RNA–Protein interactions for RNA: ENST00000607841.5

CTSA-219, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 571 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-219ENST00000607841 PTPRMP28827 1452 aa21.52■■□□□ 1.04
CTSA-219ENST00000607841 EIF2AK4Q9P2K8 1649 aaKnown RBP21.52■■□□□ 1.04
CTSA-219ENST00000607841 WASHC2CQ9Y4E1 1318 aa21.51■■□□□ 1.03
CTSA-219ENST00000607841 FER1L4A9Z1Z3 1794 aa21.48■■□□□ 1.03
CTSA-219ENST00000607841 RIMS1Q86UR5 1692 aaKnown RBP21.47■■□□□ 1.03
CTSA-219ENST00000607841 FAM135AQ9P2D6 1515 aa21.46■■□□□ 1.03
CTSA-219ENST00000607841 PLPPR3Q6T4P5 718 aa21.46■■□□□ 1.03
CTSA-219ENST00000607841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.46■■□□□ 1.031e-6■□□□□ 9.5
CTSA-219ENST00000607841 KANK1Q14678 1352 aa21.46■■□□□ 1.03
CTSA-219ENST00000607841 ZMYM3Q14202 1370 aa21.45■■□□□ 1.02
CTSA-219ENST00000607841 RNF17Q9BXT8 1623 aaKnown RBP21.44■■□□□ 1.02
CTSA-219ENST00000607841 CEBPAP49715 358 aaPredicted RBP21.43■■□□□ 1.02
CTSA-219ENST00000607841 KDM5DQ9BY66 1539 aa21.43■■□□□ 1.02
CTSA-219ENST00000607841 HFM1A2PYH4 1435 aa21.42■■□□□ 1.02
CTSA-219ENST00000607841 NAIPQ13075 1403 aa21.41■■□□□ 1.02
CTSA-219ENST00000607841 PRDM15P57071 1507 aaPredicted RBP21.39■■□□□ 1.01
CTSA-219ENST00000607841 MROH2AA6NES4 1674 aa21.37■■□□□ 1.01
CTSA-219ENST00000607841 CLTCQ00610 1675 aaKnown RBP21.37■■□□□ 1.01
CTSA-219ENST00000607841 MROH1Q8NDA8 1641 aa21.37■■□□□ 1.01
CTSA-219ENST00000607841 ABCC3O15438 1527 aa21.37■■□□□ 1.01
CTSA-219ENST00000607841 DEPDC5O75140 1603 aa21.37■■□□□ 1.01
CTSA-219ENST00000607841 ZC3H13Q5T200 1668 aaKnown RBP21.34■■□□□ 1.01
CTSA-219ENST00000607841 NPATQ14207 1427 aa21.34■■□□□ 1.01
CTSA-219ENST00000607841 NUP155O75694 1391 aa21.33■■□□□ 1
CTSA-219ENST00000607841 ACIN1Q9UKV3 1341 aaKnown RBP21.32■■□□□ 1
CTSA-219ENST00000607841 C3P01024 1663 aa21.32■■□□□ 1
CTSA-219ENST00000607841 PZPP20742 1482 aa21.32■■□□□ 1
CTSA-219ENST00000607841 LMTK2Q8IWU2 1503 aa21.31■■□□□ 1
CTSA-219ENST00000607841 VWDEQ8N2E2 1590 aa21.31■■□□□ 1
CTSA-219ENST00000607841 GCC2Q8IWJ2 1684 aa21.31■■□□□ 1
CTSA-219ENST00000607841 ARHGAP31Q2M1Z3 1444 aa21.3■■□□□ 1
CTSA-219ENST00000607841 UNC13BO14795 1591 aa21.3■■□□□ 1
CTSA-219ENST00000607841 FBXO31Q5XUX0 539 aaPredicted RBP21.29■■□□□ 1
CTSA-219ENST00000607841 SETD5Q9C0A6 1442 aa21.29■■□□□ 1
CTSA-219ENST00000607841 TRIM52Q96A61 297 aa21.28■■□□□ 1
CTSA-219ENST00000607841 UHRF1BP1Q6BDS2 1440 aa21.26■□□□□ 0.99
CTSA-219ENST00000607841 TNRQ92752 1358 aa21.25■□□□□ 0.99
CTSA-219ENST00000607841 CEP152O94986 1710 aa21.25■□□□□ 0.99
CTSA-219ENST00000607841 TRIM26Q12899 539 aaPredicted RBP21.25■□□□□ 0.99
CTSA-219ENST00000607841 CAMSAP1Q5T5Y3 1602 aa21.25■□□□□ 0.99
CTSA-219ENST00000607841 EFCAB6Q5THR3 1501 aa21.22■□□□□ 0.99
CTSA-219ENST00000607841 IQGAP3Q86VI3 1631 aa21.22■□□□□ 0.99
CTSA-219ENST00000607841 RPRD2Q5VT52 1461 aaKnown RBP21.21■□□□□ 0.99
CTSA-219ENST00000607841 ERVK-7P63135 1459 aa21.2■□□□□ 0.98
CTSA-219ENST00000607841 SETD1BQ9UPS6 1966 aaKnown RBP21.2■□□□□ 0.98
CTSA-219ENST00000607841 HRCP23327 699 aa21.2■□□□□ 0.98
CTSA-219ENST00000607841 RAB3GAP2Q9H2M9 1393 aa21.2■□□□□ 0.98
CTSA-219ENST00000607841 LMTK3Q96Q04 1460 aa21.2■□□□□ 0.98
CTSA-219ENST00000607841 SPATA31D1Q6ZQQ2 1576 aa21.19■□□□□ 0.98
CTSA-219ENST00000607841 TET3O43151 1660 aa21.18■□□□□ 0.98
CTSA-219ENST00000607841 SLC4A1APQ9BWU0 796 aaKnown RBP21.18■□□□□ 0.98
CTSA-219ENST00000607841 PREX1Q8TCU6 1659 aa21.18■□□□□ 0.98
CTSA-219ENST00000607841 NLRP1Q9C000 1473 aa21.17■□□□□ 0.98
CTSA-219ENST00000607841 SLC52A1Q9NWF4 448 aa21.15■□□□□ 0.98
CTSA-219ENST00000607841 NOS1P29475 1434 aa21.14■□□□□ 0.98
CTSA-219ENST00000607841 HSPA2P54652 639 aa21.13■□□□□ 0.97
CTSA-219ENST00000607841 PKD2Q13563 968 aa21.13■□□□□ 0.97
CTSA-219ENST00000607841 MPHOSPH9Q99550 1183 aa21.13■□□□□ 0.97
CTSA-219ENST00000607841 A2ML1A8K2U0 1454 aa21.13■□□□□ 0.97
CTSA-219ENST00000607841 MYO3AQ8NEV4 1616 aa21.12■□□□□ 0.97
CTSA-219ENST00000607841 THEMISQ8N1K5 641 aaPredicted RBP21.11■□□□□ 0.97
CTSA-219ENST00000607841 CEP170BQ9Y4F5 1589 aaPredicted RBP21.1■□□□□ 0.97
CTSA-219ENST00000607841 IDI1Q13907 227 aa21.09■□□□□ 0.97
CTSA-219ENST00000607841 STAG3Q9UJ98 1225 aa21.09■□□□□ 0.97
CTSA-219ENST00000607841 E9PCH4 1651 aa21.08■□□□□ 0.96
CTSA-219ENST00000607841 UGGT1Q9NYU2 1555 aa21.06■□□□□ 0.96
CTSA-219ENST00000607841 ZNF142P52746 1687 aaPredicted RBP21.05■□□□□ 0.96
CTSA-219ENST00000607841 PTPRTO14522 1441 aa21.05■□□□□ 0.96
CTSA-219ENST00000607841 CFAP65Q6ZU64 1925 aaKnown RBP21.04■□□□□ 0.96
CTSA-219ENST00000607841 SYNMO15061 1565 aa21.04■□□□□ 0.96
CTSA-219ENST00000607841 PLA2R1Q13018 1463 aa21.01■□□□□ 0.95
CTSA-219ENST00000607841 FOXD1Q16676 465 aa21.01■□□□□ 0.95
CTSA-219ENST00000607841 DMRT2Q9Y5R5 561 aa21.01■□□□□ 0.95
CTSA-219ENST00000607841 CHGAP10645 457 aaKnown RBP20.99■□□□□ 0.95
CTSA-219ENST00000607841 ANKLE2Q86XL3 938 aa20.99■□□□□ 0.95
CTSA-219ENST00000607841 TRPM2O94759 1503 aa20.98■□□□□ 0.95
CTSA-219ENST00000607841 PIK3C2BO00750 1634 aa20.96■□□□□ 0.95
CTSA-219ENST00000607841 HDGFP51858 240 aaKnown RBP20.96■□□□□ 0.95
CTSA-219ENST00000607841 FBXO41Q8TF61 875 aa20.96■□□□□ 0.95
CTSA-219ENST00000607841 EID1Q9Y6B2 187 aa20.96■□□□□ 0.95
CTSA-219ENST00000607841 NCKAP5LQ9HCH0 1330 aa20.96■□□□□ 0.95
CTSA-219ENST00000607841 SPHKAPQ2M3C7 1700 aa20.95■□□□□ 0.94
CTSA-219ENST00000607841 ADGRB3O60242 1522 aa20.95■□□□□ 0.94
CTSA-219ENST00000607841 TMEM2Q9UHN6 1383 aa20.95■□□□□ 0.94
CTSA-219ENST00000607841 KDM5AP29375 1690 aaKnown RBP20.94■□□□□ 0.94
CTSA-219ENST00000607841 PCGF6Q9BYE7 350 aa20.94■□□□□ 0.94
CTSA-219ENST00000607841 UBR1Q8IWV7 1749 aa20.94■□□□□ 0.94
CTSA-219ENST00000607841 TXNDC2Q86VQ3 553 aa20.93■□□□□ 0.94
CTSA-219ENST00000607841 CCDC144AA2RUR9 1427 aa20.93■□□□□ 0.94
CTSA-219ENST00000607841 SLIT1O75093 1534 aa20.91■□□□□ 0.94
CTSA-219ENST00000607841 ARHGAP23Q9P227 1491 aa20.91■□□□□ 0.94
CTSA-219ENST00000607841 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.9■□□□□ 0.94
CTSA-219ENST00000607841 ZNF326Q5BKZ1 582 aaKnown RBP20.89■□□□□ 0.93
CTSA-219ENST00000607841 TMEM131LA2VDJ0 1609 aa20.89■□□□□ 0.93
CTSA-219ENST00000607841 LTKP29376 864 aa20.88■□□□□ 0.93
CTSA-219ENST00000607841 SCAF11Q99590 1463 aaKnown RBP20.88■□□□□ 0.93
CTSA-219ENST00000607841 STRCQ7RTU9 1775 aa20.87■□□□□ 0.93
CTSA-219ENST00000607841 ANKRD30BQ9BXX2 1392 aa20.87■□□□□ 0.93
CTSA-219ENST00000607841 CLTCL1P53675 1640 aa20.87■□□□□ 0.93
CTSA-219ENST00000607841 PPP1R15AO75807 674 aaPredicted RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms