RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 FAM135AQ9P2D6 1515 aa25.85■■□□□ 1.73
TRIM28-215ENST00000601150 RRP7BPQ9NSQ0 103 aa25.85■■□□□ 1.73
TRIM28-215ENST00000601150 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.84■■□□□ 1.73
TRIM28-215ENST00000601150 PREX1Q8TCU6 1659 aa25.83■■□□□ 1.73
TRIM28-215ENST00000601150 SETD1BQ9UPS6 1966 aaKnown RBP25.82■■□□□ 1.72
TRIM28-215ENST00000601150 NCOA1Q15788 1441 aa25.82■■□□□ 1.72
TRIM28-215ENST00000601150 ERBINQ96RT1 1412 aa25.82■■□□□ 1.72
TRIM28-215ENST00000601150 KDM5DQ9BY66 1539 aa25.82■■□□□ 1.72
TRIM28-215ENST00000601150 ZMYM3Q14202 1370 aa25.82■■□□□ 1.72
TRIM28-215ENST00000601150 LMTK3Q96Q04 1460 aa25.8■■□□□ 1.72
TRIM28-215ENST00000601150 RRBP1Q9P2E9 1410 aaKnown RBP25.79■■□□□ 1.72
TRIM28-215ENST00000601150 MROH1Q8NDA8 1641 aa25.78■■□□□ 1.72
TRIM28-215ENST00000601150 PTPRKQ15262 1439 aa25.78■■□□□ 1.72
TRIM28-215ENST00000601150 ZC3H13Q5T200 1668 aaKnown RBP25.77■■□□□ 1.72
TRIM28-215ENST00000601150 DEPDC5O75140 1603 aa25.75■■□□□ 1.71
TRIM28-215ENST00000601150 NPATQ14207 1427 aa25.75■■□□□ 1.71
TRIM28-215ENST00000601150 WASHC2CQ9Y4E1 1318 aa25.75■■□□□ 1.71
TRIM28-215ENST00000601150 PRDM15P57071 1507 aaPredicted RBP25.73■■□□□ 1.71
TRIM28-215ENST00000601150 ROCK1Q13464 1354 aa25.72■■□□□ 1.71
TRIM28-215ENST00000601150 CEP152O94986 1710 aa25.72■■□□□ 1.71
TRIM28-215ENST00000601150 ABCC3O15438 1527 aa25.72■■□□□ 1.71
TRIM28-215ENST00000601150 UHRF1BP1Q6BDS2 1440 aa25.71■■□□□ 1.71
TRIM28-215ENST00000601150 ITGAEP38570 1179 aa25.71■■□□□ 1.71
TRIM28-215ENST00000601150 ANKRD50Q9ULJ7 1429 aa25.68■■□□□ 1.7
TRIM28-215ENST00000601150 PZPP20742 1482 aa25.67■■□□□ 1.7
TRIM28-215ENST00000601150 CAMSAP1Q5T5Y3 1602 aa25.67■■□□□ 1.7
TRIM28-215ENST00000601150 MYO3AQ8NEV4 1616 aa25.65■■□□□ 1.7
TRIM28-215ENST00000601150 KANK1Q14678 1352 aa25.65■■□□□ 1.7
TRIM28-215ENST00000601150 HSPA2P54652 639 aa25.64■■□□□ 1.7
TRIM28-215ENST00000601150 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.64■■□□□ 1.72e-10■■■□□ 15.8
TRIM28-215ENST00000601150 ZNF142P52746 1687 aaPredicted RBP25.61■■□□□ 1.69
TRIM28-215ENST00000601150 VWDEQ8N2E2 1590 aa25.61■■□□□ 1.69
TRIM28-215ENST00000601150 FBXO31Q5XUX0 539 aaPredicted RBP25.59■■□□□ 1.69
TRIM28-215ENST00000601150 CFAP65Q6ZU64 1925 aaKnown RBP25.59■■□□□ 1.69
TRIM28-215ENST00000601150 UNC13BO14795 1591 aa25.58■■□□□ 1.69
TRIM28-215ENST00000601150 LMTK2Q8IWU2 1503 aa25.58■■□□□ 1.68
TRIM28-215ENST00000601150 TNRQ92752 1358 aa25.57■■□□□ 1.68
TRIM28-215ENST00000601150 CEP170BQ9Y4F5 1589 aaPredicted RBP25.56■■□□□ 1.68
TRIM28-215ENST00000601150 SPATA31D1Q6ZQQ2 1576 aa25.56■■□□□ 1.68
TRIM28-215ENST00000601150 ARHGAP31Q2M1Z3 1444 aa25.55■■□□□ 1.68
TRIM28-215ENST00000601150 GCC2Q8IWJ2 1684 aa25.54■■□□□ 1.68
TRIM28-215ENST00000601150 ERVK-7P63135 1459 aa25.53■■□□□ 1.68
TRIM28-215ENST00000601150 A2ML1A8K2U0 1454 aa25.52■■□□□ 1.68
TRIM28-215ENST00000601150 STRCQ7RTU9 1775 aa25.51■■□□□ 1.67
TRIM28-215ENST00000601150 EFCAB6Q5THR3 1501 aa25.51■■□□□ 1.67
TRIM28-215ENST00000601150 TET3O43151 1660 aa25.5■■□□□ 1.67
TRIM28-215ENST00000601150 NLRP1Q9C000 1473 aa25.49■■□□□ 1.67
TRIM28-215ENST00000601150 IQGAP3Q86VI3 1631 aa25.48■■□□□ 1.67
TRIM28-215ENST00000601150 NAIPQ13075 1403 aa25.47■■□□□ 1.67
TRIM28-215ENST00000601150 HFM1A2PYH4 1435 aa25.44■■□□□ 1.66
TRIM28-215ENST00000601150 PLA2R1Q13018 1463 aa25.42■■□□□ 1.66
TRIM28-215ENST00000601150 RPRD2Q5VT52 1461 aaKnown RBP25.42■■□□□ 1.66
TRIM28-215ENST00000601150 NUP155O75694 1391 aa25.41■■□□□ 1.66
TRIM28-215ENST00000601150 UGGT1Q9NYU2 1555 aa25.4■■□□□ 1.66
TRIM28-215ENST00000601150 DMRT2Q9Y5R5 561 aa25.39■■□□□ 1.66
TRIM28-215ENST00000601150 E9PCH4 1651 aa25.39■■□□□ 1.65
TRIM28-215ENST00000601150 SYNMO15061 1565 aa25.38■■□□□ 1.65
TRIM28-215ENST00000601150 UBR1Q8IWV7 1749 aa25.37■■□□□ 1.65
TRIM28-215ENST00000601150 NOS1P29475 1434 aa25.37■■□□□ 1.65
TRIM28-215ENST00000601150 THEMISQ8N1K5 641 aaPredicted RBP25.36■■□□□ 1.65
TRIM28-215ENST00000601150 POLR1AO95602 1720 aaPredicted RBP25.36■■□□□ 1.65
TRIM28-215ENST00000601150 PIK3C2BO00750 1634 aa25.34■■□□□ 1.65
TRIM28-215ENST00000601150 PTPRTO14522 1441 aa25.34■■□□□ 1.65
TRIM28-215ENST00000601150 PKD2Q13563 968 aa25.33■■□□□ 1.65
TRIM28-215ENST00000601150 NCKAP5LQ9HCH0 1330 aa25.33■■□□□ 1.64
TRIM28-215ENST00000601150 KDM5AP29375 1690 aaKnown RBP25.32■■□□□ 1.64
TRIM28-215ENST00000601150 IDI1Q13907 227 aa25.27■■□□□ 1.64
TRIM28-215ENST00000601150 TRIM52Q96A61 297 aa25.26■■□□□ 1.63
TRIM28-215ENST00000601150 SLC52A1Q9NWF4 448 aa25.26■■□□□ 1.63
TRIM28-215ENST00000601150 NEURL4Q96JN8 1562 aa25.26■■□□□ 1.63
TRIM28-215ENST00000601150 ANKLE2Q86XL3 938 aa25.25■■□□□ 1.63
TRIM28-215ENST00000601150 SPHKAPQ2M3C7 1700 aa25.25■■□□□ 1.63
TRIM28-215ENST00000601150 ADGRB3O60242 1522 aa25.24■■□□□ 1.63
TRIM28-215ENST00000601150 STAG3Q9UJ98 1225 aa25.24■■□□□ 1.63
TRIM28-215ENST00000601150 SLIT1O75093 1534 aa25.22■■□□□ 1.63
TRIM28-215ENST00000601150 MYO5BQ9ULV0 1848 aa25.21■■□□□ 1.63
TRIM28-215ENST00000601150 ARHGAP23Q9P227 1491 aa25.21■■□□□ 1.63
TRIM28-215ENST00000601150 SETD5Q9C0A6 1442 aa25.2■■□□□ 1.63
TRIM28-215ENST00000601150 MED14O60244 1454 aa25.2■■□□□ 1.62
TRIM28-215ENST00000601150 IQGAP1P46940 1657 aa25.18■■□□□ 1.62
TRIM28-215ENST00000601150 TMEM131LA2VDJ0 1609 aa25.18■■□□□ 1.62
TRIM28-215ENST00000601150 NPHP4O75161 1426 aaPredicted RBP25.17■■□□□ 1.62
TRIM28-215ENST00000601150 TMEM2Q9UHN6 1383 aa25.17■■□□□ 1.62
TRIM28-215ENST00000601150 ACIN1Q9UKV3 1341 aaKnown RBP25.16■■□□□ 1.62
TRIM28-215ENST00000601150 SCAF11Q99590 1463 aaKnown RBP25.16■■□□□ 1.62
TRIM28-215ENST00000601150 SLC4A1APQ9BWU0 796 aaKnown RBP25.15■■□□□ 1.62
TRIM28-215ENST00000601150 TRPM2O94759 1503 aa25.13■■□□□ 1.61
TRIM28-215ENST00000601150 TXNDC2Q86VQ3 553 aa25.13■■□□□ 1.61
TRIM28-215ENST00000601150 EID1Q9Y6B2 187 aa25.13■■□□□ 1.61
TRIM28-215ENST00000601150 LTKP29376 864 aa25.11■■□□□ 1.61
TRIM28-215ENST00000601150 RAB3GAP2Q9H2M9 1393 aa25.1■■□□□ 1.61
TRIM28-215ENST00000601150 LTBP4Q8N2S1 1624 aa25.1■■□□□ 1.61
TRIM28-215ENST00000601150 CLTCL1P53675 1640 aa25.09■■□□□ 1.61
TRIM28-215ENST00000601150 CHGAP10645 457 aaKnown RBP25.09■■□□□ 1.61
TRIM28-215ENST00000601150 KIF1BO60333 1816 aa25.07■■□□□ 1.6
TRIM28-215ENST00000601150 CERKQ8TCT0 537 aa25.07■■□□□ 1.6
TRIM28-215ENST00000601150 ZNF335Q9H4Z2 1342 aaPredicted RBP25.07■■□□□ 1.6
TRIM28-215ENST00000601150 MPHOSPH9Q99550 1183 aa25.06■■□□□ 1.6
TRIM28-215ENST00000601150 ZFYVE9O95405 1425 aa25.05■■□□□ 1.6
TRIM28-215ENST00000601150 RIMS2Q9UQ26 1411 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms