RNA–Protein interactions for RNA: ENST00000605424.5

MMP28-201, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MMP28, Length 1,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-201ENST00000605424 ATP10AO60312 1499 aa27.66■■■□□ 2.02
MMP28-201ENST00000605424 SPAG9O60271 1321 aaKnown RBP27.65■■■□□ 2.02
MMP28-201ENST00000605424 FANCAO15360 1455 aa27.65■■■□□ 2.02
MMP28-201ENST00000605424 ZFYVE16Q7Z3T8 1539 aa27.63■■■□□ 2.01
MMP28-201ENST00000605424 ARID4BQ4LE39 1312 aaPredicted RBP27.63■■■□□ 2.01
MMP28-201ENST00000605424 C11orf95C9JLR9 678 aaPredicted RBP27.63■■■□□ 2.01
MMP28-201ENST00000605424 USP47Q96K76 1375 aa27.63■■■□□ 2.01
MMP28-201ENST00000605424 KDM5CP41229 1560 aa27.62■■■□□ 2.01
MMP28-201ENST00000605424 DIP2BQ9P265 1576 aa27.62■■■□□ 2.01
MMP28-201ENST00000605424 FAM69CQ0P6D2 419 aa27.61■■■□□ 2.01
MMP28-201ENST00000605424 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.6■■■□□ 2.01
MMP28-201ENST00000605424 PLA2R1Q13018 1463 aa27.6■■■□□ 2.01
MMP28-201ENST00000605424 KIF7Q2M1P5 1343 aa27.58■■■□□ 2.01
MMP28-201ENST00000605424 ZNF326Q5BKZ1 582 aaKnown RBP27.57■■■□□ 2
MMP28-201ENST00000605424 INO80Q9ULG1 1556 aaPredicted RBP27.56■■■□□ 2
MMP28-201ENST00000605424 KIF13AQ9H1H9 1805 aa27.56■■■□□ 2
MMP28-201ENST00000605424 AFAP1Q8N556 730 aa27.56■■■□□ 2
MMP28-201ENST00000605424 DCAF11Q8TEB1 546 aa27.56■■■□□ 2
MMP28-201ENST00000605424 ADGRL1O94910 1474 aa27.54■■■□□ 2
MMP28-201ENST00000605424 ATP7AQ04656 1500 aa27.54■■■□□ 2
MMP28-201ENST00000605424 GLI2P10070 1586 aa27.54■■■□□ 2
MMP28-201ENST00000605424 DEPDC5O75140 1603 aa27.52■■■□□ 2
MMP28-201ENST00000605424 CARD11Q9BXL7 1154 aa27.52■■■□□ 2
MMP28-201ENST00000605424 SCAPERQ9BY12 1400 aa27.51■■□□□ 1.99
MMP28-201ENST00000605424 CD109Q6YHK3 1445 aa27.5■■□□□ 1.99
MMP28-201ENST00000605424 KDM2AQ9Y2K7 1162 aa27.49■■□□□ 1.99
MMP28-201ENST00000605424 PRAG1Q86YV5 1406 aa27.49■■□□□ 1.99
MMP28-201ENST00000605424 MAP3K4Q9Y6R4 1608 aa27.49■■□□□ 1.99
MMP28-201ENST00000605424 BCORL1Q5H9F3 1711 aa27.48■■□□□ 1.99
MMP28-201ENST00000605424 EIF2AK4Q9P2K8 1649 aaKnown RBP27.48■■□□□ 1.99
MMP28-201ENST00000605424 TRHP20396 242 aaPredicted RBP27.47■■□□□ 1.99
MMP28-201ENST00000605424 ROCK2O75116 1388 aaKnown RBP27.47■■□□□ 1.99
MMP28-201ENST00000605424 CFAP74Q9C0B2 1584 aa27.46■■□□□ 1.99
MMP28-201ENST00000605424 TRPM1Q7Z4N2 1603 aa27.46■■□□□ 1.99
MMP28-201ENST00000605424 PRKRIP1Q9H875 184 aaPredicted RBP27.45■■□□□ 1.99
MMP28-201ENST00000605424 A2MP01023 1474 aa27.45■■□□□ 1.99
MMP28-201ENST00000605424 DHX29Q7Z478 1369 aaKnown RBP27.43■■□□□ 1.98
MMP28-201ENST00000605424 TSPOAP1O95153 1857 aa27.43■■□□□ 1.98
MMP28-201ENST00000605424 LAMC1P11047 1609 aa27.43■■□□□ 1.98
MMP28-201ENST00000605424 KANK1Q14678 1352 aa27.43■■□□□ 1.98
MMP28-201ENST00000605424 VWDEQ8N2E2 1590 aa27.43■■□□□ 1.98
MMP28-201ENST00000605424 GPRASP1Q5JY77 1395 aa27.42■■□□□ 1.98
MMP28-201ENST00000605424 E9PCH4 1651 aa27.42■■□□□ 1.98
MMP28-201ENST00000605424 TET3O43151 1660 aa27.42■■□□□ 1.98
MMP28-201ENST00000605424 ZNF518AQ6AHZ1 1483 aa27.41■■□□□ 1.98
MMP28-201ENST00000605424 PPRC1Q5VV67 1664 aaKnown RBP27.41■■□□□ 1.98
MMP28-201ENST00000605424 TRPM2O94759 1503 aa27.4■■□□□ 1.98
MMP28-201ENST00000605424 PTPRTO14522 1441 aa27.4■■□□□ 1.98
MMP28-201ENST00000605424 RGL3Q3MIN7 710 aa27.38■■□□□ 1.97
MMP28-201ENST00000605424 STAC3Q96MF2 364 aa27.38■■□□□ 1.97
MMP28-201ENST00000605424 PRDM15P57071 1507 aaPredicted RBP27.37■■□□□ 1.97
MMP28-201ENST00000605424 SPHKAPQ2M3C7 1700 aa27.35■■□□□ 1.97
MMP28-201ENST00000605424 ST20-MTHFSA0A0A6YYL1 179 aa27.35■■□□□ 1.97
MMP28-201ENST00000605424 KIDINS220Q9ULH0 1771 aa27.35■■□□□ 1.97
MMP28-201ENST00000605424 MYT1LQ9UL68 1186 aa27.33■■□□□ 1.97
MMP28-201ENST00000605424 KIF3BO15066 747 aa27.31■■□□□ 1.96
MMP28-201ENST00000605424 NEURL4Q96JN8 1562 aa27.31■■□□□ 1.96
MMP28-201ENST00000605424 CEP152O94986 1710 aa27.31■■□□□ 1.96
MMP28-201ENST00000605424 MROH1Q8NDA8 1641 aa27.3■■□□□ 1.96
MMP28-201ENST00000605424 POGZQ7Z3K3 1410 aa27.3■■□□□ 1.96
MMP28-201ENST00000605424 MLH3Q9UHC1 1453 aa27.29■■□□□ 1.96
MMP28-201ENST00000605424 SUPT16HQ9Y5B9 1047 aaKnown RBP27.28■■□□□ 1.96
MMP28-201ENST00000605424 NEO1Q92859 1461 aa27.27■■□□□ 1.96
MMP28-201ENST00000605424 LMTK2Q8IWU2 1503 aa27.26■■□□□ 1.95
MMP28-201ENST00000605424 NBPF1Q3BBV0 1214 aa27.24■■□□□ 1.95
MMP28-201ENST00000605424 CLTCL1P53675 1640 aa27.24■■□□□ 1.95
MMP28-201ENST00000605424 RNF17Q9BXT8 1623 aaKnown RBP27.24■■□□□ 1.95
MMP28-201ENST00000605424 MRS2Q9HD23 443 aa27.24■■□□□ 1.95
MMP28-201ENST00000605424 POLR3GLQ9BT43 218 aa27.23■■□□□ 1.95
MMP28-201ENST00000605424 HNRNPUQ00839 825 aaKnown RBP eCLIP27.22■■□□□ 1.95
MMP28-201ENST00000605424 KTN1Q86UP2 1357 aaKnown RBP27.22■■□□□ 1.95
MMP28-201ENST00000605424 HECW2Q9P2P5 1572 aa27.22■■□□□ 1.95
MMP28-201ENST00000605424 EFCAB6Q5THR3 1501 aa27.21■■□□□ 1.95
MMP28-201ENST00000605424 PELP1Q8IZL8 1130 aaKnown RBP27.21■■□□□ 1.95
MMP28-201ENST00000605424 COL17A1Q9UMD9 1497 aaPredicted RBP27.21■■□□□ 1.95
MMP28-201ENST00000605424 CCDC184Q52MB2 194 aa27.2■■□□□ 1.95
MMP28-201ENST00000605424 MADDQ8WXG6 1647 aa27.2■■□□□ 1.94
MMP28-201ENST00000605424 RAPGEF3O95398 923 aa27.18■■□□□ 1.94
MMP28-201ENST00000605424 TESK2Q96S53 571 aa27.13■■□□□ 1.93
MMP28-201ENST00000605424 FRMPD1Q5SYB0 1578 aa27.13■■□□□ 1.93
MMP28-201ENST00000605424 KIAA1210Q9ULL0 1709 aa27.12■■□□□ 1.93
MMP28-201ENST00000605424 RALBP1Q15311 655 aa27.1■■□□□ 1.93
MMP28-201ENST00000605424 NEFLP07196 543 aa27.1■■□□□ 1.93
MMP28-201ENST00000605424 FAM9BQ8IZU0 186 aa27.1■■□□□ 1.93
MMP28-201ENST00000605424 KIF1BO60333 1816 aa27.09■■□□□ 1.93
MMP28-201ENST00000605424 TMF1P82094 1093 aa27.09■■□□□ 1.93
MMP28-201ENST00000605424 IQGAP1P46940 1657 aa27.09■■□□□ 1.93
MMP28-201ENST00000605424 MYOM2P54296 1465 aa27.09■■□□□ 1.93
MMP28-201ENST00000605424 ABCA6Q8N139 1617 aa27.08■■□□□ 1.93
MMP28-201ENST00000605424 WASHC2CQ9Y4E1 1318 aa27.07■■□□□ 1.92
MMP28-201ENST00000605424 RICTORQ6R327 1708 aa27.07■■□□□ 1.92
MMP28-201ENST00000605424 ZBED9Q6R2W3 1325 aa27.07■■□□□ 1.92
MMP28-201ENST00000605424 SCAF11Q99590 1463 aaKnown RBP27.05■■□□□ 1.92
MMP28-201ENST00000605424 DISP3Q9P2K9 1392 aa27.03■■□□□ 1.92
MMP28-201ENST00000605424 BRD4O60885 1362 aaPredicted RBP27.02■■□□□ 1.92
MMP28-201ENST00000605424 MYBBP1AQ9BQG0 1328 aaKnown RBP27.02■■□□□ 1.92
MMP28-201ENST00000605424 FKBP8Q14318 412 aa27.02■■□□□ 1.92
MMP28-201ENST00000605424 IFT172Q9UG01 1749 aa27■■□□□ 1.91
MMP28-201ENST00000605424 SLC24A1O60721 1099 aa27■■□□□ 1.91
MMP28-201ENST00000605424 DIP2CQ9Y2E4 1556 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms