RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	RIMS1	Q86UR5	1692 aa	Known RBP	33.15	■■■□□ 2.9
LTBP4-227	ENST00000600026	ANKRD50	Q9ULJ7	1429 aa		33.13	■■■□□ 2.89
LTBP4-227	ENST00000600026	DEPDC5	O75140	1603 aa		33.11	■■■□□ 2.89
LTBP4-227	ENST00000600026	MROH1	Q8NDA8	1641 aa		33.11	■■■□□ 2.89
LTBP4-227	ENST00000600026	GGT6	Q6P531	493 aa		33.08	■■■□□ 2.89
LTBP4-227	ENST00000600026	NAIP	Q13075	1403 aa		33.07	■■■□□ 2.88
LTBP4-227	ENST00000600026	CLTC	Q00610	1675 aa	Known RBP	33.07	■■■□□ 2.88
LTBP4-227	ENST00000600026	HFM1	A2PYH4	1435 aa		33.06	■■■□□ 2.88
LTBP4-227	ENST00000600026	PRDM15	P57071	1507 aa	Predicted RBP	33.06	■■■□□ 2.88
LTBP4-227	ENST00000600026	FAM135A	Q9P2D6	1515 aa		33.02	■■■□□ 2.88
LTBP4-227	ENST00000600026	MROH2A	A6NES4	1674 aa		33.02	■■■□□ 2.88
LTBP4-227	ENST00000600026	ZC3H13	Q5T200	1668 aa	Known RBP	33.01	■■■□□ 2.88
LTBP4-227	ENST00000600026	UNC13B	O14795	1591 aa		33.01	■■■□□ 2.88
LTBP4-227	ENST00000600026	KDM5D	Q9BY66	1539 aa		33.01	■■■□□ 2.87
LTBP4-227	ENST00000600026	CEP152	O94986	1710 aa		33	■■■□□ 2.87
LTBP4-227	ENST00000600026	CNTLN	Q9NXG0	1405 aa		32.99	■■■□□ 2.87
LTBP4-227	ENST00000600026	PTPRM	P28827	1452 aa		32.99	■■■□□ 2.87
LTBP4-227	ENST00000600026	PPP6R1	Q9UPN7	881 aa		32.97	■■■□□ 2.87
LTBP4-227	ENST00000600026	ESF1	Q9H501	851 aa	Known RBP	32.96	■■■□□ 2.87
LTBP4-227	ENST00000600026	C3	P01024	1663 aa		32.96	■■■□□ 2.87
LTBP4-227	ENST00000600026	ABCC3	O15438	1527 aa		32.96	■■■□□ 2.87
LTBP4-227	ENST00000600026	FBXO41	Q8TF61	875 aa		32.94	■■■□□ 2.86
LTBP4-227	ENST00000600026	PCGF6	Q9BYE7	350 aa		32.94	■■■□□ 2.86
LTBP4-227	ENST00000600026	VWDE	Q8N2E2	1590 aa		32.94	■■■□□ 2.86
LTBP4-227	ENST00000600026	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.91	■■■□□ 2.86
LTBP4-227	ENST00000600026	CAMSAP1	Q5T5Y3	1602 aa		32.91	■■■□□ 2.86
LTBP4-227	ENST00000600026	WASHC2C	Q9Y4E1	1318 aa		32.89	■■■□□ 2.86
LTBP4-227	ENST00000600026	KANK1	Q14678	1352 aa		32.88	■■■□□ 2.85
LTBP4-227	ENST00000600026	IQGAP3	Q86VI3	1631 aa		32.87	■■■□□ 2.85
LTBP4-227	ENST00000600026	LMTK2	Q8IWU2	1503 aa		32.86	■■■□□ 2.85
LTBP4-227	ENST00000600026	SETD5	Q9C0A6	1442 aa		32.85	■■■□□ 2.85
LTBP4-227	ENST00000600026	ZMYM3	Q14202	1370 aa		32.83	■■■□□ 2.85
LTBP4-227	ENST00000600026	PLPPR3	Q6T4P5	718 aa		32.82	■■■□□ 2.84
LTBP4-227	ENST00000600026	TET3	O43151	1660 aa		32.81	■■■□□ 2.84
LTBP4-227	ENST00000600026	CEBPA	P49715	358 aa	Predicted RBP	32.8	■■■□□ 2.84
LTBP4-227	ENST00000600026	EFCAB6	Q5THR3	1501 aa		32.78	■■■□□ 2.84
LTBP4-227	ENST00000600026	NUP155	O75694	1391 aa		32.78	■■■□□ 2.84
LTBP4-227	ENST00000600026	PZP	P20742	1482 aa		32.78	■■■□□ 2.84
LTBP4-227	ENST00000600026	RAB3GAP2	Q9H2M9	1393 aa		32.76	■■■□□ 2.83
LTBP4-227	ENST00000600026	ARHGAP31	Q2M1Z3	1444 aa		32.73	■■■□□ 2.83
LTBP4-227	ENST00000600026	CFAP65	Q6ZU64	1925 aa	Known RBP	32.72	■■■□□ 2.83
LTBP4-227	ENST00000600026	PREX1	Q8TCU6	1659 aa		32.72	■■■□□ 2.83
LTBP4-227	ENST00000600026		E9PCH4	1651 aa		32.7	■■■□□ 2.83
LTBP4-227	ENST00000600026	NPAT	Q14207	1427 aa		32.69	■■■□□ 2.82
LTBP4-227	ENST00000600026	TRIM52	Q96A61	297 aa		32.68	■■■□□ 2.82
LTBP4-227	ENST00000600026	SPATA31D1	Q6ZQQ2	1576 aa		32.67	■■■□□ 2.82
LTBP4-227	ENST00000600026	ERVK-7	P63135	1459 aa		32.66	■■■□□ 2.82
LTBP4-227	ENST00000600026	SETD1B	Q9UPS6	1966 aa	Known RBP	32.65	■■■□□ 2.82
LTBP4-227	ENST00000600026	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.64	■■■□□ 2.82
LTBP4-227	ENST00000600026	MYO3A	Q8NEV4	1616 aa		32.63	■■■□□ 2.81
LTBP4-227	ENST00000600026	RPRD2	Q5VT52	1461 aa	Known RBP	32.63	■■■□□ 2.81
LTBP4-227	ENST00000600026	ACIN1	Q9UKV3	1341 aa	Known RBP	32.6	■■■□□ 2.81
LTBP4-227	ENST00000600026	TNR	Q92752	1358 aa		32.58	■■■□□ 2.81
LTBP4-227	ENST00000600026	HRC	P23327	699 aa		32.56	■■■□□ 2.8
LTBP4-227	ENST00000600026	SYNM	O15061	1565 aa		32.55	■■■□□ 2.8
LTBP4-227	ENST00000600026	ZNF142	P52746	1687 aa	Predicted RBP	32.55	■■■□□ 2.8
LTBP4-227	ENST00000600026	LMTK3	Q96Q04	1460 aa		32.54	■■■□□ 2.8
LTBP4-227	ENST00000600026	SPHKAP	Q2M3C7	1700 aa		32.54	■■■□□ 2.8
LTBP4-227	ENST00000600026	NOS1	P29475	1434 aa		32.54	■■■□□ 2.8
LTBP4-227	ENST00000600026	UHRF1BP1	Q6BDS2	1440 aa		32.53	■■■□□ 2.8
LTBP4-227	ENST00000600026	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.53	■■■□□ 2.8
LTBP4-227	ENST00000600026	HSPA2	P54652	639 aa		32.51	■■■□□ 2.79
LTBP4-227	ENST00000600026	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	32.5	■■■□□ 2.79
LTBP4-227	ENST00000600026	MPHOSPH9	Q99550	1183 aa		32.48	■■■□□ 2.79
LTBP4-227	ENST00000600026	NLRP1	Q9C000	1473 aa		32.48	■■■□□ 2.79
LTBP4-227	ENST00000600026	PKD2	Q13563	968 aa		32.47	■■■□□ 2.79
LTBP4-227	ENST00000600026	A2ML1	A8K2U0	1454 aa		32.45	■■■□□ 2.79
LTBP4-227	ENST00000600026	PIK3C2B	O00750	1634 aa		32.44	■■■□□ 2.78
LTBP4-227	ENST00000600026	PTPRT	O14522	1441 aa		32.43	■■■□□ 2.78
LTBP4-227	ENST00000600026	UGGT1	Q9NYU2	1555 aa		32.42	■■■□□ 2.78
LTBP4-227	ENST00000600026	TRPM2	O94759	1503 aa		32.41	■■■□□ 2.78
LTBP4-227	ENST00000600026	UBR1	Q8IWV7	1749 aa		32.4	■■■□□ 2.78
LTBP4-227	ENST00000600026	FOXD1	Q16676	465 aa		32.38	■■■□□ 2.77
LTBP4-227	ENST00000600026	PLA2R1	Q13018	1463 aa		32.36	■■■□□ 2.77
LTBP4-227	ENST00000600026	CLTCL1	P53675	1640 aa		32.36	■■■□□ 2.77
LTBP4-227	ENST00000600026	KDM5A	P29375	1690 aa	Known RBP	32.35	■■■□□ 2.77
LTBP4-227	ENST00000600026	ADGRB3	O60242	1522 aa		32.34	■■■□□ 2.77
LTBP4-227	ENST00000600026	SLC52A1	Q9NWF4	448 aa		32.33	■■■□□ 2.77
LTBP4-227	ENST00000600026	MYO5B	Q9ULV0	1848 aa		32.33	■■■□□ 2.77
LTBP4-227	ENST00000600026	IDI1	Q13907	227 aa		32.32	■■■□□ 2.76
LTBP4-227	ENST00000600026	CERK	Q8TCT0	537 aa		32.28	■■■□□ 2.76
LTBP4-227	ENST00000600026	TMEM131L	A2VDJ0	1609 aa		32.28	■■■□□ 2.76
LTBP4-227	ENST00000600026	KIF1B	O60333	1816 aa		32.27	■■■□□ 2.76
LTBP4-227	ENST00000600026	STRC	Q7RTU9	1775 aa		32.22	■■■□□ 2.75
LTBP4-227	ENST00000600026	POLR1A	O95602	1720 aa	Predicted RBP	32.21	■■■□□ 2.75
LTBP4-227	ENST00000600026	STAG3	Q9UJ98	1225 aa		32.21	■■■□□ 2.75
LTBP4-227	ENST00000600026	CCDC144A	A2RUR9	1427 aa		32.2	■■■□□ 2.75
LTBP4-227	ENST00000600026	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.2	■■■□□ 2.75
LTBP4-227	ENST00000600026	DHX57	Q6P158	1386 aa	Known RBP	32.19	■■■□□ 2.74
LTBP4-227	ENST00000600026	ANKRD30B	Q9BXX2	1392 aa		32.19	■■■□□ 2.74
LTBP4-227	ENST00000600026	SLIT1	O75093	1534 aa		32.18	■■■□□ 2.74
LTBP4-227	ENST00000600026	ILDR2	Q71H61	639 aa		32.18	■■■□□ 2.74
LTBP4-227	ENST00000600026	CHGA	P10645	457 aa	Known RBP	32.17	■■■□□ 2.74
LTBP4-227	ENST00000600026	ARHGAP23	Q9P227	1491 aa		32.16	■■■□□ 2.74
LTBP4-227	ENST00000600026	TMEM2	Q9UHN6	1383 aa		32.12	■■■□□ 2.73
LTBP4-227	ENST00000600026	NEURL4	Q96JN8	1562 aa		32.11	■■■□□ 2.73
LTBP4-227	ENST00000600026	CCER1	Q8TC90	406 aa	Predicted RBP	32.09	■■■□□ 2.73
LTBP4-227	ENST00000600026	ZFYVE9	O95405	1425 aa		32.07	■■■□□ 2.72
LTBP4-227	ENST00000600026	NCKAP5L	Q9HCH0	1330 aa		32.06	■■■□□ 2.72
LTBP4-227	ENST00000600026	SCAF11	Q99590	1463 aa	Known RBP	32.06	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms