RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 AEBP1Q8IUX7 1158 aa10.77□□□□□ -0.69
CSMD1-216ENST00000602557 DDX49Q9Y6V7 483 aaKnown RBP10.77□□□□□ -0.69
CSMD1-216ENST00000602557 GPATCH3Q96I76 525 aa10.77□□□□□ -0.69
CSMD1-216ENST00000602557 HDGFL2Q7Z4V5 671 aaPredicted RBP10.77□□□□□ -0.69
CSMD1-216ENST00000602557 HTATSF1O43719 755 aaKnown RBP10.77□□□□□ -0.69
CSMD1-216ENST00000602557 CARMIL1Q5VZK9 1371 aa10.77□□□□□ -0.69
CSMD1-216ENST00000602557 RAB3GAP2Q9H2M9 1393 aa10.77□□□□□ -0.69
CSMD1-216ENST00000602557 CHMP3Q9Y3E7 222 aa10.76□□□□□ -0.69
CSMD1-216ENST00000602557 RALBP1Q15311 655 aa10.76□□□□□ -0.69
CSMD1-216ENST00000602557 NFKBIBQ15653 356 aa10.76□□□□□ -0.69
CSMD1-216ENST00000602557 TPM4P67936 248 aa10.75□□□□□ -0.69
CSMD1-216ENST00000602557 CCDC146Q8IYE0 955 aa10.75□□□□□ -0.69
CSMD1-216ENST00000602557 CREBRFQ8IUR6 639 aa10.75□□□□□ -0.69
CSMD1-216ENST00000602557 RRP9O43818 475 aaKnown RBP10.75□□□□□ -0.69
CSMD1-216ENST00000602557 SMC4Q9NTJ3 1288 aa10.75□□□□□ -0.69
CSMD1-216ENST00000602557 MAP7D2Q96T17 732 aa10.74□□□□□ -0.69
CSMD1-216ENST00000602557 GPS2Q13227 327 aa10.74□□□□□ -0.69
CSMD1-216ENST00000602557 GORABQ5T7V8 394 aa10.73□□□□□ -0.69
CSMD1-216ENST00000602557 STK31Q9BXU1 1019 aa10.73□□□□□ -0.69
CSMD1-216ENST00000602557 NUP155O75694 1391 aa10.72□□□□□ -0.69
CSMD1-216ENST00000602557 SPAG9O60271 1321 aaKnown RBP10.72□□□□□ -0.69
CSMD1-216ENST00000602557 CCDC66A2RUB6 948 aa10.72□□□□□ -0.69
CSMD1-216ENST00000602557 CLUAP1Q96AJ1 413 aa10.72□□□□□ -0.69
CSMD1-216ENST00000602557 KANK4Q5T7N3 995 aaPredicted RBP10.72□□□□□ -0.69
CSMD1-216ENST00000602557 PMFBP1Q8TBY8 1022 aa10.72□□□□□ -0.69
CSMD1-216ENST00000602557 CSB-PGBD3P0DP91 1061 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 HSP90AB3PQ58FF7 597 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 TPM3P06753 285 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 HDGFP51858 240 aaKnown RBP10.71□□□□□ -0.69
CSMD1-216ENST00000602557 GGT6Q6P531 493 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 ZMYND15Q9H091 742 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 KIF16BQ96L93 1317 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 FAM161AQ3B820 660 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 ZHX1Q9UKY1 873 aaPredicted RBP10.71□□□□□ -0.69
CSMD1-216ENST00000602557 RASSF8Q8NHQ8 419 aa10.71□□□□□ -0.69
CSMD1-216ENST00000602557 SKOR2Q2VWA4 1001 aaPredicted RBP10.71□□□□□ -0.7
CSMD1-216ENST00000602557 NASPP49321 788 aaPredicted RBP10.71□□□□□ -0.7
CSMD1-216ENST00000602557 CENPJQ9HC77 1338 aaPredicted RBP10.71□□□□□ -0.7
CSMD1-216ENST00000602557 SLC4A10Q6U841 1118 aa10.7□□□□□ -0.7
CSMD1-216ENST00000602557 WIZO95785 1651 aa10.7□□□□□ -0.7
CSMD1-216ENST00000602557 ERICH4A6NGS2 130 aa10.7□□□□□ -0.7
CSMD1-216ENST00000602557 PLIN1O60240 522 aa10.7□□□□□ -0.7
CSMD1-216ENST00000602557 HMMRO75330 724 aa10.7□□□□□ -0.7
CSMD1-216ENST00000602557 EXOC6Q8TAG9 804 aa10.7□□□□□ -0.7
CSMD1-216ENST00000602557 PRDM2Q13029 1718 aa10.7□□□□□ -0.7
CSMD1-216ENST00000602557 MTERF4Q7Z6M4 381 aaKnown RBP10.7□□□□□ -0.7
CSMD1-216ENST00000602557 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.7□□□□□ -0.7
CSMD1-216ENST00000602557 PLCD4Q9BRC7 762 aa10.69□□□□□ -0.7
CSMD1-216ENST00000602557 CWC15Q9P013 229 aaKnown RBP10.69□□□□□ -0.7
CSMD1-216ENST00000602557 UQCRHLA0A096LP55 91 aa10.69□□□□□ -0.7
CSMD1-216ENST00000602557 UQCRHP07919 91 aa10.69□□□□□ -0.7
CSMD1-216ENST00000602557 IFT57Q9NWB7 429 aa10.69□□□□□ -0.7
CSMD1-216ENST00000602557 MPHOSPH9Q99550 1183 aa10.69□□□□□ -0.7
CSMD1-216ENST00000602557 RBM25P49756 843 aaKnown RBP10.68□□□□□ -0.7
CSMD1-216ENST00000602557 FBXW7Q969H0 707 aa10.68□□□□□ -0.7
CSMD1-216ENST00000602557 CCDC34Q96HJ3 373 aa10.68□□□□□ -0.7
CSMD1-216ENST00000602557 ST18O60284 1047 aa10.68□□□□□ -0.7
CSMD1-216ENST00000602557 DHX37Q8IY37 1157 aaKnown RBP10.67□□□□□ -0.7
CSMD1-216ENST00000602557 PRM3Q9NNZ6 103 aa10.67□□□□□ -0.7
CSMD1-216ENST00000602557 CECR2Q9BXF3 1484 aa10.67□□□□□ -0.7
CSMD1-216ENST00000602557 FRAT2O75474 233 aaPredicted RBP10.67□□□□□ -0.7
CSMD1-216ENST00000602557 RRP7AQ9Y3A4 280 aaKnown RBP10.67□□□□□ -0.7
CSMD1-216ENST00000602557 CCDC39Q9UFE4 941 aa10.67□□□□□ -0.7
CSMD1-216ENST00000602557 RDXP35241 583 aaKnown RBP10.66□□□□□ -0.7
CSMD1-216ENST00000602557 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.66□□□□□ -0.7
CSMD1-216ENST00000602557 FMN1Q68DA7 1419 aa10.66□□□□□ -0.7
CSMD1-216ENST00000602557 ANKRD30AQ9BXX3 1397 aa10.66□□□□□ -0.7
CSMD1-216ENST00000602557 HOMER1Q86YM7 354 aa10.66□□□□□ -0.7
CSMD1-216ENST00000602557 NUTM2DQ5VT03 806 aaPredicted RBP10.66□□□□□ -0.7
CSMD1-216ENST00000602557 E9PSI1 815 aa10.66□□□□□ -0.7
CSMD1-216ENST00000602557 CHMP4AQ9BY43 222 aa10.66□□□□□ -0.7
CSMD1-216ENST00000602557 CCDC88BA6NC98 1476 aa10.65□□□□□ -0.7
CSMD1-216ENST00000602557 CRBNQ96SW2 442 aa10.65□□□□□ -0.7
CSMD1-216ENST00000602557 SKIDA1Q1XH10 827 aa10.65□□□□□ -0.7
CSMD1-216ENST00000602557 CCDC9Q9Y3X0 531 aaKnown RBP10.65□□□□□ -0.7
CSMD1-216ENST00000602557 H0YHG0 523 aa10.65□□□□□ -0.7
CSMD1-216ENST00000602557 TRHP20396 242 aaPredicted RBP10.65□□□□□ -0.7
CSMD1-216ENST00000602557 FBXO3Q9UK99 471 aa10.65□□□□□ -0.7
CSMD1-216ENST00000602557 GOLGA6L19H0YKK7 550 aa10.65□□□□□ -0.71
CSMD1-216ENST00000602557 TOMM22Q9NS69 142 aa10.65□□□□□ -0.71
CSMD1-216ENST00000602557 TERF2IPQ9NYB0 399 aa10.65□□□□□ -0.71
CSMD1-216ENST00000602557 VPS53Q5VIR6 699 aa10.64□□□□□ -0.71
CSMD1-216ENST00000602557 NLRP13Q86W25 1043 aa10.64□□□□□ -0.71
CSMD1-216ENST00000602557 MPNDQ8N594 471 aa10.64□□□□□ -0.71
CSMD1-216ENST00000602557 KIF15Q9NS87 1388 aa10.64□□□□□ -0.71
CSMD1-216ENST00000602557 RRP12Q5JTH9 1297 aaKnown RBP10.64□□□□□ -0.71
CSMD1-216ENST00000602557 PES1O00541 588 aaKnown RBP10.64□□□□□ -0.71
CSMD1-216ENST00000602557 MRE11P49959 708 aa10.64□□□□□ -0.71
CSMD1-216ENST00000602557 MCTP1Q6DN14 999 aa10.64□□□□□ -0.71
CSMD1-216ENST00000602557 LTV1Q96GA3 475 aaPredicted RBP10.63□□□□□ -0.71
CSMD1-216ENST00000602557 TRERF1Q96PN7 1200 aa10.63□□□□□ -0.71
CSMD1-216ENST00000602557 RNF214Q8ND24 703 aa10.63□□□□□ -0.71
CSMD1-216ENST00000602557 MNS1Q8NEH6 495 aa10.63□□□□□ -0.71
CSMD1-216ENST00000602557 CARMIL2Q6F5E8 1435 aa10.63□□□□□ -0.71
CSMD1-216ENST00000602557 H3BQV1 296 aa10.63□□□□□ -0.71
CSMD1-216ENST00000602557 IFFO2Q5TF58 517 aa10.63□□□□□ -0.71
CSMD1-216ENST00000602557 PHLDB1Q86UU1 1377 aa10.62□□□□□ -0.71
CSMD1-216ENST00000602557 ZNF526Q8TF50 670 aaPredicted RBP10.62□□□□□ -0.71
CSMD1-216ENST00000602557 ARGLU1Q9NWB6 273 aaPredicted RBP10.62□□□□□ -0.71
CSMD1-216ENST00000602557 BECN2A8MW95 431 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms