RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 RNF17Q9BXT8 1623 aaKnown RBP16.03■□□□□ 0.16
LIG1-210ENST00000596332 MADDQ8WXG6 1647 aa16.02■□□□□ 0.16
LIG1-210ENST00000596332 PPP6R1Q9UPN7 881 aa16.01■□□□□ 0.15
LIG1-210ENST00000596332 DEPDC5O75140 1603 aa16.01■□□□□ 0.15
LIG1-210ENST00000596332 VWDEQ8N2E2 1590 aa16■□□□□ 0.15
LIG1-210ENST00000596332 KDM5DQ9BY66 1539 aa15.99■□□□□ 0.15
LIG1-210ENST00000596332 GCC2Q8IWJ2 1684 aa15.98■□□□□ 0.15
LIG1-210ENST00000596332 PRDM15P57071 1507 aaPredicted RBP15.98■□□□□ 0.15
LIG1-210ENST00000596332 PTPRMP28827 1452 aa15.97■□□□□ 0.15
LIG1-210ENST00000596332 CEBPAP49715 358 aaPredicted RBP15.97■□□□□ 0.15
LIG1-210ENST00000596332 TRIM26Q12899 539 aaPredicted RBP15.97■□□□□ 0.15
LIG1-210ENST00000596332 ZMYM3Q14202 1370 aa15.96■□□□□ 0.15
LIG1-210ENST00000596332 UNC13BO14795 1591 aa15.96■□□□□ 0.14
LIG1-210ENST00000596332 ABCC3O15438 1527 aa15.95■□□□□ 0.14
LIG1-210ENST00000596332 SETD5Q9C0A6 1442 aa15.94■□□□□ 0.14
LIG1-210ENST00000596332 RIMS1Q86UR5 1692 aaKnown RBP15.94■□□□□ 0.14
LIG1-210ENST00000596332 FER1L4A9Z1Z3 1794 aa15.94■□□□□ 0.14
LIG1-210ENST00000596332 LMTK2Q8IWU2 1503 aa15.94■□□□□ 0.14
LIG1-210ENST00000596332 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.93■□□□□ 0.14
LIG1-210ENST00000596332 FAM135AQ9P2D6 1515 aa15.93■□□□□ 0.14
LIG1-210ENST00000596332 CNTLNQ9NXG0 1405 aa15.93■□□□□ 0.14
LIG1-210ENST00000596332 WASHC2CQ9Y4E1 1318 aa15.93■□□□□ 0.14
LIG1-210ENST00000596332 CLTCQ00610 1675 aaKnown RBP15.92■□□□□ 0.14
LIG1-210ENST00000596332 RAB3GAP2Q9H2M9 1393 aa15.91■□□□□ 0.14
LIG1-210ENST00000596332 FBXO31Q5XUX0 539 aaPredicted RBP15.91■□□□□ 0.14
LIG1-210ENST00000596332 NUP155O75694 1391 aa15.9■□□□□ 0.14
LIG1-210ENST00000596332 MROH2AA6NES4 1674 aa15.9■□□□□ 0.14
LIG1-210ENST00000596332 C3P01024 1663 aa15.9■□□□□ 0.14
LIG1-210ENST00000596332 SENP3Q9H4L4 574 aaPredicted RBP15.9■□□□□ 0.14
LIG1-210ENST00000596332 ARHGAP31Q2M1Z3 1444 aa15.89■□□□□ 0.13
LIG1-210ENST00000596332 HRCP23327 699 aa15.89■□□□□ 0.13
LIG1-210ENST00000596332 PZPP20742 1482 aa15.89■□□□□ 0.13
LIG1-210ENST00000596332 CEP152O94986 1710 aa15.88■□□□□ 0.13
LIG1-210ENST00000596332 NPATQ14207 1427 aa15.88■□□□□ 0.13
LIG1-210ENST00000596332 IQGAP3Q86VI3 1631 aa15.88■□□□□ 0.13
LIG1-210ENST00000596332 ZC3H13Q5T200 1668 aaKnown RBP15.86■□□□□ 0.13
LIG1-210ENST00000596332 CAMSAP1Q5T5Y3 1602 aa15.86■□□□□ 0.13
LIG1-210ENST00000596332 KANK1Q14678 1352 aa15.85■□□□□ 0.13
LIG1-210ENST00000596332 ESF1Q9H501 851 aaKnown RBP15.84■□□□□ 0.13
LIG1-210ENST00000596332 EFCAB6Q5THR3 1501 aa15.84■□□□□ 0.13
LIG1-210ENST00000596332 NOS1P29475 1434 aa15.83■□□□□ 0.12
LIG1-210ENST00000596332 TET3O43151 1660 aa15.83■□□□□ 0.12
LIG1-210ENST00000596332 PLPPR3Q6T4P5 718 aa15.82■□□□□ 0.12
LIG1-210ENST00000596332 SPATA31D1Q6ZQQ2 1576 aa15.82■□□□□ 0.12
LIG1-210ENST00000596332 E9PCH4 1651 aa15.81■□□□□ 0.12
LIG1-210ENST00000596332 ERVK-7P63135 1459 aa15.81■□□□□ 0.12
LIG1-210ENST00000596332 PLA2R1Q13018 1463 aa15.81■□□□□ 0.12
LIG1-210ENST00000596332 TRIM52Q96A61 297 aa15.81■□□□□ 0.12
LIG1-210ENST00000596332 MPHOSPH9Q99550 1183 aa15.8■□□□□ 0.12
LIG1-210ENST00000596332 RPRD2Q5VT52 1461 aaKnown RBP15.78■□□□□ 0.12
LIG1-210ENST00000596332 PTPRTO14522 1441 aa15.78■□□□□ 0.12
LIG1-210ENST00000596332 PKD2Q13563 968 aa15.78■□□□□ 0.12
LIG1-210ENST00000596332 PCGF6Q9BYE7 350 aa15.78■□□□□ 0.12
LIG1-210ENST00000596332 SYNMO15061 1565 aa15.78■□□□□ 0.12
LIG1-210ENST00000596332 PREX1Q8TCU6 1659 aa15.77■□□□□ 0.12
LIG1-210ENST00000596332 FOXD1Q16676 465 aa15.77■□□□□ 0.12
LIG1-210ENST00000596332 SLC4A1APQ9BWU0 796 aaKnown RBP15.77■□□□□ 0.12
LIG1-210ENST00000596332 TNRQ92752 1358 aa15.76■□□□□ 0.11
LIG1-210ENST00000596332 LMTK3Q96Q04 1460 aa15.76■□□□□ 0.11
LIG1-210ENST00000596332 IDI1Q13907 227 aa15.75■□□□□ 0.11
LIG1-210ENST00000596332 ACIN1Q9UKV3 1341 aaKnown RBP15.74■□□□□ 0.11
LIG1-210ENST00000596332 SETD1BQ9UPS6 1966 aaKnown RBP15.73■□□□□ 0.11
LIG1-210ENST00000596332 CFAP65Q6ZU64 1925 aaKnown RBP15.73■□□□□ 0.11
LIG1-210ENST00000596332 UGGT1Q9NYU2 1555 aa15.72■□□□□ 0.11
LIG1-210ENST00000596332 PIK3C2BO00750 1634 aa15.71■□□□□ 0.11
LIG1-210ENST00000596332 MYO3AQ8NEV4 1616 aa15.71■□□□□ 0.11
LIG1-210ENST00000596332 A2ML1A8K2U0 1454 aa15.7■□□□□ 0.1
LIG1-210ENST00000596332 NLRP1Q9C000 1473 aa15.7■□□□□ 0.1
LIG1-210ENST00000596332 UHRF1BP1Q6BDS2 1440 aa15.69■□□□□ 0.1
LIG1-210ENST00000596332 ANKRD30BQ9BXX2 1392 aa15.69■□□□□ 0.1
LIG1-210ENST00000596332 CEP170BQ9Y4F5 1589 aaPredicted RBP15.68■□□□□ 0.1
LIG1-210ENST00000596332 DHX57Q6P158 1386 aaKnown RBP15.68■□□□□ 0.1
LIG1-210ENST00000596332 HSPA2P54652 639 aa15.68■□□□□ 0.1
LIG1-210ENST00000596332 SLC52A1Q9NWF4 448 aa15.68■□□□□ 0.1
LIG1-210ENST00000596332 ZNF142P52746 1687 aaPredicted RBP15.67■□□□□ 0.1
LIG1-210ENST00000596332 TRPM2O94759 1503 aa15.67■□□□□ 0.1
LIG1-210ENST00000596332 SPHKAPQ2M3C7 1700 aa15.66■□□□□ 0.1
LIG1-210ENST00000596332 CLTCL1P53675 1640 aa15.65■□□□□ 0.1
LIG1-210ENST00000596332 UBR1Q8IWV7 1749 aa15.63■□□□□ 0.09
LIG1-210ENST00000596332 TMEM131LA2VDJ0 1609 aa15.63■□□□□ 0.09
LIG1-210ENST00000596332 ARHGAP23Q9P227 1491 aa15.62■□□□□ 0.09
LIG1-210ENST00000596332 LTKP29376 864 aa15.61■□□□□ 0.09
LIG1-210ENST00000596332 SPATA31E1Q6ZUB1 1445 aa15.6■□□□□ 0.09
LIG1-210ENST00000596332 ADGRB3O60242 1522 aa15.6■□□□□ 0.09
LIG1-210ENST00000596332 THEMISQ8N1K5 641 aaPredicted RBP15.6■□□□□ 0.09
LIG1-210ENST00000596332 KDM5AP29375 1690 aaKnown RBP15.6■□□□□ 0.09
LIG1-210ENST00000596332 STRCQ7RTU9 1775 aa15.59■□□□□ 0.09
LIG1-210ENST00000596332 SLIT1O75093 1534 aa15.59■□□□□ 0.09
LIG1-210ENST00000596332 TMEM2Q9UHN6 1383 aa15.59■□□□□ 0.09
LIG1-210ENST00000596332 ZFYVE9O95405 1425 aa15.59■□□□□ 0.09
LIG1-210ENST00000596332 NCKAP5LQ9HCH0 1330 aa15.58■□□□□ 0.08
LIG1-210ENST00000596332 SIN3AQ96ST3 1273 aa15.56■□□□□ 0.08
LIG1-210ENST00000596332 CCDC144AA2RUR9 1427 aa15.56■□□□□ 0.08
LIG1-210ENST00000596332 MYO5BQ9ULV0 1848 aa15.56■□□□□ 0.08
LIG1-210ENST00000596332 NEURL4Q96JN8 1562 aa15.55■□□□□ 0.08
LIG1-210ENST00000596332 MED14O60244 1454 aa15.53■□□□□ 0.08
LIG1-210ENST00000596332 CHGAP10645 457 aaKnown RBP15.53■□□□□ 0.08
LIG1-210ENST00000596332 RIMS2Q9UQ26 1411 aa15.52■□□□□ 0.08
LIG1-210ENST00000596332 TXNDC2Q86VQ3 553 aa15.52■□□□□ 0.08
LIG1-210ENST00000596332 ANKLE2Q86XL3 938 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms