RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 PPP6R1Q9UPN7 881 aa21.63■■□□□ 1.05
VRK3-213ENST00000597215 NAIPQ13075 1403 aa21.63■■□□□ 1.05
VRK3-213ENST00000597215 DEPDC5O75140 1603 aa21.62■■□□□ 1.05
VRK3-213ENST00000597215 FAM135AQ9P2D6 1515 aa21.62■■□□□ 1.05
VRK3-213ENST00000597215 RIMS1Q86UR5 1692 aaKnown RBP21.62■■□□□ 1.05
VRK3-213ENST00000597215 ESF1Q9H501 851 aaKnown RBP21.61■■□□□ 1.05
VRK3-213ENST00000597215 MROH1Q8NDA8 1641 aa21.61■■□□□ 1.05
VRK3-213ENST00000597215 PRDM15P57071 1507 aaPredicted RBP21.6■■□□□ 1.05
VRK3-213ENST00000597215 CNTLNQ9NXG0 1405 aa21.6■■□□□ 1.05
VRK3-213ENST00000597215 KDM5DQ9BY66 1539 aa21.59■■□□□ 1.05
VRK3-213ENST00000597215 CLTCQ00610 1675 aaKnown RBP21.57■■□□□ 1.04
VRK3-213ENST00000597215 UNC13BO14795 1591 aa21.57■■□□□ 1.04
VRK3-213ENST00000597215 MROH2AA6NES4 1674 aa21.56■■□□□ 1.04
VRK3-213ENST00000597215 ZC3H13Q5T200 1668 aaKnown RBP21.56■■□□□ 1.04
VRK3-213ENST00000597215 KANK1Q14678 1352 aa21.55■■□□□ 1.04
VRK3-213ENST00000597215 PTPRMP28827 1452 aa21.55■■□□□ 1.04
VRK3-213ENST00000597215 WASHC2CQ9Y4E1 1318 aa21.55■■□□□ 1.04
VRK3-213ENST00000597215 AEBP2Q6ZN18 517 aaPredicted RBP21.54■■□□□ 1.04
VRK3-213ENST00000597215 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.54■■□□□ 1.04
VRK3-213ENST00000597215 ABCC3O15438 1527 aa21.54■■□□□ 1.04
VRK3-213ENST00000597215 TRIM26Q12899 539 aaPredicted RBP21.53■■□□□ 1.04
VRK3-213ENST00000597215 VWDEQ8N2E2 1590 aa21.53■■□□□ 1.04
VRK3-213ENST00000597215 CEP152O94986 1710 aa21.52■■□□□ 1.04
VRK3-213ENST00000597215 C3P01024 1663 aa21.5■■□□□ 1.03
VRK3-213ENST00000597215 SETD5Q9C0A6 1442 aa21.5■■□□□ 1.03
VRK3-213ENST00000597215 ZMYM3Q14202 1370 aa21.48■■□□□ 1.03
VRK3-213ENST00000597215 CAMSAP1Q5T5Y3 1602 aa21.48■■□□□ 1.03
VRK3-213ENST00000597215 LMTK2Q8IWU2 1503 aa21.48■■□□□ 1.03
VRK3-213ENST00000597215 IQGAP3Q86VI3 1631 aa21.47■■□□□ 1.03
VRK3-213ENST00000597215 NUP155O75694 1391 aa21.46■■□□□ 1.03
VRK3-213ENST00000597215 PLPPR3Q6T4P5 718 aa21.44■■□□□ 1.02
VRK3-213ENST00000597215 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
VRK3-213ENST00000597215 PZPP20742 1482 aa21.44■■□□□ 1.02
VRK3-213ENST00000597215 TET3O43151 1660 aa21.44■■□□□ 1.02
VRK3-213ENST00000597215 CEBPAP49715 358 aaPredicted RBP21.43■■□□□ 1.02
VRK3-213ENST00000597215 RAB3GAP2Q9H2M9 1393 aa21.43■■□□□ 1.02
VRK3-213ENST00000597215 EFCAB6Q5THR3 1501 aa21.42■■□□□ 1.02
VRK3-213ENST00000597215 ARHGAP31Q2M1Z3 1444 aa21.41■■□□□ 1.02
VRK3-213ENST00000597215 TRIM52Q96A61 297 aa21.41■■□□□ 1.02
VRK3-213ENST00000597215 NPATQ14207 1427 aa21.4■■□□□ 1.02
VRK3-213ENST00000597215 SETD1BQ9UPS6 1966 aaKnown RBP21.37■■□□□ 1.01
VRK3-213ENST00000597215 RPRD2Q5VT52 1461 aaKnown RBP21.37■■□□□ 1.01
VRK3-213ENST00000597215 HRCP23327 699 aa21.36■■□□□ 1.01
VRK3-213ENST00000597215 PREX1Q8TCU6 1659 aa21.35■■□□□ 1.01
VRK3-213ENST00000597215 ERVK-7P63135 1459 aa21.35■■□□□ 1.01
VRK3-213ENST00000597215 SPATA31D1Q6ZQQ2 1576 aa21.35■■□□□ 1.01
VRK3-213ENST00000597215 CFAP65Q6ZU64 1925 aaKnown RBP21.35■■□□□ 1.01
VRK3-213ENST00000597215 E9PCH4 1651 aa21.34■■□□□ 1.01
VRK3-213ENST00000597215 FBXO31Q5XUX0 539 aaPredicted RBP21.33■■□□□ 1.01
VRK3-213ENST00000597215 SLC4A1APQ9BWU0 796 aaKnown RBP21.32■■□□□ 1
VRK3-213ENST00000597215 TNRQ92752 1358 aa21.32■■□□□ 1
VRK3-213ENST00000597215 UHRF1BP1Q6BDS2 1440 aa21.29■■□□□ 1
VRK3-213ENST00000597215 MYO3AQ8NEV4 1616 aa21.29■■□□□ 1
VRK3-213ENST00000597215 NOS1P29475 1434 aa21.28■■□□□ 1
VRK3-213ENST00000597215 PKD2Q13563 968 aa21.27■■□□□ 1
VRK3-213ENST00000597215 MPHOSPH9Q99550 1183 aa21.27■■□□□ 1
VRK3-213ENST00000597215 NLRP1Q9C000 1473 aa21.26■□□□□ 0.99
VRK3-213ENST00000597215 ZNF142P52746 1687 aaPredicted RBP21.25■□□□□ 0.99
VRK3-213ENST00000597215 SYNMO15061 1565 aa21.25■□□□□ 0.99
VRK3-213ENST00000597215 SPHKAPQ2M3C7 1700 aa21.25■□□□□ 0.99
VRK3-213ENST00000597215 PCGF6Q9BYE7 350 aa21.24■□□□□ 0.99
VRK3-213ENST00000597215 LMTK3Q96Q04 1460 aa21.24■□□□□ 0.99
VRK3-213ENST00000597215 CEP170BQ9Y4F5 1589 aaPredicted RBP21.23■□□□□ 0.99
VRK3-213ENST00000597215 A2ML1A8K2U0 1454 aa21.22■□□□□ 0.99
VRK3-213ENST00000597215 PTPRTO14522 1441 aa21.21■□□□□ 0.99
VRK3-213ENST00000597215 SLC52A1Q9NWF4 448 aa21.19■□□□□ 0.98
VRK3-213ENST00000597215 TRPM2O94759 1503 aa21.19■□□□□ 0.98
VRK3-213ENST00000597215 PIK3C2BO00750 1634 aa21.18■□□□□ 0.98
VRK3-213ENST00000597215 UGGT1Q9NYU2 1555 aa21.16■□□□□ 0.98
VRK3-213ENST00000597215 FOXD1Q16676 465 aa21.16■□□□□ 0.98
VRK3-213ENST00000597215 IDI1Q13907 227 aa21.15■□□□□ 0.98
VRK3-213ENST00000597215 KDM5AP29375 1690 aaKnown RBP21.15■□□□□ 0.98
VRK3-213ENST00000597215 PLA2R1Q13018 1463 aa21.14■□□□□ 0.98
VRK3-213ENST00000597215 UBR1Q8IWV7 1749 aa21.14■□□□□ 0.97
VRK3-213ENST00000597215 ADGRB3O60242 1522 aa21.14■□□□□ 0.97
VRK3-213ENST00000597215 CLTCL1P53675 1640 aa21.12■□□□□ 0.97
VRK3-213ENST00000597215 HSPA2P54652 639 aa21.11■□□□□ 0.97
VRK3-213ENST00000597215 STAG3Q9UJ98 1225 aa21.11■□□□□ 0.97
VRK3-213ENST00000597215 THEMISQ8N1K5 641 aaPredicted RBP21.1■□□□□ 0.97
VRK3-213ENST00000597215 CCDC144AA2RUR9 1427 aa21.09■□□□□ 0.97
VRK3-213ENST00000597215 TMEM131LA2VDJ0 1609 aa21.08■□□□□ 0.97
VRK3-213ENST00000597215 KIF1BO60333 1816 aa21.08■□□□□ 0.96
VRK3-213ENST00000597215 MYO5BQ9ULV0 1848 aa21.06■□□□□ 0.96
VRK3-213ENST00000597215 CHGAP10645 457 aaKnown RBP21.06■□□□□ 0.96
VRK3-213ENST00000597215 DHX57Q6P158 1386 aaKnown RBP21.06■□□□□ 0.96
VRK3-213ENST00000597215 ANKRD30BQ9BXX2 1392 aa21.06■□□□□ 0.96
VRK3-213ENST00000597215 SLIT1O75093 1534 aa21.04■□□□□ 0.96
VRK3-213ENST00000597215 ARHGAP23Q9P227 1491 aa21.02■□□□□ 0.96
VRK3-213ENST00000597215 TMEM2Q9UHN6 1383 aa21.02■□□□□ 0.96
VRK3-213ENST00000597215 POLR1AO95602 1720 aaPredicted RBP21.01■□□□□ 0.95
VRK3-213ENST00000597215 STRCQ7RTU9 1775 aa21■□□□□ 0.95
VRK3-213ENST00000597215 ANKLE2Q86XL3 938 aa20.99■□□□□ 0.95
VRK3-213ENST00000597215 NEURL4Q96JN8 1562 aa20.97■□□□□ 0.95
VRK3-213ENST00000597215 SCAF11Q99590 1463 aaKnown RBP20.97■□□□□ 0.95
VRK3-213ENST00000597215 ZNF326Q5BKZ1 582 aaKnown RBP20.97■□□□□ 0.95
VRK3-213ENST00000597215 EID1Q9Y6B2 187 aa20.97■□□□□ 0.95
VRK3-213ENST00000597215 ZFYVE9O95405 1425 aa20.96■□□□□ 0.95
VRK3-213ENST00000597215 RIMS2Q9UQ26 1411 aa20.96■□□□□ 0.95
VRK3-213ENST00000597215 NCKAP5LQ9HCH0 1330 aa20.96■□□□□ 0.95
VRK3-213ENST00000597215 SPATA31E1Q6ZUB1 1445 aa20.95■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms