RNA–Protein interactions for RNA: ENST00000596676.2

SMCO4-206, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 BASIC

Gene SMCO4, Length 180 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-206ENST00000596676 ADAMTSL3P82987 1691 aa23.28■■□□□ 1.32
SMCO4-206ENST00000596676 RNF17Q9BXT8 1623 aaKnown RBP23.27■■□□□ 1.32
SMCO4-206ENST00000596676 MADDQ8WXG6 1647 aa23.26■■□□□ 1.31
SMCO4-206ENST00000596676 SETD5Q9C0A6 1442 aa23.26■■□□□ 1.31
SMCO4-206ENST00000596676 PCGF6Q9BYE7 350 aa23.25■■□□□ 1.31
SMCO4-206ENST00000596676 PLPPR3Q6T4P5 718 aa23.23■■□□□ 1.31
SMCO4-206ENST00000596676 DEPDC5O75140 1603 aa23.22■■□□□ 1.31
SMCO4-206ENST00000596676 FER1L4A9Z1Z3 1794 aa23.22■■□□□ 1.31
SMCO4-206ENST00000596676 RAB3GAP2Q9H2M9 1393 aa23.22■■□□□ 1.31
SMCO4-206ENST00000596676 RIMS1Q86UR5 1692 aaKnown RBP23.22■■□□□ 1.31
SMCO4-206ENST00000596676 CLTCQ00610 1675 aaKnown RBP23.21■■□□□ 1.31
SMCO4-206ENST00000596676 WASHC2CQ9Y4E1 1318 aa23.2■■□□□ 1.3
SMCO4-206ENST00000596676 CEBPAP49715 358 aaPredicted RBP23.2■■□□□ 1.3
SMCO4-206ENST00000596676 UNC13BO14795 1591 aa23.19■■□□□ 1.3
SMCO4-206ENST00000596676 PRDM15P57071 1507 aaPredicted RBP23.19■■□□□ 1.3
SMCO4-206ENST00000596676 TRIM52Q96A61 297 aa23.19■■□□□ 1.3
SMCO4-206ENST00000596676 CEP152O94986 1710 aa23.19■■□□□ 1.3
SMCO4-206ENST00000596676 NUP155O75694 1391 aa23.18■■□□□ 1.3
SMCO4-206ENST00000596676 ESF1Q9H501 851 aaKnown RBP23.18■■□□□ 1.3
SMCO4-206ENST00000596676 ABCC3O15438 1527 aa23.18■■□□□ 1.3
SMCO4-206ENST00000596676 VWDEQ8N2E2 1590 aa23.16■■□□□ 1.3
SMCO4-206ENST00000596676 KDM5DQ9BY66 1539 aa23.15■■□□□ 1.3
SMCO4-206ENST00000596676 PPP6R1Q9UPN7 881 aa23.15■■□□□ 1.3
SMCO4-206ENST00000596676 KANK1Q14678 1352 aa23.14■■□□□ 1.3
SMCO4-206ENST00000596676 ZMYM3Q14202 1370 aa23.14■■□□□ 1.29
SMCO4-206ENST00000596676 PTPRMP28827 1452 aa23.13■■□□□ 1.29
SMCO4-206ENST00000596676 FBXO31Q5XUX0 539 aaPredicted RBP23.11■■□□□ 1.29
SMCO4-206ENST00000596676 CNTLNQ9NXG0 1405 aa23.1■■□□□ 1.29
SMCO4-206ENST00000596676 IQGAP3Q86VI3 1631 aa23.1■■□□□ 1.29
SMCO4-206ENST00000596676 PZPP20742 1482 aa23.1■■□□□ 1.29
SMCO4-206ENST00000596676 C3P01024 1663 aa23.09■■□□□ 1.29
SMCO4-206ENST00000596676 FAM135AQ9P2D6 1515 aa23.09■■□□□ 1.29
SMCO4-206ENST00000596676 CFAP65Q6ZU64 1925 aaKnown RBP23.09■■□□□ 1.29
SMCO4-206ENST00000596676 CAMSAP1Q5T5Y3 1602 aa23.08■■□□□ 1.29
SMCO4-206ENST00000596676 LMTK2Q8IWU2 1503 aa23.08■■□□□ 1.28
SMCO4-206ENST00000596676 MROH2AA6NES4 1674 aa23.07■■□□□ 1.28
SMCO4-206ENST00000596676 ZC3H13Q5T200 1668 aaKnown RBP23.07■■□□□ 1.28
SMCO4-206ENST00000596676 FOXD1Q16676 465 aa23.05■■□□□ 1.28
SMCO4-206ENST00000596676 SLC4A1APQ9BWU0 796 aaKnown RBP23.05■■□□□ 1.28
SMCO4-206ENST00000596676 HRCP23327 699 aa23.04■■□□□ 1.28
SMCO4-206ENST00000596676 MPHOSPH9Q99550 1183 aa23.04■■□□□ 1.28
SMCO4-206ENST00000596676 NPATQ14207 1427 aa23.04■■□□□ 1.28
SMCO4-206ENST00000596676 TET3O43151 1660 aa23.03■■□□□ 1.28
SMCO4-206ENST00000596676 EFCAB6Q5THR3 1501 aa23.03■■□□□ 1.28
SMCO4-206ENST00000596676 PKD2Q13563 968 aa23.02■■□□□ 1.28
SMCO4-206ENST00000596676 E9PCH4 1651 aa23.02■■□□□ 1.28
SMCO4-206ENST00000596676 ARHGAP31Q2M1Z3 1444 aa22.99■■□□□ 1.27
SMCO4-206ENST00000596676 ERVK-7P63135 1459 aa22.97■■□□□ 1.27
SMCO4-206ENST00000596676 PREX1Q8TCU6 1659 aa22.96■■□□□ 1.27
SMCO4-206ENST00000596676 TNRQ92752 1358 aa22.92■■□□□ 1.26
SMCO4-206ENST00000596676 SPATA31D1Q6ZQQ2 1576 aa22.92■■□□□ 1.26
SMCO4-206ENST00000596676 NOS1P29475 1434 aa22.91■■□□□ 1.26
SMCO4-206ENST00000596676 SYNMO15061 1565 aa22.91■■□□□ 1.26
SMCO4-206ENST00000596676 ACIN1Q9UKV3 1341 aaKnown RBP22.9■■□□□ 1.26
SMCO4-206ENST00000596676 AEBP2Q6ZN18 517 aaPredicted RBP22.9■■□□□ 1.26
SMCO4-206ENST00000596676 PLA2R1Q13018 1463 aa22.9■■□□□ 1.26
SMCO4-206ENST00000596676 RPRD2Q5VT52 1461 aaKnown RBP22.9■■□□□ 1.26
SMCO4-206ENST00000596676 UGGT1Q9NYU2 1555 aa22.89■■□□□ 1.26
SMCO4-206ENST00000596676 DHX57Q6P158 1386 aaKnown RBP22.87■■□□□ 1.25
SMCO4-206ENST00000596676 PTPRTO14522 1441 aa22.86■■□□□ 1.25
SMCO4-206ENST00000596676 IDI1Q13907 227 aa22.86■■□□□ 1.25
SMCO4-206ENST00000596676 SETD1BQ9UPS6 1966 aaKnown RBP22.86■■□□□ 1.25
SMCO4-206ENST00000596676 SPHKAPQ2M3C7 1700 aa22.85■■□□□ 1.25
SMCO4-206ENST00000596676 MYO3AQ8NEV4 1616 aa22.84■■□□□ 1.25
SMCO4-206ENST00000596676 ANKRD30BQ9BXX2 1392 aa22.8■■□□□ 1.24
SMCO4-206ENST00000596676 CLTCL1P53675 1640 aa22.8■■□□□ 1.24
SMCO4-206ENST00000596676 UHRF1BP1Q6BDS2 1440 aa22.8■■□□□ 1.24
SMCO4-206ENST00000596676 PIK3C2BO00750 1634 aa22.79■■□□□ 1.24
SMCO4-206ENST00000596676 TRPM2O94759 1503 aa22.79■■□□□ 1.24
SMCO4-206ENST00000596676 HSPA2P54652 639 aa22.79■■□□□ 1.24
SMCO4-206ENST00000596676 LMTK3Q96Q04 1460 aa22.79■■□□□ 1.24
SMCO4-206ENST00000596676 CHGAP10645 457 aaKnown RBP22.78■■□□□ 1.24
SMCO4-206ENST00000596676 SLC52A1Q9NWF4 448 aa22.77■■□□□ 1.24
SMCO4-206ENST00000596676 A2ML1A8K2U0 1454 aa22.77■■□□□ 1.24
SMCO4-206ENST00000596676 NLRP1Q9C000 1473 aa22.77■■□□□ 1.24
SMCO4-206ENST00000596676 CEP170BQ9Y4F5 1589 aaPredicted RBP22.76■■□□□ 1.23
SMCO4-206ENST00000596676 MYO5BQ9ULV0 1848 aa22.73■■□□□ 1.23
SMCO4-206ENST00000596676 SIN3AQ96ST3 1273 aa22.73■■□□□ 1.23
SMCO4-206ENST00000596676 ZNF142P52746 1687 aaPredicted RBP22.73■■□□□ 1.23
SMCO4-206ENST00000596676 UBR1Q8IWV7 1749 aa22.72■■□□□ 1.23
SMCO4-206ENST00000596676 STAG3Q9UJ98 1225 aa22.72■■□□□ 1.23
SMCO4-206ENST00000596676 CCDC144AA2RUR9 1427 aa22.71■■□□□ 1.23
SMCO4-206ENST00000596676 TMEM131LA2VDJ0 1609 aa22.7■■□□□ 1.22
SMCO4-206ENST00000596676 ADGRB3O60242 1522 aa22.68■■□□□ 1.22
SMCO4-206ENST00000596676 THEMISQ8N1K5 641 aaPredicted RBP22.67■■□□□ 1.22
SMCO4-206ENST00000596676 NEUROD1Q13562 356 aa22.66■■□□□ 1.22
SMCO4-206ENST00000596676 RGL3Q3MIN7 710 aa22.66■■□□□ 1.22
SMCO4-206ENST00000596676 NUTM2DQ5VT03 806 aaPredicted RBP22.66■■□□□ 1.22
SMCO4-206ENST00000596676 KIF1BO60333 1816 aa22.66■■□□□ 1.22
SMCO4-206ENST00000596676 SENP3Q9H4L4 574 aaPredicted RBP22.65■■□□□ 1.22
SMCO4-206ENST00000596676 NCKAP5LQ9HCH0 1330 aa22.64■■□□□ 1.22
SMCO4-206ENST00000596676 ZNF326Q5BKZ1 582 aaKnown RBP22.64■■□□□ 1.21
SMCO4-206ENST00000596676 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.21
SMCO4-206ENST00000596676 LTKP29376 864 aa22.63■■□□□ 1.21
SMCO4-206ENST00000596676 SPATA31E1Q6ZUB1 1445 aa22.62■■□□□ 1.21
SMCO4-206ENST00000596676 TMEM2Q9UHN6 1383 aa22.61■■□□□ 1.21
SMCO4-206ENST00000596676 KDM5AP29375 1690 aaKnown RBP22.6■■□□□ 1.21
SMCO4-206ENST00000596676 RIMS2Q9UQ26 1411 aa22.59■■□□□ 1.21
SMCO4-206ENST00000596676 ARHGAP23Q9P227 1491 aa22.59■■□□□ 1.21
SMCO4-206ENST00000596676 TXNDC2Q86VQ3 553 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms