RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 RRP7BPQ9NSQ0 103 aa21.28■■□□□ 1
UPF1-205ENST00000598209 PREX1Q8TCU6 1659 aa21.27■■□□□ 1
UPF1-205ENST00000598209 ADGRL2O95490 1459 aa21.26■□□□□ 0.99
UPF1-205ENST00000598209 LMTK3Q96Q04 1460 aa21.26■□□□□ 0.99
UPF1-205ENST00000598209 ZMYM3Q14202 1370 aa21.25■□□□□ 0.99
UPF1-205ENST00000598209 FAM135AQ9P2D6 1515 aa21.25■□□□□ 0.99
UPF1-205ENST00000598209 NCOA1Q15788 1441 aa21.25■□□□□ 0.99
UPF1-205ENST00000598209 ERBINQ96RT1 1412 aa21.24■□□□□ 0.99
UPF1-205ENST00000598209 KDM5DQ9BY66 1539 aa21.24■□□□□ 0.99
UPF1-205ENST00000598209 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.23■□□□□ 0.99
UPF1-205ENST00000598209 MROH1Q8NDA8 1641 aa21.22■□□□□ 0.99
UPF1-205ENST00000598209 PTPRKQ15262 1439 aa21.22■□□□□ 0.99
UPF1-205ENST00000598209 RRBP1Q9P2E9 1410 aaKnown RBP21.21■□□□□ 0.99
UPF1-205ENST00000598209 ZC3H13Q5T200 1668 aaKnown RBP21.2■□□□□ 0.98
UPF1-205ENST00000598209 WASHC2CQ9Y4E1 1318 aa21.2■□□□□ 0.98
UPF1-205ENST00000598209 NPATQ14207 1427 aa21.19■□□□□ 0.98
UPF1-205ENST00000598209 CEP152O94986 1710 aa21.18■□□□□ 0.98
UPF1-205ENST00000598209 DEPDC5O75140 1603 aa21.18■□□□□ 0.98
UPF1-205ENST00000598209 ITGAEP38570 1179 aa21.17■□□□□ 0.98
UPF1-205ENST00000598209 UHRF1BP1Q6BDS2 1440 aa21.17■□□□□ 0.98
UPF1-205ENST00000598209 ABCC3O15438 1527 aa21.17■□□□□ 0.98
UPF1-205ENST00000598209 PRDM15P57071 1507 aaPredicted RBP21.16■□□□□ 0.98
UPF1-205ENST00000598209 ROCK1Q13464 1354 aa21.14■□□□□ 0.98
UPF1-205ENST00000598209 HSPA2P54652 639 aa21.14■□□□□ 0.97
UPF1-205ENST00000598209 PZPP20742 1482 aa21.13■□□□□ 0.97
UPF1-205ENST00000598209 CAMSAP1Q5T5Y3 1602 aa21.13■□□□□ 0.97
UPF1-205ENST00000598209 ANKRD50Q9ULJ7 1429 aa21.12■□□□□ 0.97
UPF1-205ENST00000598209 MYO3AQ8NEV4 1616 aa21.11■□□□□ 0.97
UPF1-205ENST00000598209 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.11■□□□□ 0.974e-7■■■□□ 15.6
UPF1-205ENST00000598209 CFAP65Q6ZU64 1925 aaKnown RBP21.11■□□□□ 0.97
UPF1-205ENST00000598209 KANK1Q14678 1352 aa21.09■□□□□ 0.97
UPF1-205ENST00000598209 ZNF142P52746 1687 aaPredicted RBP21.09■□□□□ 0.97
UPF1-205ENST00000598209 FBXO31Q5XUX0 539 aaPredicted RBP21.08■□□□□ 0.97
UPF1-205ENST00000598209 VWDEQ8N2E2 1590 aa21.07■□□□□ 0.96
UPF1-205ENST00000598209 TNRQ92752 1358 aa21.06■□□□□ 0.96
UPF1-205ENST00000598209 CEP170BQ9Y4F5 1589 aaPredicted RBP21.05■□□□□ 0.96
UPF1-205ENST00000598209 UNC13BO14795 1591 aa21.04■□□□□ 0.96
UPF1-205ENST00000598209 LMTK2Q8IWU2 1503 aa21.04■□□□□ 0.96
UPF1-205ENST00000598209 SPATA31D1Q6ZQQ2 1576 aa21.03■□□□□ 0.96
UPF1-205ENST00000598209 STRCQ7RTU9 1775 aa21.02■□□□□ 0.96
UPF1-205ENST00000598209 ERVK-7P63135 1459 aa21.02■□□□□ 0.96
UPF1-205ENST00000598209 ARHGAP31Q2M1Z3 1444 aa21.02■□□□□ 0.96
UPF1-205ENST00000598209 A2ML1A8K2U0 1454 aa21.01■□□□□ 0.95
UPF1-205ENST00000598209 GCC2Q8IWJ2 1684 aa21■□□□□ 0.95
UPF1-205ENST00000598209 EFCAB6Q5THR3 1501 aa20.99■□□□□ 0.95
UPF1-205ENST00000598209 TET3O43151 1660 aa20.98■□□□□ 0.95
UPF1-205ENST00000598209 NLRP1Q9C000 1473 aa20.97■□□□□ 0.95
UPF1-205ENST00000598209 IQGAP3Q86VI3 1631 aa20.96■□□□□ 0.95
UPF1-205ENST00000598209 NAIPQ13075 1403 aa20.95■□□□□ 0.95
UPF1-205ENST00000598209 HFM1A2PYH4 1435 aa20.92■□□□□ 0.94
UPF1-205ENST00000598209 PLA2R1Q13018 1463 aa20.92■□□□□ 0.94
UPF1-205ENST00000598209 UGGT1Q9NYU2 1555 aa20.92■□□□□ 0.94
UPF1-205ENST00000598209 NUP155O75694 1391 aa20.91■□□□□ 0.94
UPF1-205ENST00000598209 RPRD2Q5VT52 1461 aaKnown RBP20.9■□□□□ 0.94
UPF1-205ENST00000598209 E9PCH4 1651 aa20.89■□□□□ 0.94
UPF1-205ENST00000598209 DMRT2Q9Y5R5 561 aa20.89■□□□□ 0.93
UPF1-205ENST00000598209 UBR1Q8IWV7 1749 aa20.89■□□□□ 0.93
UPF1-205ENST00000598209 SYNMO15061 1565 aa20.89■□□□□ 0.93
UPF1-205ENST00000598209 NOS1P29475 1434 aa20.88■□□□□ 0.93
UPF1-205ENST00000598209 POLR1AO95602 1720 aaPredicted RBP20.88■□□□□ 0.93
UPF1-205ENST00000598209 PIK3C2BO00750 1634 aa20.86■□□□□ 0.93
UPF1-205ENST00000598209 NCKAP5LQ9HCH0 1330 aa20.86■□□□□ 0.93
UPF1-205ENST00000598209 THEMISQ8N1K5 641 aaPredicted RBP20.86■□□□□ 0.93
UPF1-205ENST00000598209 PTPRTO14522 1441 aa20.86■□□□□ 0.93
UPF1-205ENST00000598209 PKD2Q13563 968 aa20.85■□□□□ 0.93
UPF1-205ENST00000598209 KDM5AP29375 1690 aaKnown RBP20.82■□□□□ 0.92
UPF1-205ENST00000598209 NEURL4Q96JN8 1562 aa20.8■□□□□ 0.92
UPF1-205ENST00000598209 IDI1Q13907 227 aa20.8■□□□□ 0.92
UPF1-205ENST00000598209 ANKLE2Q86XL3 938 aa20.78■□□□□ 0.92
UPF1-205ENST00000598209 TRIM52Q96A61 297 aa20.78■□□□□ 0.92
UPF1-205ENST00000598209 SLC52A1Q9NWF4 448 aa20.78■□□□□ 0.92
UPF1-205ENST00000598209 MYO5BQ9ULV0 1848 aa20.78■□□□□ 0.92
UPF1-205ENST00000598209 SPHKAPQ2M3C7 1700 aa20.78■□□□□ 0.92
UPF1-205ENST00000598209 STAG3Q9UJ98 1225 aa20.77■□□□□ 0.92
UPF1-205ENST00000598209 ADGRB3O60242 1522 aa20.77■□□□□ 0.92
UPF1-205ENST00000598209 SLIT1O75093 1534 aa20.76■□□□□ 0.91
UPF1-205ENST00000598209 ARHGAP23Q9P227 1491 aa20.75■□□□□ 0.91
UPF1-205ENST00000598209 IQGAP1P46940 1657 aa20.73■□□□□ 0.91
UPF1-205ENST00000598209 SETD5Q9C0A6 1442 aa20.73■□□□□ 0.91
UPF1-205ENST00000598209 MED14O60244 1454 aa20.73■□□□□ 0.91
UPF1-205ENST00000598209 NPHP4O75161 1426 aaPredicted RBP20.72■□□□□ 0.91
UPF1-205ENST00000598209 TMEM131LA2VDJ0 1609 aa20.72■□□□□ 0.91
UPF1-205ENST00000598209 SCAF11Q99590 1463 aaKnown RBP20.72■□□□□ 0.91
UPF1-205ENST00000598209 TMEM2Q9UHN6 1383 aa20.72■□□□□ 0.91
UPF1-205ENST00000598209 TXNDC2Q86VQ3 553 aa20.69■□□□□ 0.9
UPF1-205ENST00000598209 SLC4A1APQ9BWU0 796 aaKnown RBP20.69■□□□□ 0.9
UPF1-205ENST00000598209 LTBP4Q8N2S1 1624 aa20.68■□□□□ 0.9
UPF1-205ENST00000598209 LTKP29376 864 aa20.68■□□□□ 0.9
UPF1-205ENST00000598209 EID1Q9Y6B2 187 aa20.68■□□□□ 0.9
UPF1-205ENST00000598209 TRPM2O94759 1503 aa20.67■□□□□ 0.9
UPF1-205ENST00000598209 CHGAP10645 457 aaKnown RBP20.66■□□□□ 0.9
UPF1-205ENST00000598209 ZNF335Q9H4Z2 1342 aaPredicted RBP20.66■□□□□ 0.9
UPF1-205ENST00000598209 RAB3GAP2Q9H2M9 1393 aa20.66■□□□□ 0.9
UPF1-205ENST00000598209 CLTCL1P53675 1640 aa20.65■□□□□ 0.9
UPF1-205ENST00000598209 CERKQ8TCT0 537 aa20.65■□□□□ 0.9
UPF1-205ENST00000598209 ACIN1Q9UKV3 1341 aaKnown RBP20.64■□□□□ 0.89
UPF1-205ENST00000598209 KIF1BO60333 1816 aa20.63■□□□□ 0.89
UPF1-205ENST00000598209 ZFYVE9O95405 1425 aa20.62■□□□□ 0.89
UPF1-205ENST00000598209 RIMS2Q9UQ26 1411 aa20.61■□□□□ 0.89
UPF1-205ENST00000598209 MPHOSPH9Q99550 1183 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms