RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 C3P01024 1663 aa21.82■■□□□ 1.08
USE1-210ENST00000601662 ANKRD30AQ9BXX3 1397 aa21.82■■□□□ 1.08
USE1-210ENST00000601662 CLTCQ00610 1675 aaKnown RBP21.82■■□□□ 1.08
USE1-210ENST00000601662 LMTK3Q96Q04 1460 aa21.8■■□□□ 1.08
USE1-210ENST00000601662 DUOX2Q9NRD8 1548 aa21.8■■□□□ 1.08
USE1-210ENST00000601662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.78■■□□□ 1.08
USE1-210ENST00000601662 NCOA1Q15788 1441 aa21.77■■□□□ 1.08
USE1-210ENST00000601662 SETD1BQ9UPS6 1966 aaKnown RBP21.76■■□□□ 1.07
USE1-210ENST00000601662 MROH2AA6NES4 1674 aa21.75■■□□□ 1.07
USE1-210ENST00000601662 PTPRKQ15262 1439 aa21.74■■□□□ 1.07
USE1-210ENST00000601662 UHRF1BP1Q6BDS2 1440 aa21.74■■□□□ 1.07
USE1-210ENST00000601662 FBXO31Q5XUX0 539 aaPredicted RBP21.73■■□□□ 1.07
USE1-210ENST00000601662 ERBINQ96RT1 1412 aa21.72■■□□□ 1.07
USE1-210ENST00000601662 KDM5DQ9BY66 1539 aa21.71■■□□□ 1.07
USE1-210ENST00000601662 EIF2AK4Q9P2K8 1649 aaKnown RBP21.71■■□□□ 1.07
USE1-210ENST00000601662 PREX1Q8TCU6 1659 aa21.71■■□□□ 1.07
USE1-210ENST00000601662 ADGRL2O95490 1459 aa21.71■■□□□ 1.07
USE1-210ENST00000601662 PCGF6Q9BYE7 350 aa21.7■■□□□ 1.06
USE1-210ENST00000601662 NPATQ14207 1427 aa21.7■■□□□ 1.06
USE1-210ENST00000601662 RNF17Q9BXT8 1623 aaKnown RBP21.69■■□□□ 1.06
USE1-210ENST00000601662 ABCC3O15438 1527 aa21.65■■□□□ 1.06
USE1-210ENST00000601662 ANKRD50Q9ULJ7 1429 aa21.65■■□□□ 1.06
USE1-210ENST00000601662 KANK1Q14678 1352 aa21.65■■□□□ 1.06
USE1-210ENST00000601662 MROH1Q8NDA8 1641 aa21.65■■□□□ 1.06
USE1-210ENST00000601662 FAM135AQ9P2D6 1515 aa21.65■■□□□ 1.06
USE1-210ENST00000601662 PZPP20742 1482 aa21.64■■□□□ 1.05
USE1-210ENST00000601662 ROCK1Q13464 1354 aa21.62■■□□□ 1.05
USE1-210ENST00000601662 TNRQ92752 1358 aa21.62■■□□□ 1.05
USE1-210ENST00000601662 CEP152O94986 1710 aa21.61■■□□□ 1.05
USE1-210ENST00000601662 CFAP65Q6ZU64 1925 aaKnown RBP21.6■■□□□ 1.05
USE1-210ENST00000601662 ZC3H13Q5T200 1668 aaKnown RBP21.59■■□□□ 1.05
USE1-210ENST00000601662 PRDM15P57071 1507 aaPredicted RBP21.59■■□□□ 1.05
USE1-210ENST00000601662 DEPDC5O75140 1603 aa21.56■■□□□ 1.04
USE1-210ENST00000601662 CAMSAP1Q5T5Y3 1602 aa21.56■■□□□ 1.04
USE1-210ENST00000601662 MYO3AQ8NEV4 1616 aa21.56■■□□□ 1.04
USE1-210ENST00000601662 CEP170BQ9Y4F5 1589 aaPredicted RBP21.53■■□□□ 1.04
USE1-210ENST00000601662 A2ML1A8K2U0 1454 aa21.53■■□□□ 1.04
USE1-210ENST00000601662 NCKAP5LQ9HCH0 1330 aa21.53■■□□□ 1.04
USE1-210ENST00000601662 ERVK-7P63135 1459 aa21.52■■□□□ 1.04
USE1-210ENST00000601662 DMRT2Q9Y5R5 561 aa21.52■■□□□ 1.04
USE1-210ENST00000601662 HFM1A2PYH4 1435 aa21.5■■□□□ 1.03
USE1-210ENST00000601662 ARHGAP31Q2M1Z3 1444 aa21.5■■□□□ 1.03
USE1-210ENST00000601662 ACIN1Q9UKV3 1341 aaKnown RBP21.5■■□□□ 1.03
USE1-210ENST00000601662 VWDEQ8N2E2 1590 aa21.49■■□□□ 1.03
USE1-210ENST00000601662 STRCQ7RTU9 1775 aa21.49■■□□□ 1.03
USE1-210ENST00000601662 SETD5Q9C0A6 1442 aa21.49■■□□□ 1.03
USE1-210ENST00000601662 HRCP23327 699 aa21.49■■□□□ 1.03
USE1-210ENST00000601662 NUP155O75694 1391 aa21.48■■□□□ 1.03
USE1-210ENST00000601662 SPATA31D1Q6ZQQ2 1576 aa21.48■■□□□ 1.03
USE1-210ENST00000601662 LMTK2Q8IWU2 1503 aa21.48■■□□□ 1.03
USE1-210ENST00000601662 ZNF142P52746 1687 aaPredicted RBP21.47■■□□□ 1.03
USE1-210ENST00000601662 NLRP1Q9C000 1473 aa21.47■■□□□ 1.03
USE1-210ENST00000601662 THEMISQ8N1K5 641 aaPredicted RBP21.47■■□□□ 1.03
USE1-210ENST00000601662 NAIPQ13075 1403 aa21.46■■□□□ 1.03
USE1-210ENST00000601662 PKD2Q13563 968 aa21.44■■□□□ 1.02
USE1-210ENST00000601662 STAG3Q9UJ98 1225 aa21.44■■□□□ 1.02
USE1-210ENST00000601662 UNC13BO14795 1591 aa21.44■■□□□ 1.02
USE1-210ENST00000601662 UGGT1Q9NYU2 1555 aa21.44■■□□□ 1.02
USE1-210ENST00000601662 EFCAB6Q5THR3 1501 aa21.43■■□□□ 1.02
USE1-210ENST00000601662 ANKLE2Q86XL3 938 aa21.42■■□□□ 1.02
USE1-210ENST00000601662 TRIM52Q96A61 297 aa21.42■■□□□ 1.02
USE1-210ENST00000601662 PLA2R1Q13018 1463 aa21.41■■□□□ 1.02
USE1-210ENST00000601662 IDI1Q13907 227 aa21.41■■□□□ 1.02
USE1-210ENST00000601662 PTPRTO14522 1441 aa21.4■■□□□ 1.02
USE1-210ENST00000601662 RAB3GAP2Q9H2M9 1393 aa21.38■■□□□ 1.01
USE1-210ENST00000601662 TET3O43151 1660 aa21.38■■□□□ 1.01
USE1-210ENST00000601662 NOS1P29475 1434 aa21.38■■□□□ 1.01
USE1-210ENST00000601662 GCC2Q8IWJ2 1684 aa21.37■■□□□ 1.01
USE1-210ENST00000601662 IQGAP3Q86VI3 1631 aa21.36■■□□□ 1.01
USE1-210ENST00000601662 RPRD2Q5VT52 1461 aaKnown RBP21.35■■□□□ 1.01
USE1-210ENST00000601662 CHGAP10645 457 aaKnown RBP21.35■■□□□ 1.01
USE1-210ENST00000601662 SLC52A1Q9NWF4 448 aa21.35■■□□□ 1.01
USE1-210ENST00000601662 SYNMO15061 1565 aa21.35■■□□□ 1.01
USE1-210ENST00000601662 TXNDC2Q86VQ3 553 aa21.33■■□□□ 1.01
USE1-210ENST00000601662 PIK3C2BO00750 1634 aa21.33■■□□□ 1
USE1-210ENST00000601662 E9PCH4 1651 aa21.32■■□□□ 1
USE1-210ENST00000601662 UBR1Q8IWV7 1749 aa21.32■■□□□ 1
USE1-210ENST00000601662 CERKQ8TCT0 537 aa21.31■■□□□ 1
USE1-210ENST00000601662 LTKP29376 864 aa21.3■■□□□ 1
USE1-210ENST00000601662 EID1Q9Y6B2 187 aa21.3■■□□□ 1
USE1-210ENST00000601662 ZNF335Q9H4Z2 1342 aaPredicted RBP21.29■■□□□ 1
USE1-210ENST00000601662 ILDR1Q86SU0 546 aaPredicted RBP21.29■■□□□ 1
USE1-210ENST00000601662 SLC4A1APQ9BWU0 796 aaKnown RBP21.29■■□□□ 1
USE1-210ENST00000601662 POLR1AO95602 1720 aaPredicted RBP21.28■■□□□ 1
USE1-210ENST00000601662 NPHP4O75161 1426 aaPredicted RBP21.28■■□□□ 1
USE1-210ENST00000601662 SENP3Q9H4L4 574 aaPredicted RBP21.27■■□□□ 1
USE1-210ENST00000601662 NEURL4Q96JN8 1562 aa21.27■□□□□ 0.99
USE1-210ENST00000601662 TMEM2Q9UHN6 1383 aa21.26■□□□□ 0.99
USE1-210ENST00000601662 SCAF11Q99590 1463 aaKnown RBP21.24■□□□□ 0.99
USE1-210ENST00000601662 BCANQ96GW7 911 aa21.23■□□□□ 0.99
USE1-210ENST00000601662 ARHGAP23Q9P227 1491 aa21.23■□□□□ 0.99
USE1-210ENST00000601662 ADGRB3O60242 1522 aa21.23■□□□□ 0.99
USE1-210ENST00000601662 FOXD1Q16676 465 aa21.22■□□□□ 0.99
USE1-210ENST00000601662 SLIT1O75093 1534 aa21.22■□□□□ 0.99
USE1-210ENST00000601662 MED14O60244 1454 aa21.21■□□□□ 0.99
USE1-210ENST00000601662 NUTM2DQ5VT03 806 aaPredicted RBP21.21■□□□□ 0.99
USE1-210ENST00000601662 FBXO41Q8TF61 875 aa21.21■□□□□ 0.99
USE1-210ENST00000601662 LTBP4Q8N2S1 1624 aa21.19■□□□□ 0.98
USE1-210ENST00000601662 PPP1R15AO75807 674 aaPredicted RBP21.19■□□□□ 0.98
USE1-210ENST00000601662 IQGAP1P46940 1657 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms