RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ZMYM3Q14202 1370 aa21.64■■□□□ 1.06
SHKBP1-217ENST00000598558 ESF1Q9H501 851 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-217ENST00000598558 ERBINQ96RT1 1412 aa21.63■■□□□ 1.05
SHKBP1-217ENST00000598558 MROH1Q8NDA8 1641 aa21.61■■□□□ 1.05
SHKBP1-217ENST00000598558 CNTLNQ9NXG0 1405 aa21.61■■□□□ 1.05
SHKBP1-217ENST00000598558 WASHC2CQ9Y4E1 1318 aa21.6■■□□□ 1.05
SHKBP1-217ENST00000598558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.6■■□□□ 1.05
SHKBP1-217ENST00000598558 ANKRD50Q9ULJ7 1429 aa21.6■■□□□ 1.05
SHKBP1-217ENST00000598558 RNF17Q9BXT8 1623 aaKnown RBP21.58■■□□□ 1.05
SHKBP1-217ENST00000598558 EIF2AK4Q9P2K8 1649 aaKnown RBP21.58■■□□□ 1.05
SHKBP1-217ENST00000598558 CLTCQ00610 1675 aaKnown RBP21.56■■□□□ 1.04
SHKBP1-217ENST00000598558 FBXO31Q5XUX0 539 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-217ENST00000598558 C3P01024 1663 aa21.54■■□□□ 1.04
SHKBP1-217ENST00000598558 ABCC3O15438 1527 aa21.54■■□□□ 1.04
SHKBP1-217ENST00000598558 KDM5DQ9BY66 1539 aa21.54■■□□□ 1.04
SHKBP1-217ENST00000598558 NAIPQ13075 1403 aa21.53■■□□□ 1.04
SHKBP1-217ENST00000598558 PRDM15P57071 1507 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-217ENST00000598558 DEPDC5O75140 1603 aa21.5■■□□□ 1.03
SHKBP1-217ENST00000598558 MROH2AA6NES4 1674 aa21.5■■□□□ 1.03
SHKBP1-217ENST00000598558 VWDEQ8N2E2 1590 aa21.48■■□□□ 1.03
SHKBP1-217ENST00000598558 FAM135AQ9P2D6 1515 aa21.48■■□□□ 1.03
SHKBP1-217ENST00000598558 LMTK3Q96Q04 1460 aa21.47■■□□□ 1.03
SHKBP1-217ENST00000598558 HSPA2P54652 639 aa21.47■■□□□ 1.03
SHKBP1-217ENST00000598558 HFM1A2PYH4 1435 aa21.46■■□□□ 1.03
SHKBP1-217ENST00000598558 NPATQ14207 1427 aa21.46■■□□□ 1.03
SHKBP1-217ENST00000598558 PZPP20742 1482 aa21.45■■□□□ 1.03
SHKBP1-217ENST00000598558 KANK1Q14678 1352 aa21.45■■□□□ 1.02
SHKBP1-217ENST00000598558 LMTK2Q8IWU2 1503 aa21.43■■□□□ 1.02
SHKBP1-217ENST00000598558 CEP152O94986 1710 aa21.43■■□□□ 1.02
SHKBP1-217ENST00000598558 NUP155O75694 1391 aa21.42■■□□□ 1.02
SHKBP1-217ENST00000598558 ARHGAP31Q2M1Z3 1444 aa21.41■■□□□ 1.02
SHKBP1-217ENST00000598558 UNC13BO14795 1591 aa21.4■■□□□ 1.02
SHKBP1-217ENST00000598558 TNRQ92752 1358 aa21.4■■□□□ 1.02
SHKBP1-217ENST00000598558 ZC3H13Q5T200 1668 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-217ENST00000598558 UHRF1BP1Q6BDS2 1440 aa21.39■■□□□ 1.02
SHKBP1-217ENST00000598558 CAMSAP1Q5T5Y3 1602 aa21.39■■□□□ 1.01
SHKBP1-217ENST00000598558 ERVK-7P63135 1459 aa21.38■■□□□ 1.01
SHKBP1-217ENST00000598558 GCC2Q8IWJ2 1684 aa21.36■■□□□ 1.01
SHKBP1-217ENST00000598558 SPATA31D1Q6ZQQ2 1576 aa21.35■■□□□ 1.01
SHKBP1-217ENST00000598558 PREX1Q8TCU6 1659 aa21.34■■□□□ 1.01
SHKBP1-217ENST00000598558 EFCAB6Q5THR3 1501 aa21.34■■□□□ 1.01
SHKBP1-217ENST00000598558 TRIM52Q96A61 297 aa21.33■■□□□ 1.01
SHKBP1-217ENST00000598558 SETD1BQ9UPS6 1966 aaKnown RBP21.32■■□□□ 1
SHKBP1-217ENST00000598558 SETD5Q9C0A6 1442 aa21.32■■□□□ 1
SHKBP1-217ENST00000598558 IQGAP3Q86VI3 1631 aa21.31■■□□□ 1
SHKBP1-217ENST00000598558 NOS1P29475 1434 aa21.3■■□□□ 1
SHKBP1-217ENST00000598558 MYO3AQ8NEV4 1616 aa21.3■■□□□ 1
SHKBP1-217ENST00000598558 A2ML1A8K2U0 1454 aa21.29■■□□□ 1
SHKBP1-217ENST00000598558 IDI1Q13907 227 aa21.29■■□□□ 1
SHKBP1-217ENST00000598558 TET3O43151 1660 aa21.28■■□□□ 1
SHKBP1-217ENST00000598558 CEP170BQ9Y4F5 1589 aaPredicted RBP21.27■■□□□ 1
SHKBP1-217ENST00000598558 RAB3GAP2Q9H2M9 1393 aa21.27■■□□□ 1
SHKBP1-217ENST00000598558 NLRP1Q9C000 1473 aa21.26■□□□□ 0.99
SHKBP1-217ENST00000598558 SYNMO15061 1565 aa21.25■□□□□ 0.99
SHKBP1-217ENST00000598558 CFAP65Q6ZU64 1925 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-217ENST00000598558 RPRD2Q5VT52 1461 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-217ENST00000598558 PKD2Q13563 968 aa21.24■□□□□ 0.99
SHKBP1-217ENST00000598558 E9PCH4 1651 aa21.24■□□□□ 0.99
SHKBP1-217ENST00000598558 NCKAP5LQ9HCH0 1330 aa21.24■□□□□ 0.99
SHKBP1-217ENST00000598558 SLC4A1APQ9BWU0 796 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-217ENST00000598558 ZNF142P52746 1687 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-217ENST00000598558 FOXD1Q16676 465 aa21.22■□□□□ 0.99
SHKBP1-217ENST00000598558 MPHOSPH9Q99550 1183 aa21.21■□□□□ 0.99
SHKBP1-217ENST00000598558 THEMISQ8N1K5 641 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-217ENST00000598558 PLA2R1Q13018 1463 aa21.2■□□□□ 0.98
SHKBP1-217ENST00000598558 UGGT1Q9NYU2 1555 aa21.19■□□□□ 0.98
SHKBP1-217ENST00000598558 SLC52A1Q9NWF4 448 aa21.19■□□□□ 0.98
SHKBP1-217ENST00000598558 PTPRTO14522 1441 aa21.19■□□□□ 0.98
SHKBP1-217ENST00000598558 STRCQ7RTU9 1775 aa21.18■□□□□ 0.98
SHKBP1-217ENST00000598558 HRCP23327 699 aa21.16■□□□□ 0.98
SHKBP1-217ENST00000598558 TRIM26Q12899 539 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-217ENST00000598558 PIK3C2BO00750 1634 aa21.15■□□□□ 0.98
SHKBP1-217ENST00000598558 LTKP29376 864 aa21.14■□□□□ 0.97
SHKBP1-217ENST00000598558 STAG3Q9UJ98 1225 aa21.12■□□□□ 0.97
SHKBP1-217ENST00000598558 UBR1Q8IWV7 1749 aa21.12■□□□□ 0.97
SHKBP1-217ENST00000598558 ANKLE2Q86XL3 938 aa21.11■□□□□ 0.97
SHKBP1-217ENST00000598558 ARHGAP23Q9P227 1491 aa21.1■□□□□ 0.97
SHKBP1-217ENST00000598558 CHGAP10645 457 aaKnown RBP21.1■□□□□ 0.97
SHKBP1-217ENST00000598558 TMEM2Q9UHN6 1383 aa21.1■□□□□ 0.97
SHKBP1-217ENST00000598558 TXNDC2Q86VQ3 553 aa21.08■□□□□ 0.97
SHKBP1-217ENST00000598558 ADGRB3O60242 1522 aa21.08■□□□□ 0.96
SHKBP1-217ENST00000598558 ACIN1Q9UKV3 1341 aaKnown RBP21.07■□□□□ 0.96
SHKBP1-217ENST00000598558 DMRT2Q9Y5R5 561 aa21.07■□□□□ 0.96
SHKBP1-217ENST00000598558 SLIT1O75093 1534 aa21.07■□□□□ 0.96
SHKBP1-217ENST00000598558 NEURL4Q96JN8 1562 aa21.06■□□□□ 0.96
SHKBP1-217ENST00000598558 TRPM2O94759 1503 aa21.06■□□□□ 0.96
SHKBP1-217ENST00000598558 TMEM131LA2VDJ0 1609 aa21.05■□□□□ 0.96
SHKBP1-217ENST00000598558 SPHKAPQ2M3C7 1700 aa21.04■□□□□ 0.96
SHKBP1-217ENST00000598558 CLTCL1P53675 1640 aa21.04■□□□□ 0.96
SHKBP1-217ENST00000598558 MED14O60244 1454 aa21.02■□□□□ 0.96
SHKBP1-217ENST00000598558 NUTM2DQ5VT03 806 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-217ENST00000598558 NPHP4O75161 1426 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-217ENST00000598558 ZFYVE9O95405 1425 aa21.02■□□□□ 0.96
SHKBP1-217ENST00000598558 SCAF11Q99590 1463 aaKnown RBP21.01■□□□□ 0.95
SHKBP1-217ENST00000598558 SENP3Q9H4L4 574 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-217ENST00000598558 KDM5AP29375 1690 aaKnown RBP21.01■□□□□ 0.95
SHKBP1-217ENST00000598558 RIMS2Q9UQ26 1411 aa21.01■□□□□ 0.95
SHKBP1-217ENST00000598558 EID1Q9Y6B2 187 aa21■□□□□ 0.95
SHKBP1-217ENST00000598558 ANKRD30BQ9BXX2 1392 aa20.98■□□□□ 0.95
SHKBP1-217ENST00000598558 ZNF335Q9H4Z2 1342 aaPredicted RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms