RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ADGBQ8N7X0 1667 aa22.74■■□□□ 1.23
SHKBP1-218ENST00000598907 NPHP4O75161 1426 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-218ENST00000598907 FBXO31Q5XUX0 539 aaPredicted RBP22.72■■□□□ 1.23
SHKBP1-218ENST00000598907 STRCP1A6NGW2 1772 aa22.71■■□□□ 1.23
SHKBP1-218ENST00000598907 GPATCH8Q9UKJ3 1502 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-218ENST00000598907 ANKLE2Q86XL3 938 aa22.7■■□□□ 1.22
SHKBP1-218ENST00000598907 IQGAP1P46940 1657 aa22.7■■□□□ 1.22
SHKBP1-218ENST00000598907 SYNMO15061 1565 aa22.69■■□□□ 1.22
SHKBP1-218ENST00000598907 LRRC7Q96NW7 1537 aa22.69■■□□□ 1.22
SHKBP1-218ENST00000598907 CASKIN1Q8WXD9 1431 aa22.68■■□□□ 1.22
SHKBP1-218ENST00000598907 DEPDC5O75140 1603 aa22.67■■□□□ 1.22
SHKBP1-218ENST00000598907 PLEKHH2Q8IVE3 1493 aa22.66■■□□□ 1.22
SHKBP1-218ENST00000598907 SETD1AO15047 1707 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-218ENST00000598907 UGGT1Q9NYU2 1555 aa22.66■■□□□ 1.22
SHKBP1-218ENST00000598907 PZPP20742 1482 aa22.66■■□□□ 1.22
SHKBP1-218ENST00000598907 KIAA1107Q9UPP5 1409 aa22.65■■□□□ 1.22
SHKBP1-218ENST00000598907 KDM5DQ9BY66 1539 aa22.64■■□□□ 1.21
SHKBP1-218ENST00000598907 MED14O60244 1454 aa22.64■■□□□ 1.21
SHKBP1-218ENST00000598907 FAM135AQ9P2D6 1515 aa22.63■■□□□ 1.21
SHKBP1-218ENST00000598907 CFDP1Q9UEE9 299 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-218ENST00000598907 POTEAQ6S8J7 498 aa22.62■■□□□ 1.21
SHKBP1-218ENST00000598907 THEMISQ8N1K5 641 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-218ENST00000598907 NLRP1Q9C000 1473 aa22.59■■□□□ 1.21
SHKBP1-218ENST00000598907 CCNB3Q8WWL7 1395 aa22.58■■□□□ 1.21
SHKBP1-218ENST00000598907 FYCO1Q9BQS8 1478 aa22.58■■□□□ 1.2
SHKBP1-218ENST00000598907 KIF3BO15066 747 aa22.56■■□□□ 1.2
SHKBP1-218ENST00000598907 MIA2Q96PC5 1412 aa22.56■■□□□ 1.2
SHKBP1-218ENST00000598907 ZNF644Q9H582 1327 aaPredicted RBP22.54■■□□□ 1.2
SHKBP1-218ENST00000598907 WASHC2CQ9Y4E1 1318 aa22.54■■□□□ 1.2
SHKBP1-218ENST00000598907 DHX29Q7Z478 1369 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-218ENST00000598907 ZC3H13Q5T200 1668 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-218ENST00000598907 XIRP1Q702N8 1843 aaKnown RBP22.5■■□□□ 1.19
SHKBP1-218ENST00000598907 MBD5Q9P267 1494 aa22.48■■□□□ 1.19
SHKBP1-218ENST00000598907 TIAM1Q13009 1591 aa22.48■■□□□ 1.19
SHKBP1-218ENST00000598907 RTEL1-TNFRSF6BF6WH68 1400 aa22.48■■□□□ 1.19
SHKBP1-218ENST00000598907 MTUS2Q5JR59 1369 aa22.44■■□□□ 1.18
SHKBP1-218ENST00000598907 ROBO1Q9Y6N7 1651 aa22.43■■□□□ 1.18
SHKBP1-218ENST00000598907 SCAF11Q99590 1463 aaKnown RBP22.42■■□□□ 1.18
SHKBP1-218ENST00000598907 UBR1Q8IWV7 1749 aa22.41■■□□□ 1.18
SHKBP1-218ENST00000598907 FAM135BQ49AJ0 1406 aa22.4■■□□□ 1.18
SHKBP1-218ENST00000598907 CCDC141Q6ZP82 1450 aa22.4■■□□□ 1.18
SHKBP1-218ENST00000598907 ERVK-7P63135 1459 aa22.39■■□□□ 1.17
SHKBP1-218ENST00000598907 ABCC3O15438 1527 aa22.37■■□□□ 1.17
SHKBP1-218ENST00000598907 TMEM94Q12767 1356 aa22.34■■□□□ 1.17
SHKBP1-218ENST00000598907 CAMSAP2Q08AD1 1489 aa22.34■■□□□ 1.17
SHKBP1-218ENST00000598907 EHBP1L1Q8N3D4 1523 aa22.33■■□□□ 1.17
SHKBP1-218ENST00000598907 NCOA2Q15596 1464 aa22.33■■□□□ 1.16
SHKBP1-218ENST00000598907 LTKP29376 864 aa22.32■■□□□ 1.16
SHKBP1-218ENST00000598907 TXNDC2Q86VQ3 553 aa22.32■■□□□ 1.16
SHKBP1-218ENST00000598907 PHLPP1O60346 1717 aa22.31■■□□□ 1.16
SHKBP1-218ENST00000598907 CEP152O94986 1710 aa22.31■■□□□ 1.16
SHKBP1-218ENST00000598907 UPF1Q92900 1129 aaKnown RBP eCLIP22.31■■□□□ 1.16
SHKBP1-218ENST00000598907 TRIM52Q96A61 297 aa22.3■■□□□ 1.16
SHKBP1-218ENST00000598907 RBM33Q96EV2 1170 aaKnown RBP22.3■■□□□ 1.16
SHKBP1-218ENST00000598907 MAP3K1Q13233 1512 aa22.3■■□□□ 1.16
SHKBP1-218ENST00000598907 CFAP65Q6ZU64 1925 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-218ENST00000598907 ARHGAP23Q9P227 1491 aa22.29■■□□□ 1.16
SHKBP1-218ENST00000598907 SLIT1O75093 1534 aa22.29■■□□□ 1.16
SHKBP1-218ENST00000598907 LRRC9Q6ZRR7 1453 aa22.28■■□□□ 1.16
SHKBP1-218ENST00000598907 JCADQ9P266 1359 aa22.25■■□□□ 1.15
SHKBP1-218ENST00000598907 MROH1Q8NDA8 1641 aa22.24■■□□□ 1.15
SHKBP1-218ENST00000598907 EID1Q9Y6B2 187 aa22.24■■□□□ 1.15
SHKBP1-218ENST00000598907 CEP162Q5TB80 1403 aa22.23■■□□□ 1.15
SHKBP1-218ENST00000598907 LRP6O75581 1613 aa22.23■■□□□ 1.15
SHKBP1-218ENST00000598907 MEX3CQ5U5Q3 659 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-218ENST00000598907 PROSER2Q86WR7 435 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-218ENST00000598907 ARHGEF5Q12774 1597 aa22.21■■□□□ 1.15
SHKBP1-218ENST00000598907 PIK3C2BO00750 1634 aa22.21■■□□□ 1.15
SHKBP1-218ENST00000598907 EIF2AK4Q9P2K8 1649 aaKnown RBP22.21■■□□□ 1.15
SHKBP1-218ENST00000598907 COL16A1Q07092 1604 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-218ENST00000598907 PRDM15P57071 1507 aaPredicted RBP22.17■■□□□ 1.14
SHKBP1-218ENST00000598907 TSPY4P0CV99 314 aa22.17■■□□□ 1.14
SHKBP1-218ENST00000598907 TSPY10P0CW01 314 aa22.17■■□□□ 1.14
SHKBP1-218ENST00000598907 MSH6P52701 1360 aa22.16■■□□□ 1.14
SHKBP1-218ENST00000598907 TMEM2Q9UHN6 1383 aa22.16■■□□□ 1.14
SHKBP1-218ENST00000598907 KCNA6P17658 529 aa22.16■■□□□ 1.14
SHKBP1-218ENST00000598907 RSPH4AQ5TD94 716 aa22.16■■□□□ 1.14
SHKBP1-218ENST00000598907 SLC26A8Q96RN1 970 aa22.16■■□□□ 1.14
SHKBP1-218ENST00000598907 ZNF772Q68DY9 489 aaPredicted RBP22.15■■□□□ 1.14
SHKBP1-218ENST00000598907 NKTRP30414 1462 aaKnown RBP22.15■■□□□ 1.14
SHKBP1-218ENST00000598907 NWD1Q149M9 1564 aa22.14■■□□□ 1.13
SHKBP1-218ENST00000598907 STAG3Q9UJ98 1225 aa22.14■■□□□ 1.13
SHKBP1-218ENST00000598907 SLAIN2Q9P270 581 aa22.13■■□□□ 1.13
SHKBP1-218ENST00000598907 MAST1Q9Y2H9 1570 aa22.12■■□□□ 1.13
SHKBP1-218ENST00000598907 EFCAB6Q5THR3 1501 aa22.11■■□□□ 1.13
SHKBP1-218ENST00000598907 SPATA31A6Q5VVP1 1343 aa22.09■■□□□ 1.13
SHKBP1-218ENST00000598907 TET3O43151 1660 aa22.09■■□□□ 1.13
SHKBP1-218ENST00000598907 RXRBP28702 533 aa22.08■■□□□ 1.13
SHKBP1-218ENST00000598907 KDM5AP29375 1690 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-218ENST00000598907 BCANQ96GW7 911 aa22.07■■□□□ 1.12
SHKBP1-218ENST00000598907 SHPRHQ149N8 1683 aa22.07■■□□□ 1.12
SHKBP1-218ENST00000598907 FGD6Q6ZV73 1430 aa22.06■■□□□ 1.12
SHKBP1-218ENST00000598907 LOC105371045A0A1W2PR82 267 aa22.06■■□□□ 1.12
SHKBP1-218ENST00000598907 ARHGAP31Q2M1Z3 1444 aa22.06■■□□□ 1.12
SHKBP1-218ENST00000598907 SRCAPQ6ZRS2 3230 aa22.04■■□□□ 1.12
SHKBP1-218ENST00000598907 CDK12Q9NYV4 1490 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-218ENST00000598907 DUOX2Q9NRD8 1548 aa22.03■■□□□ 1.12
SHKBP1-218ENST00000598907 NUTM2BA6NNL0 878 aaPredicted RBP22.02■■□□□ 1.12
SHKBP1-218ENST00000598907 NUTM2EB1AL46 878 aaPredicted RBP22.02■■□□□ 1.12
SHKBP1-218ENST00000598907 NUTM2AQ8IVF1 878 aaPredicted RBP22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 1113.5 ms