RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 DEPDC5O75140 1603 aa21.37■■□□□ 1.01
UPF1-211ENST00000600868 UNC13BO14795 1591 aa21.36■■□□□ 1.01
UPF1-211ENST00000600868 ARID4BQ4LE39 1312 aaPredicted RBP21.32■■□□□ 1
UPF1-211ENST00000600868 PRDM15P57071 1507 aaPredicted RBP21.32■■□□□ 1
UPF1-211ENST00000600868 MROH1Q8NDA8 1641 aa21.32■■□□□ 1
UPF1-211ENST00000600868 PPP6R1Q9UPN7 881 aa21.31■■□□□ 1
UPF1-211ENST00000600868 KDM5DQ9BY66 1539 aa21.3■■□□□ 1
UPF1-211ENST00000600868 GGT6Q6P531 493 aa21.3■■□□□ 1
UPF1-211ENST00000600868 TRIM52Q96A61 297 aa21.3■■□□□ 1
UPF1-211ENST00000600868 NUP155O75694 1391 aa21.3■■□□□ 1
UPF1-211ENST00000600868 VWDEQ8N2E2 1590 aa21.29■■□□□ 1
UPF1-211ENST00000600868 KANK1Q14678 1352 aa21.29■■□□□ 1
UPF1-211ENST00000600868 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.29■■□□□ 13e-7■■■□□ 17.8
UPF1-211ENST00000600868 IQGAP3Q86VI3 1631 aa21.27■■□□□ 1
UPF1-211ENST00000600868 FAM135AQ9P2D6 1515 aa21.27■■□□□ 1
UPF1-211ENST00000600868 MLECQ14165 292 aa21.25■□□□□ 0.99
UPF1-211ENST00000600868 PZPP20742 1482 aa21.24■□□□□ 0.99
UPF1-211ENST00000600868 LMTK2Q8IWU2 1503 aa21.23■□□□□ 0.99
UPF1-211ENST00000600868 WASHC2CQ9Y4E1 1318 aa21.23■□□□□ 0.99
UPF1-211ENST00000600868 ZC3H13Q5T200 1668 aaKnown RBP21.22■□□□□ 0.99
UPF1-211ENST00000600868 ABCC3O15438 1527 aa21.22■□□□□ 0.99
UPF1-211ENST00000600868 MPHOSPH9Q99550 1183 aa21.21■□□□□ 0.99
UPF1-211ENST00000600868 SLC4A1APQ9BWU0 796 aaKnown RBP21.2■□□□□ 0.98
UPF1-211ENST00000600868 CEP152O94986 1710 aa21.19■□□□□ 0.98
UPF1-211ENST00000600868 TET3O43151 1660 aa21.18■□□□□ 0.98
UPF1-211ENST00000600868 ESF1Q9H501 851 aaKnown RBP21.18■□□□□ 0.98
UPF1-211ENST00000600868 CNTLNQ9NXG0 1405 aa21.18■□□□□ 0.98
UPF1-211ENST00000600868 ADAMTSL3P82987 1691 aa21.18■□□□□ 0.98
UPF1-211ENST00000600868 DHX57Q6P158 1386 aaKnown RBP21.16■□□□□ 0.98
UPF1-211ENST00000600868 CLTCQ00610 1675 aaKnown RBP21.15■□□□□ 0.98
UPF1-211ENST00000600868 EFCAB6Q5THR3 1501 aa21.15■□□□□ 0.98
UPF1-211ENST00000600868 FER1L4A9Z1Z3 1794 aa21.15■□□□□ 0.98
UPF1-211ENST00000600868 CAMSAP1Q5T5Y3 1602 aa21.15■□□□□ 0.98
UPF1-211ENST00000600868 ARHGAP31Q2M1Z3 1444 aa21.14■□□□□ 0.98
UPF1-211ENST00000600868 PKD2Q13563 968 aa21.14■□□□□ 0.97
UPF1-211ENST00000600868 MROH2AA6NES4 1674 aa21.13■□□□□ 0.97
UPF1-211ENST00000600868 MADDQ8WXG6 1647 aa21.12■□□□□ 0.97
UPF1-211ENST00000600868 RPRD2Q5VT52 1461 aaKnown RBP21.12■□□□□ 0.97
UPF1-211ENST00000600868 E9PCH4 1651 aa21.12■□□□□ 0.97
UPF1-211ENST00000600868 ZMYM3Q14202 1370 aa21.1■□□□□ 0.97
UPF1-211ENST00000600868 NPATQ14207 1427 aa21.1■□□□□ 0.97
UPF1-211ENST00000600868 RIMS1Q86UR5 1692 aaKnown RBP21.06■□□□□ 0.96
UPF1-211ENST00000600868 FOXD1Q16676 465 aa21.06■□□□□ 0.96
UPF1-211ENST00000600868 PTPRTO14522 1441 aa21.04■□□□□ 0.96
UPF1-211ENST00000600868 ANKRD30BQ9BXX2 1392 aa21.04■□□□□ 0.96
UPF1-211ENST00000600868 CLSPNQ9HAW4 1339 aa21.04■□□□□ 0.96
UPF1-211ENST00000600868 C3P01024 1663 aa21.03■□□□□ 0.96
UPF1-211ENST00000600868 CCER1Q8TC90 406 aaPredicted RBP21.03■□□□□ 0.96
UPF1-211ENST00000600868 NOS1P29475 1434 aa21.02■□□□□ 0.96
UPF1-211ENST00000600868 ERVK-7P63135 1459 aa21.01■□□□□ 0.95
UPF1-211ENST00000600868 PLA2R1Q13018 1463 aa21.01■□□□□ 0.95
UPF1-211ENST00000600868 KDM4FA0A1W2PPD8 638 aa21.01■□□□□ 0.95
UPF1-211ENST00000600868 PREX1Q8TCU6 1659 aa21.01■□□□□ 0.95
UPF1-211ENST00000600868 SPHKAPQ2M3C7 1700 aa21.01■□□□□ 0.95
UPF1-211ENST00000600868 FBXO31Q5XUX0 539 aaPredicted RBP21■□□□□ 0.95
UPF1-211ENST00000600868 SPATA31D1Q6ZQQ2 1576 aa21■□□□□ 0.95
UPF1-211ENST00000600868 PTPRMP28827 1452 aa21■□□□□ 0.95
UPF1-211ENST00000600868 CFAP65Q6ZU64 1925 aaKnown RBP21■□□□□ 0.95
UPF1-211ENST00000600868 TRPM2O94759 1503 aa20.99■□□□□ 0.95
UPF1-211ENST00000600868 CEBPAP49715 358 aaPredicted RBP20.98■□□□□ 0.95
UPF1-211ENST00000600868 SYNMO15061 1565 aa20.96■□□□□ 0.95
UPF1-211ENST00000600868 SLC52A1Q9NWF4 448 aa20.94■□□□□ 0.94
UPF1-211ENST00000600868 TNRQ92752 1358 aa20.94■□□□□ 0.94
UPF1-211ENST00000600868 CCDC144AA2RUR9 1427 aa20.94■□□□□ 0.94
UPF1-211ENST00000600868 PIK3C2BO00750 1634 aa20.92■□□□□ 0.94
UPF1-211ENST00000600868 CLTCL1P53675 1640 aa20.9■□□□□ 0.94
UPF1-211ENST00000600868 PLPPR3Q6T4P5 718 aa20.9■□□□□ 0.94
UPF1-211ENST00000600868 SIN3AQ96ST3 1273 aa20.89■□□□□ 0.93
UPF1-211ENST00000600868 UGGT1Q9NYU2 1555 aa20.89■□□□□ 0.93
UPF1-211ENST00000600868 IDI1Q13907 227 aa20.88■□□□□ 0.93
UPF1-211ENST00000600868 SETD1BQ9UPS6 1966 aaKnown RBP20.88■□□□□ 0.93
UPF1-211ENST00000600868 NLRP1Q9C000 1473 aa20.88■□□□□ 0.93
UPF1-211ENST00000600868 NEUROD1Q13562 356 aa20.84■□□□□ 0.93
UPF1-211ENST00000600868 NEURL4Q96JN8 1562 aa20.84■□□□□ 0.93
UPF1-211ENST00000600868 KIF1BO60333 1816 aa20.83■□□□□ 0.93
UPF1-211ENST00000600868 MYO3AQ8NEV4 1616 aa20.83■□□□□ 0.93
UPF1-211ENST00000600868 SPATA31E1Q6ZUB1 1445 aa20.82■□□□□ 0.92
UPF1-211ENST00000600868 KDM5AP29375 1690 aaKnown RBP20.81■□□□□ 0.92
UPF1-211ENST00000600868 ADGRB3O60242 1522 aa20.8■□□□□ 0.92
UPF1-211ENST00000600868 TMEM131LA2VDJ0 1609 aa20.8■□□□□ 0.92
UPF1-211ENST00000600868 A2ML1A8K2U0 1454 aa20.8■□□□□ 0.92
UPF1-211ENST00000600868 TIMELESSQ9UNS1 1208 aa20.78■□□□□ 0.92
UPF1-211ENST00000600868 UHRF1BP1Q6BDS2 1440 aa20.78■□□□□ 0.92
UPF1-211ENST00000600868 ZNF142P52746 1687 aaPredicted RBP20.77■□□□□ 0.92
UPF1-211ENST00000600868 CEP170BQ9Y4F5 1589 aaPredicted RBP20.77■□□□□ 0.92
UPF1-211ENST00000600868 CHGAP10645 457 aaKnown RBP20.77■□□□□ 0.92
UPF1-211ENST00000600868 STAG3Q9UJ98 1225 aa20.77■□□□□ 0.92
UPF1-211ENST00000600868 UBR1Q8IWV7 1749 aa20.76■□□□□ 0.91
UPF1-211ENST00000600868 TONSLQ96HA7 1378 aa20.75■□□□□ 0.91
UPF1-211ENST00000600868 RGL3Q3MIN7 710 aa20.75■□□□□ 0.91
UPF1-211ENST00000600868 RPGRIP1LQ68CZ1 1315 aa20.74■□□□□ 0.91
UPF1-211ENST00000600868 MYO5BQ9ULV0 1848 aa20.74■□□□□ 0.91
UPF1-211ENST00000600868 ZNF326Q5BKZ1 582 aaKnown RBP20.72■□□□□ 0.91
UPF1-211ENST00000600868 THEMISQ8N1K5 641 aaPredicted RBP20.72■□□□□ 0.91
UPF1-211ENST00000600868 L3MBTL2Q969R5 705 aa20.72■□□□□ 0.91
UPF1-211ENST00000600868 STAC3Q96MF2 364 aa20.7■□□□□ 0.9
UPF1-211ENST00000600868 TMEM2Q9UHN6 1383 aa20.69■□□□□ 0.9
UPF1-211ENST00000600868 ARHGAP23Q9P227 1491 aa20.68■□□□□ 0.9
UPF1-211ENST00000600868 SLIT1O75093 1534 aa20.68■□□□□ 0.9
UPF1-211ENST00000600868 NEXMIFQ5QGS0 1516 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms