST00000611852 SETD5Q9C0A6 1442 aa24.79■■□□□ 1.56
CCDC28A-202ENST00000611852 ERVK-7P63135 1459 aa24.79■■□□□ 1.56
CCDC28A-202ENST00000611852 CFAP65Q6ZU64 1925 aaKnown RBP24.79■■□□□ 1.56
CCDC28A-202ENST00000611852 MYO3AQ8NEV4 1616 aa24.77■■□□□ 1.56
CCDC28A-202ENST00000611852 RPRD2Q5VT52 1461 aaKnown RBP24.75■■□□□ 1.55
CCDC28A-202ENST00000611852 TRIM52Q96A61 297 aa24.74■■□□□ 1.55
CCDC28A-202ENST00000611852 E9PCH4 1651 aa24.72■■□□□ 1.55
CCDC28A-202ENST00000611852 RAB3GAP2Q9H2M9 1393 aa24.72■■□□□ 1.55
CCDC28A-202ENST00000611852 HSPA2P54652 639 aa24.71■■□□□ 1.55
CCDC28A-202ENST00000611852 ZNF142P52746 1687 aaPredicted RBP24.71■■□□□ 1.55
CCDC28A-202ENST00000611852 CEP170BQ9Y4F5 1589 aaPredicted RBP24.71■■□□□ 1.55
CCDC28A-202ENST00000611852 NLRP1Q9C000 1473 aa24.7■■□□□ 1.54
CCDC28A-202ENST00000611852 NOS1P29475 1434 aa24.7■■□□□ 1.54
CCDC28A-202ENST00000611852 A2ML1A8K2U0 1454 aa24.69■■□□□ 1.54
CCDC28A-202ENST00000611852 SYNMO15061 1565 aa24.67■■□□□ 1.54
CCDC28A-202ENST00000611852 ACIN1Q9UKV3 1341 aaKnown RBP24.67■■□□□ 1.54
CCDC28A-202ENST00000611852 TRIM26Q12899 539 aaPredicted RBP24.66■■□□□ 1.54
CCDC28A-202ENST00000611852 SLC4A1APQ9BWU0 796 aaKnown RBP24.65■■□□□ 1.54
CCDC28A-202ENST00000611852 UGGT1Q9NYU2 1555 aa24.62■■□□□ 1.53
CCDC28A-202ENST00000611852 HRCP23327 699 aa24.61■■□□□ 1.53
CCDC28A-202ENST00000611852 PKD2Q13563 968 aa24.61■■□□□ 1.53
CCDC28A-202ENST00000611852 IDI1Q13907 227 aa24.6■■□□□ 1.53
CCDC28A-202ENST00000611852 SLC52A1Q9NWF4 448 aa24.6■■□□□ 1.53
CCDC28A-202ENST00000611852 MPHOSPH9Q99550 1183 aa24.59■■□□□ 1.53
CCDC28A-202ENST00000611852 PTPRTO14522 1441 aa24.58■■□□□ 1.53
CCDC28A-202ENST00000611852 PIK3C2BO00750 1634 aa24.58■■□□□ 1.53
CCDC28A-202ENST00000611852 SPHKAPQ2M3C7 1700 aa24.57■■□□□ 1.52
CCDC28A-202ENST00000611852 UBR1Q8IWV7 1749 aa24.56■■□□□ 1.52
CCDC28A-202ENST00000611852 THEMISQ8N1K5 641 aaPredicted RBP24.56■■□□□ 1.52
CCDC28A-202ENST00000611852 PLA2R1Q13018 1463 aa24.56■■□□□ 1.52
CCDC28A-202ENST00000611852 STRCQ7RTU9 1775 aa24.54■■□□□ 1.52
CCDC28A-202ENST00000611852 FOXD1Q16676 465 aa24.52■■□□□ 1.52
CCDC28A-202ENST00000611852 KDM5AP29375 1690 aaKnown RBP24.52■■□□□ 1.52
CCDC28A-202ENST00000611852 ADGRB3O60242 1522 aa24.51■■□□□ 1.51
CCDC28A-202ENST00000611852 TRPM2O94759 1503 aa24.51■■□□□ 1.51
CCDC28A-202ENST00000611852 STAG3Q9UJ98 1225 aa24.51■■□□□ 1.51
CCDC28A-202ENST00000611852 NCKAP5LQ9HCH0 1330 aa24.47■■□□□ 1.51
CCDC28A-202ENST00000611852 TMEM131LA2VDJ0 1609 aa24.46■■□□□ 1.51
CCDC28A-202ENST00000611852 CLTCL1P53675 1640 aa24.46■■□□□ 1.51
CCDC28A-202ENST00000611852 ARHGAP23Q9P227 1491 aa24.46■■□□□ 1.51
CCDC28A-202ENST00000611852 SLIT1O75093 1534 aa24.45■■□□□ 1.5
CCDC28A-202ENST00000611852 ANKLE2Q86XL3 938 aa24.45■■□□□ 1.5
CCDC28A-202ENST00000611852 TMEM2Q9UHN6 1383 aa24.44■■□□□ 1.5
CCDC28A-202ENST00000611852 POLR1AO95602 1720 aaPredicted RBP24.43■■□□□ 1.5
CCDC28A-202ENST00000611852 MYO5BQ9ULV0 1848 aa24.43■■□□□ 1.5
CCDC28A-202ENST00000611852 CHGAP10645 457 aaKnown RBP24.43■■□□□ 1.5
CCDC28A-202ENST00000611852 DMRT2Q9Y5R5 561 aa24.43■■□□□ 1.5
CCDC28A-202ENST00000611852 NEURL4Q96JN8 1562 aa24.41■■□□□ 1.5
CCDC28A-202ENST00000611852 LTKP29376 864 aa24.4■■□□□ 1.5
CCDC28A-202ENST00000611852 SCAF11Q99590 1463 aaKnown RBP24.38■■□□□ 1.49
CCDC28A-202ENST00000611852 TXNDC2Q86VQ3 553 aa24.38■■□□□ 1.49
CCDC28A-202ENST00000611852 MED14O60244 1454 aa24.38■■□□□ 1.49
CCDC28A-202ENST00000611852 CCDC144AA2RUR9 1427 aa24.37■■□□□ 1.49
CCDC28A-202ENST00000611852 EID1Q9Y6B2 187 aa24.37■■□□□ 1.49
CCDC28A-202ENST00000611852 KIF1BO60333 1816 aa24.37■■□□□ 1.49
CCDC28A-202ENST00000611852 ZFYVE9O95405 1425 aa24.36■■□□□ 1.49
CCDC28A-202ENST00000611852 ANKRD30BQ9BXX2 1392 aa24.34■■□□□ 1.49
CCDC28A-202ENST00000611852 NPHP4O75161 1426 aaPredicted RBP24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms