RNA–Protein interactions for RNA: ENST00000606499.1

MSH6-211, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 833 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-211ENST00000606499 PCGF6Q9BYE7 350 aa11.57□□□□□ -0.56
MSH6-211ENST00000606499 PRDM15P57071 1507 aaPredicted RBP11.55□□□□□ -0.56
MSH6-211ENST00000606499 CEP152O94986 1710 aa11.55□□□□□ -0.56
MSH6-211ENST00000606499 SETD5Q9C0A6 1442 aa11.55□□□□□ -0.56
MSH6-211ENST00000606499 FER1L4A9Z1Z3 1794 aa11.54□□□□□ -0.56
MSH6-211ENST00000606499 RAB3GAP2Q9H2M9 1393 aa11.54□□□□□ -0.56
MSH6-211ENST00000606499 IQGAP3Q86VI3 1631 aa11.53□□□□□ -0.56
MSH6-211ENST00000606499 CLTCQ00610 1675 aaKnown RBP11.52□□□□□ -0.56
MSH6-211ENST00000606499 ZC3H13Q5T200 1668 aaKnown RBP11.52□□□□□ -0.56
MSH6-211ENST00000606499 KIF3BO15066 747 aa11.52□□□□□ -0.57
MSH6-211ENST00000606499 ARID4BQ4LE39 1312 aaPredicted RBP11.52□□□□□ -0.57
MSH6-211ENST00000606499 MADDQ8WXG6 1647 aa11.52□□□□□ -0.57
MSH6-211ENST00000606499 VWDEQ8N2E2 1590 aa11.51□□□□□ -0.57
MSH6-211ENST00000606499 ADAMTSL3P82987 1691 aa11.51□□□□□ -0.57
MSH6-211ENST00000606499 KDM5DQ9BY66 1539 aa11.5□□□□□ -0.57
MSH6-211ENST00000606499 CAMSAP1Q5T5Y3 1602 aa11.5□□□□□ -0.57
MSH6-211ENST00000606499 RIMS1Q86UR5 1692 aaKnown RBP11.49□□□□□ -0.57
MSH6-211ENST00000606499 MLECQ14165 292 aa11.49□□□□□ -0.57
MSH6-211ENST00000606499 ABCC3O15438 1527 aa11.49□□□□□ -0.57
MSH6-211ENST00000606499 FAM135AQ9P2D6 1515 aa11.49□□□□□ -0.57
MSH6-211ENST00000606499 MROH2AA6NES4 1674 aa11.49□□□□□ -0.57
MSH6-211ENST00000606499 TET3O43151 1660 aa11.49□□□□□ -0.57
MSH6-211ENST00000606499 GGT6Q6P531 493 aa11.48□□□□□ -0.57
MSH6-211ENST00000606499 E9PCH4 1651 aa11.47□□□□□ -0.57
MSH6-211ENST00000606499 EFCAB6Q5THR3 1501 aa11.47□□□□□ -0.57
MSH6-211ENST00000606499 PZPP20742 1482 aa11.47□□□□□ -0.57
MSH6-211ENST00000606499 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.47□□□□□ -0.57
MSH6-211ENST00000606499 LMTK2Q8IWU2 1503 aa11.46□□□□□ -0.57
MSH6-211ENST00000606499 C3P01024 1663 aa11.46□□□□□ -0.58
MSH6-211ENST00000606499 NUP155O75694 1391 aa11.45□□□□□ -0.58
MSH6-211ENST00000606499 KANK1Q14678 1352 aa11.45□□□□□ -0.58
MSH6-211ENST00000606499 TRIM52Q96A61 297 aa11.44□□□□□ -0.58
MSH6-211ENST00000606499 PREX1Q8TCU6 1659 aa11.43□□□□□ -0.58
MSH6-211ENST00000606499 WASHC2CQ9Y4E1 1318 aa11.42□□□□□ -0.58
MSH6-211ENST00000606499 SPHKAPQ2M3C7 1700 aa11.42□□□□□ -0.58
MSH6-211ENST00000606499 HRCP23327 699 aa11.41□□□□□ -0.58
MSH6-211ENST00000606499 CNTLNQ9NXG0 1405 aa11.41□□□□□ -0.58
MSH6-211ENST00000606499 NPATQ14207 1427 aa11.4□□□□□ -0.58
MSH6-211ENST00000606499 CFAP65Q6ZU64 1925 aaKnown RBP11.39□□□□□ -0.59
MSH6-211ENST00000606499 ESF1Q9H501 851 aaKnown RBP11.39□□□□□ -0.59
MSH6-211ENST00000606499 PTPRMP28827 1452 aa11.38□□□□□ -0.59
MSH6-211ENST00000606499 SYNMO15061 1565 aa11.38□□□□□ -0.59
MSH6-211ENST00000606499 ARHGAP31Q2M1Z3 1444 aa11.38□□□□□ -0.59
MSH6-211ENST00000606499 PLPPR3Q6T4P5 718 aa11.38□□□□□ -0.59
MSH6-211ENST00000606499 SLC4A1APQ9BWU0 796 aaKnown RBP11.38□□□□□ -0.59
MSH6-211ENST00000606499 PPP6R1Q9UPN7 881 aa11.38□□□□□ -0.59
MSH6-211ENST00000606499 RPRD2Q5VT52 1461 aaKnown RBP11.38□□□□□ -0.59
MSH6-211ENST00000606499 ACIN1Q9UKV3 1341 aaKnown RBP11.37□□□□□ -0.59
MSH6-211ENST00000606499 KDM4FA0A1W2PPD8 638 aa11.37□□□□□ -0.59
MSH6-211ENST00000606499 MPHOSPH9Q99550 1183 aa11.37□□□□□ -0.59
MSH6-211ENST00000606499 ZMYM3Q14202 1370 aa11.37□□□□□ -0.59
MSH6-211ENST00000606499 DHX57Q6P158 1386 aaKnown RBP11.37□□□□□ -0.59
MSH6-211ENST00000606499 ERVK-7P63135 1459 aa11.37□□□□□ -0.59
MSH6-211ENST00000606499 SPATA31D1Q6ZQQ2 1576 aa11.37□□□□□ -0.59
MSH6-211ENST00000606499 MYO3AQ8NEV4 1616 aa11.36□□□□□ -0.59
MSH6-211ENST00000606499 PKD2Q13563 968 aa11.36□□□□□ -0.59
MSH6-211ENST00000606499 FOXD1Q16676 465 aa11.36□□□□□ -0.59
MSH6-211ENST00000606499 UGGT1Q9NYU2 1555 aa11.36□□□□□ -0.59
MSH6-211ENST00000606499 TRPM2O94759 1503 aa11.35□□□□□ -0.59
MSH6-211ENST00000606499 CLTCL1P53675 1640 aa11.35□□□□□ -0.59
MSH6-211ENST00000606499 PIK3C2BO00750 1634 aa11.35□□□□□ -0.59
MSH6-211ENST00000606499 CEBPAP49715 358 aaPredicted RBP11.34□□□□□ -0.59
MSH6-211ENST00000606499 PLA2R1Q13018 1463 aa11.33□□□□□ -0.6
MSH6-211ENST00000606499 FBXO31Q5XUX0 539 aaPredicted RBP11.33□□□□□ -0.6
MSH6-211ENST00000606499 NOS1P29475 1434 aa11.33□□□□□ -0.6
MSH6-211ENST00000606499 ZNF142P52746 1687 aaPredicted RBP11.32□□□□□ -0.6
MSH6-211ENST00000606499 PTPRTO14522 1441 aa11.32□□□□□ -0.6
MSH6-211ENST00000606499 MYO5BQ9ULV0 1848 aa11.31□□□□□ -0.6
MSH6-211ENST00000606499 KIF1BO60333 1816 aa11.3□□□□□ -0.6
MSH6-211ENST00000606499 TNRQ92752 1358 aa11.29□□□□□ -0.6
MSH6-211ENST00000606499 ANKRD30BQ9BXX2 1392 aa11.29□□□□□ -0.6
MSH6-211ENST00000606499 UBR1Q8IWV7 1749 aa11.29□□□□□ -0.6
MSH6-211ENST00000606499 CEP170BQ9Y4F5 1589 aaPredicted RBP11.28□□□□□ -0.6
MSH6-211ENST00000606499 ADGRB3O60242 1522 aa11.28□□□□□ -0.6
MSH6-211ENST00000606499 TMEM131LA2VDJ0 1609 aa11.27□□□□□ -0.6
MSH6-211ENST00000606499 CCDC144AA2RUR9 1427 aa11.27□□□□□ -0.6
MSH6-211ENST00000606499 KDM5AP29375 1690 aaKnown RBP11.27□□□□□ -0.6
MSH6-211ENST00000606499 NLRP1Q9C000 1473 aa11.27□□□□□ -0.6
MSH6-211ENST00000606499 CCER1Q8TC90 406 aaPredicted RBP11.26□□□□□ -0.61
MSH6-211ENST00000606499 IFT172Q9UG01 1749 aa11.25□□□□□ -0.61
MSH6-211ENST00000606499 A2ML1A8K2U0 1454 aa11.25□□□□□ -0.61
MSH6-211ENST00000606499 UHRF1BP1Q6BDS2 1440 aa11.24□□□□□ -0.61
MSH6-211ENST00000606499 IDI1Q13907 227 aa11.23□□□□□ -0.61
MSH6-211ENST00000606499 SETD1BQ9UPS6 1966 aaKnown RBP11.23□□□□□ -0.61
MSH6-211ENST00000606499 PPLO60437 1756 aa11.22□□□□□ -0.61
MSH6-211ENST00000606499 SPATA31E1Q6ZUB1 1445 aa11.22□□□□□ -0.61
MSH6-211ENST00000606499 NEURL4Q96JN8 1562 aa11.22□□□□□ -0.61
MSH6-211ENST00000606499 LMTK3Q96Q04 1460 aa11.22□□□□□ -0.61
MSH6-211ENST00000606499 SIN3AQ96ST3 1273 aa11.22□□□□□ -0.61
MSH6-211ENST00000606499 SLC52A1Q9NWF4 448 aa11.21□□□□□ -0.61
MSH6-211ENST00000606499 POLR1AO95602 1720 aaPredicted RBP11.21□□□□□ -0.62
MSH6-211ENST00000606499 NEXMIFQ5QGS0 1516 aa11.2□□□□□ -0.62
MSH6-211ENST00000606499 CLSPNQ9HAW4 1339 aa11.2□□□□□ -0.62
MSH6-211ENST00000606499 CHGAP10645 457 aaKnown RBP11.2□□□□□ -0.62
MSH6-211ENST00000606499 NEUROD1Q13562 356 aa11.2□□□□□ -0.62
MSH6-211ENST00000606499 SLIT1O75093 1534 aa11.18□□□□□ -0.62
MSH6-211ENST00000606499 STAG3Q9UJ98 1225 aa11.17□□□□□ -0.62
MSH6-211ENST00000606499 ARHGAP23Q9P227 1491 aa11.17□□□□□ -0.62
MSH6-211ENST00000606499 ZFYVE9O95405 1425 aa11.17□□□□□ -0.62
MSH6-211ENST00000606499 RGL3Q3MIN7 710 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms