RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 PREX1Q8TCU6 1659 aa25.05■■□□□ 1.6
USHBP1-210ENST00000600286 GGT6Q6P531 493 aa25.03■■□□□ 1.6
USHBP1-210ENST00000600286 C3P01024 1663 aa25.03■■□□□ 1.6
USHBP1-210ENST00000600286 SETD1BQ9UPS6 1966 aaKnown RBP25.02■■□□□ 1.6
USHBP1-210ENST00000600286 ERBINQ96RT1 1412 aa25.01■■□□□ 1.59
USHBP1-210ENST00000600286 ANKRD50Q9ULJ7 1429 aa24.99■■□□□ 1.59
USHBP1-210ENST00000600286 PPP6R1Q9UPN7 881 aa24.99■■□□□ 1.59
USHBP1-210ENST00000600286 CEBPAP49715 358 aaPredicted RBP24.95■■□□□ 1.58
USHBP1-210ENST00000600286 HSPA2P54652 639 aa24.95■■□□□ 1.58
USHBP1-210ENST00000600286 MROH2AA6NES4 1674 aa24.94■■□□□ 1.58
USHBP1-210ENST00000600286 ACIN1Q9UKV3 1341 aaKnown RBP24.94■■□□□ 1.58
USHBP1-210ENST00000600286 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.93■■□□□ 1.58
USHBP1-210ENST00000600286 HFM1A2PYH4 1435 aa24.93■■□□□ 1.58
USHBP1-210ENST00000600286 STRCQ7RTU9 1775 aa24.93■■□□□ 1.58
USHBP1-210ENST00000600286 KANK1Q14678 1352 aa24.93■■□□□ 1.58
USHBP1-210ENST00000600286 PLPPR3Q6T4P5 718 aa24.91■■□□□ 1.58
USHBP1-210ENST00000600286 NAIPQ13075 1403 aa24.91■■□□□ 1.58
USHBP1-210ENST00000600286 WASHC2CQ9Y4E1 1318 aa24.9■■□□□ 1.58
USHBP1-210ENST00000600286 EIF2AK4Q9P2K8 1649 aaKnown RBP24.89■■□□□ 1.57
USHBP1-210ENST00000600286 SETD5Q9C0A6 1442 aa24.86■■□□□ 1.57
USHBP1-210ENST00000600286 CNTLNQ9NXG0 1405 aa24.86■■□□□ 1.57
USHBP1-210ENST00000600286 TRIM52Q96A61 297 aa24.85■■□□□ 1.57
USHBP1-210ENST00000600286 CLTCQ00610 1675 aaKnown RBP24.83■■□□□ 1.57
USHBP1-210ENST00000600286 UHRF1BP1Q6BDS2 1440 aa24.82■■□□□ 1.56
USHBP1-210ENST00000600286 NUP155O75694 1391 aa24.8■■□□□ 1.56
USHBP1-210ENST00000600286 GCC2Q8IWJ2 1684 aa24.78■■□□□ 1.56
USHBP1-210ENST00000600286 NPATQ14207 1427 aa24.78■■□□□ 1.56
USHBP1-210ENST00000600286 FAM135AQ9P2D6 1515 aa24.78■■□□□ 1.56
USHBP1-210ENST00000600286 HRCP23327 699 aa24.78■■□□□ 1.56
USHBP1-210ENST00000600286 RNF17Q9BXT8 1623 aaKnown RBP24.78■■□□□ 1.56
USHBP1-210ENST00000600286 FBXO41Q8TF61 875 aa24.77■■□□□ 1.56
USHBP1-210ENST00000600286 ZMYM3Q14202 1370 aa24.76■■□□□ 1.55
USHBP1-210ENST00000600286 PCGF6Q9BYE7 350 aa24.75■■□□□ 1.55
USHBP1-210ENST00000600286 KDM5DQ9BY66 1539 aa24.75■■□□□ 1.55
USHBP1-210ENST00000600286 RAB3GAP2Q9H2M9 1393 aa24.74■■□□□ 1.55
USHBP1-210ENST00000600286 ZNF142P52746 1687 aaPredicted RBP24.74■■□□□ 1.55
USHBP1-210ENST00000600286 PRDM15P57071 1507 aaPredicted RBP24.73■■□□□ 1.55
USHBP1-210ENST00000600286 DEPDC5O75140 1603 aa24.71■■□□□ 1.55
USHBP1-210ENST00000600286 MYO3AQ8NEV4 1616 aa24.7■■□□□ 1.54
USHBP1-210ENST00000600286 SLC4A1APQ9BWU0 796 aaKnown RBP24.69■■□□□ 1.54
USHBP1-210ENST00000600286 UNC13BO14795 1591 aa24.68■■□□□ 1.54
USHBP1-210ENST00000600286 ABCC3O15438 1527 aa24.68■■□□□ 1.54
USHBP1-210ENST00000600286 MROH1Q8NDA8 1641 aa24.68■■□□□ 1.54
USHBP1-210ENST00000600286 ZC3H13Q5T200 1668 aaKnown RBP24.66■■□□□ 1.54
USHBP1-210ENST00000600286 PTPRTO14522 1441 aa24.66■■□□□ 1.54
USHBP1-210ENST00000600286 LMTK2Q8IWU2 1503 aa24.65■■□□□ 1.54
USHBP1-210ENST00000600286 VWDEQ8N2E2 1590 aa24.63■■□□□ 1.53
USHBP1-210ENST00000600286 CAMSAP1Q5T5Y3 1602 aa24.63■■□□□ 1.53
USHBP1-210ENST00000600286 ARHGAP31Q2M1Z3 1444 aa24.62■■□□□ 1.53
USHBP1-210ENST00000600286 MPHOSPH9Q99550 1183 aa24.62■■□□□ 1.53
USHBP1-210ENST00000600286 CEP170BQ9Y4F5 1589 aaPredicted RBP24.62■■□□□ 1.53
USHBP1-210ENST00000600286 CERKQ8TCT0 537 aa24.61■■□□□ 1.53
USHBP1-210ENST00000600286 PZPP20742 1482 aa24.6■■□□□ 1.53
USHBP1-210ENST00000600286 PKD2Q13563 968 aa24.6■■□□□ 1.53
USHBP1-210ENST00000600286 DMRT2Q9Y5R5 561 aa24.6■■□□□ 1.53
USHBP1-210ENST00000600286 IQGAP3Q86VI3 1631 aa24.6■■□□□ 1.53
USHBP1-210ENST00000600286 FBXO31Q5XUX0 539 aaPredicted RBP24.59■■□□□ 1.53
USHBP1-210ENST00000600286 LTBP4Q8N2S1 1624 aa24.58■■□□□ 1.53
USHBP1-210ENST00000600286 CEP152O94986 1710 aa24.58■■□□□ 1.52
USHBP1-210ENST00000600286 PLA2R1Q13018 1463 aa24.57■■□□□ 1.52
USHBP1-210ENST00000600286 RPRD2Q5VT52 1461 aaKnown RBP24.57■■□□□ 1.52
USHBP1-210ENST00000600286 TET3O43151 1660 aa24.55■■□□□ 1.52
USHBP1-210ENST00000600286 EFCAB6Q5THR3 1501 aa24.55■■□□□ 1.52
USHBP1-210ENST00000600286 TNRQ92752 1358 aa24.54■■□□□ 1.52
USHBP1-210ENST00000600286 A2ML1A8K2U0 1454 aa24.51■■□□□ 1.51
USHBP1-210ENST00000600286 SLC52A1Q9NWF4 448 aa24.5■■□□□ 1.51
USHBP1-210ENST00000600286 ERVK-7P63135 1459 aa24.49■■□□□ 1.51
USHBP1-210ENST00000600286 STAG3Q9UJ98 1225 aa24.48■■□□□ 1.51
USHBP1-210ENST00000600286 POLR1AO95602 1720 aaPredicted RBP24.45■■□□□ 1.5
USHBP1-210ENST00000600286 FOXD1Q16676 465 aa24.45■■□□□ 1.5
USHBP1-210ENST00000600286 NOS1P29475 1434 aa24.44■■□□□ 1.5
USHBP1-210ENST00000600286 NCKAP5LQ9HCH0 1330 aa24.44■■□□□ 1.5
USHBP1-210ENST00000600286 SPATA31D1Q6ZQQ2 1576 aa24.44■■□□□ 1.5
USHBP1-210ENST00000600286 NEURL4Q96JN8 1562 aa24.43■■□□□ 1.5
USHBP1-210ENST00000600286 IQSEC2Q5JU85 1478 aa24.43■■□□□ 1.5
USHBP1-210ENST00000600286 NLRP1Q9C000 1473 aa24.43■■□□□ 1.5
USHBP1-210ENST00000600286 E9PCH4 1651 aa24.42■■□□□ 1.5
USHBP1-210ENST00000600286 CFAP65Q6ZU64 1925 aaKnown RBP24.41■■□□□ 1.5
USHBP1-210ENST00000600286 IDI1Q13907 227 aa24.41■■□□□ 1.5
USHBP1-210ENST00000600286 CHGAP10645 457 aaKnown RBP24.4■■□□□ 1.5
USHBP1-210ENST00000600286 THEMISQ8N1K5 641 aaPredicted RBP24.4■■□□□ 1.5
USHBP1-210ENST00000600286 CCDC144AA2RUR9 1427 aa24.35■■□□□ 1.49
USHBP1-210ENST00000600286 UGGT1Q9NYU2 1555 aa24.33■■□□□ 1.49
USHBP1-210ENST00000600286 HDGFP51858 240 aaKnown RBP24.33■■□□□ 1.49
USHBP1-210ENST00000600286 ZNF335Q9H4Z2 1342 aaPredicted RBP24.33■■□□□ 1.48
USHBP1-210ENST00000600286 DHX57Q6P158 1386 aaKnown RBP24.31■■□□□ 1.48
USHBP1-210ENST00000600286 TRPM2O94759 1503 aa24.31■■□□□ 1.48
USHBP1-210ENST00000600286 SYNMO15061 1565 aa24.31■■□□□ 1.48
USHBP1-210ENST00000600286 SPHKAPQ2M3C7 1700 aa24.31■■□□□ 1.48
USHBP1-210ENST00000600286 MED14O60244 1454 aa24.31■■□□□ 1.48
USHBP1-210ENST00000600286 ANKRD30BQ9BXX2 1392 aa24.3■■□□□ 1.48
USHBP1-210ENST00000600286 UBR1Q8IWV7 1749 aa24.3■■□□□ 1.48
USHBP1-210ENST00000600286 ZNF326Q5BKZ1 582 aaKnown RBP24.29■■□□□ 1.48
USHBP1-210ENST00000600286 EID1Q9Y6B2 187 aa24.28■■□□□ 1.48
USHBP1-210ENST00000600286 ANKLE2Q86XL3 938 aa24.26■■□□□ 1.47
USHBP1-210ENST00000600286 CCER1Q8TC90 406 aaPredicted RBP24.26■■□□□ 1.47
USHBP1-210ENST00000600286 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.24■■□□□ 1.47
USHBP1-210ENST00000600286 IQGAP1P46940 1657 aa24.24■■□□□ 1.47
USHBP1-210ENST00000600286 PIK3C2BO00750 1634 aa24.21■■□□□ 1.47
USHBP1-210ENST00000600286 PPP1R15AO75807 674 aaPredicted RBP24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms