RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 KIF3BO15066 747 aa29.97■■■□□ 2.39
SHKBP1-221ENST00000599833 CNTLNQ9NXG0 1405 aa29.96■■■□□ 2.39
SHKBP1-221ENST00000599833 GGT6Q6P531 493 aa29.95■■■□□ 2.39
SHKBP1-221ENST00000599833 DEPDC5O75140 1603 aa29.95■■■□□ 2.38
SHKBP1-221ENST00000599833 FAM135AQ9P2D6 1515 aa29.94■■■□□ 2.38
SHKBP1-221ENST00000599833 ROCK1Q13464 1354 aa29.92■■■□□ 2.38
SHKBP1-221ENST00000599833 CEBPAP49715 358 aaPredicted RBP29.91■■■□□ 2.38
SHKBP1-221ENST00000599833 PPP6R1Q9UPN7 881 aa29.91■■■□□ 2.38
SHKBP1-221ENST00000599833 PRDM15P57071 1507 aaPredicted RBP29.91■■■□□ 2.38
SHKBP1-221ENST00000599833 KDM5DQ9BY66 1539 aa29.91■■■□□ 2.38
SHKBP1-221ENST00000599833 ZMYM3Q14202 1370 aa29.87■■■□□ 2.37
SHKBP1-221ENST00000599833 ABCC3O15438 1527 aa29.86■■■□□ 2.37
SHKBP1-221ENST00000599833 ZC3H13Q5T200 1668 aaKnown RBP29.85■■■□□ 2.37
SHKBP1-221ENST00000599833 VWDEQ8N2E2 1590 aa29.85■■■□□ 2.37
SHKBP1-221ENST00000599833 LMTK3Q96Q04 1460 aa29.84■■■□□ 2.37
SHKBP1-221ENST00000599833 CEP152O94986 1710 aa29.83■■■□□ 2.37
SHKBP1-221ENST00000599833 ANKRD50Q9ULJ7 1429 aa29.82■■■□□ 2.36
SHKBP1-221ENST00000599833 SETD1BQ9UPS6 1966 aaKnown RBP29.81■■■□□ 2.36
SHKBP1-221ENST00000599833 ITGAEP38570 1179 aa29.81■■■□□ 2.36
SHKBP1-221ENST00000599833 PREX1Q8TCU6 1659 aa29.8■■■□□ 2.36
SHKBP1-221ENST00000599833 PLPPR3Q6T4P5 718 aa29.79■■■□□ 2.36
SHKBP1-221ENST00000599833 ESF1Q9H501 851 aaKnown RBP29.79■■■□□ 2.36
SHKBP1-221ENST00000599833 NPATQ14207 1427 aa29.78■■■□□ 2.36
SHKBP1-221ENST00000599833 PZPP20742 1482 aa29.76■■■□□ 2.35
SHKBP1-221ENST00000599833 CAMSAP1Q5T5Y3 1602 aa29.76■■■□□ 2.35
SHKBP1-221ENST00000599833 UNC13BO14795 1591 aa29.76■■■□□ 2.35
SHKBP1-221ENST00000599833 LMTK2Q8IWU2 1503 aa29.75■■■□□ 2.35
SHKBP1-221ENST00000599833 WASHC2CQ9Y4E1 1318 aa29.74■■■□□ 2.35
SHKBP1-221ENST00000599833 GCC2Q8IWJ2 1684 aa29.73■■■□□ 2.35
SHKBP1-221ENST00000599833 NAIPQ13075 1403 aa29.71■■■□□ 2.35
SHKBP1-221ENST00000599833 MYO3AQ8NEV4 1616 aa29.68■■■□□ 2.34
SHKBP1-221ENST00000599833 HFM1A2PYH4 1435 aa29.67■■■□□ 2.34
SHKBP1-221ENST00000599833 ARHGAP31Q2M1Z3 1444 aa29.67■■■□□ 2.34
SHKBP1-221ENST00000599833 SPATA31D1Q6ZQQ2 1576 aa29.66■■■□□ 2.34
SHKBP1-221ENST00000599833 FBXO31Q5XUX0 539 aaPredicted RBP29.66■■■□□ 2.34
SHKBP1-221ENST00000599833 ZNF142P52746 1687 aaPredicted RBP29.65■■■□□ 2.34
SHKBP1-221ENST00000599833 UHRF1BP1Q6BDS2 1440 aa29.63■■■□□ 2.33
SHKBP1-221ENST00000599833 EFCAB6Q5THR3 1501 aa29.63■■■□□ 2.33
SHKBP1-221ENST00000599833 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.63■■■□□ 2.33
SHKBP1-221ENST00000599833 IQGAP3Q86VI3 1631 aa29.63■■■□□ 2.33
SHKBP1-221ENST00000599833 ERVK-7P63135 1459 aa29.61■■■□□ 2.33
SHKBP1-221ENST00000599833 TET3O43151 1660 aa29.6■■■□□ 2.33
SHKBP1-221ENST00000599833 CFAP65Q6ZU64 1925 aaKnown RBP29.59■■■□□ 2.33
SHKBP1-221ENST00000599833 KANK1Q14678 1352 aa29.59■■■□□ 2.33
SHKBP1-221ENST00000599833 CEP170BQ9Y4F5 1589 aaPredicted RBP29.57■■■□□ 2.32
SHKBP1-221ENST00000599833 HSPA2P54652 639 aa29.57■■■□□ 2.32
SHKBP1-221ENST00000599833 TNRQ92752 1358 aa29.56■■■□□ 2.32
SHKBP1-221ENST00000599833 STRCQ7RTU9 1775 aa29.52■■■□□ 2.32
SHKBP1-221ENST00000599833 E9PCH4 1651 aa29.52■■■□□ 2.32
SHKBP1-221ENST00000599833 A2ML1A8K2U0 1454 aa29.51■■■□□ 2.31
SHKBP1-221ENST00000599833 SYNMO15061 1565 aa29.51■■■□□ 2.31
SHKBP1-221ENST00000599833 NOS1P29475 1434 aa29.5■■■□□ 2.31
SHKBP1-221ENST00000599833 RPRD2Q5VT52 1461 aaKnown RBP29.48■■■□□ 2.31
SHKBP1-221ENST00000599833 NLRP1Q9C000 1473 aa29.48■■■□□ 2.31
SHKBP1-221ENST00000599833 NUP155O75694 1391 aa29.48■■■□□ 2.31
SHKBP1-221ENST00000599833 UBR1Q8IWV7 1749 aa29.41■■■□□ 2.3
SHKBP1-221ENST00000599833 PLA2R1Q13018 1463 aa29.4■■■□□ 2.3
SHKBP1-221ENST00000599833 PIK3C2BO00750 1634 aa29.38■■■□□ 2.29
SHKBP1-221ENST00000599833 UGGT1Q9NYU2 1555 aa29.38■■■□□ 2.29
SHKBP1-221ENST00000599833 SETD5Q9C0A6 1442 aa29.36■■■□□ 2.29
SHKBP1-221ENST00000599833 KDM5AP29375 1690 aaKnown RBP29.34■■■□□ 2.29
SHKBP1-221ENST00000599833 SPHKAPQ2M3C7 1700 aa29.31■■■□□ 2.28
SHKBP1-221ENST00000599833 PTPRTO14522 1441 aa29.31■■■□□ 2.28
SHKBP1-221ENST00000599833 NEURL4Q96JN8 1562 aa29.3■■■□□ 2.28
SHKBP1-221ENST00000599833 IDI1Q13907 227 aa29.3■■■□□ 2.28
SHKBP1-221ENST00000599833 POLR1AO95602 1720 aaPredicted RBP29.28■■■□□ 2.28
SHKBP1-221ENST00000599833 RAB3GAP2Q9H2M9 1393 aa29.28■■■□□ 2.28
SHKBP1-221ENST00000599833 ADGRB3O60242 1522 aa29.27■■■□□ 2.28
SHKBP1-221ENST00000599833 ARHGAP23Q9P227 1491 aa29.27■■■□□ 2.28
SHKBP1-221ENST00000599833 MYO5BQ9ULV0 1848 aa29.26■■■□□ 2.27
SHKBP1-221ENST00000599833 SLIT1O75093 1534 aa29.25■■■□□ 2.27
SHKBP1-221ENST00000599833 NCKAP5LQ9HCH0 1330 aa29.24■■■□□ 2.27
SHKBP1-221ENST00000599833 TMEM131LA2VDJ0 1609 aa29.24■■■□□ 2.27
SHKBP1-221ENST00000599833 SLC52A1Q9NWF4 448 aa29.23■■■□□ 2.27
SHKBP1-221ENST00000599833 TRPM2O94759 1503 aa29.22■■■□□ 2.27
SHKBP1-221ENST00000599833 THEMISQ8N1K5 641 aaPredicted RBP29.22■■■□□ 2.27
SHKBP1-221ENST00000599833 TRIM52Q96A61 297 aa29.22■■■□□ 2.27
SHKBP1-221ENST00000599833 CLTCL1P53675 1640 aa29.2■■■□□ 2.26
SHKBP1-221ENST00000599833 MED14O60244 1454 aa29.19■■■□□ 2.26
SHKBP1-221ENST00000599833 PKD2Q13563 968 aa29.19■■■□□ 2.26
SHKBP1-221ENST00000599833 SLC4A1APQ9BWU0 796 aaKnown RBP29.17■■■□□ 2.26
SHKBP1-221ENST00000599833 TMEM2Q9UHN6 1383 aa29.15■■■□□ 2.26
SHKBP1-221ENST00000599833 HRCP23327 699 aa29.14■■■□□ 2.26
SHKBP1-221ENST00000599833 MPHOSPH9Q99550 1183 aa29.14■■■□□ 2.26
SHKBP1-221ENST00000599833 ZFYVE9O95405 1425 aa29.12■■■□□ 2.25
SHKBP1-221ENST00000599833 LTKP29376 864 aa29.12■■■□□ 2.25
SHKBP1-221ENST00000599833 DMRT2Q9Y5R5 561 aa29.12■■■□□ 2.25
SHKBP1-221ENST00000599833 SCAF11Q99590 1463 aaKnown RBP29.11■■■□□ 2.25
SHKBP1-221ENST00000599833 IQGAP1P46940 1657 aa29.1■■■□□ 2.25
SHKBP1-221ENST00000599833 FOXD1Q16676 465 aa29.1■■■□□ 2.25
SHKBP1-221ENST00000599833 ANKLE2Q86XL3 938 aa29.1■■■□□ 2.25
SHKBP1-221ENST00000599833 ACIN1Q9UKV3 1341 aaKnown RBP29.1■■■□□ 2.25
SHKBP1-221ENST00000599833 NPHP4O75161 1426 aaPredicted RBP29.08■■■□□ 2.25
SHKBP1-221ENST00000599833 LTBP4Q8N2S1 1624 aa29.06■■■□□ 2.24
SHKBP1-221ENST00000599833 KIF1BO60333 1816 aa29.03■■■□□ 2.24
SHKBP1-221ENST00000599833 STAG3Q9UJ98 1225 aa29.02■■■□□ 2.24
SHKBP1-221ENST00000599833 TXNDC2Q86VQ3 553 aa29.01■■■□□ 2.23
SHKBP1-221ENST00000599833 RIMS2Q9UQ26 1411 aa29.01■■■□□ 2.23
SHKBP1-221ENST00000599833 NEXMIFQ5QGS0 1516 aa28.97■■■□□ 2.23
SHKBP1-221ENST00000599833 STRCP1A6NGW2 1772 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms