RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 STRCP1A6NGW2 1772 aa20.77■□□□□ 0.92
SCAF1-202ENST00000595242 ANKLE2Q86XL3 938 aa20.77■□□□□ 0.92
SCAF1-202ENST00000595242 PLEKHH2Q8IVE3 1493 aa20.76■□□□□ 0.91
SCAF1-202ENST00000595242 TNRQ92752 1358 aa20.75■□□□□ 0.91
SCAF1-202ENST00000595242 FBXO31Q5XUX0 539 aaPredicted RBP20.75■□□□□ 0.91
SCAF1-202ENST00000595242 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.74■□□□□ 0.91
SCAF1-202ENST00000595242 RGS17Q9UGC6 210 aaPredicted RBP20.74■□□□□ 0.91
SCAF1-202ENST00000595242 DEPDC5O75140 1603 aa20.74■□□□□ 0.91
SCAF1-202ENST00000595242 IQGAP1P46940 1657 aa20.73■□□□□ 0.91
SCAF1-202ENST00000595242 CFDP1Q9UEE9 299 aaPredicted RBP20.73■□□□□ 0.91
SCAF1-202ENST00000595242 RNF17Q9BXT8 1623 aaKnown RBP20.71■□□□□ 0.91
SCAF1-202ENST00000595242 NPHP4O75161 1426 aaPredicted RBP20.71■□□□□ 0.91
SCAF1-202ENST00000595242 MED14O60244 1454 aa20.71■□□□□ 0.91
SCAF1-202ENST00000595242 THEMISQ8N1K5 641 aaPredicted RBP20.71■□□□□ 0.91
SCAF1-202ENST00000595242 PZPP20742 1482 aa20.7■□□□□ 0.9
SCAF1-202ENST00000595242 LRRC7Q96NW7 1537 aa20.69■□□□□ 0.9
SCAF1-202ENST00000595242 UGGT1Q9NYU2 1555 aa20.69■□□□□ 0.9
SCAF1-202ENST00000595242 FYCO1Q9BQS8 1478 aa20.68■□□□□ 0.9
SCAF1-202ENST00000595242 SYNMO15061 1565 aa20.68■□□□□ 0.9
SCAF1-202ENST00000595242 CCNB3Q8WWL7 1395 aa20.67■□□□□ 0.9
SCAF1-202ENST00000595242 NLRP1Q9C000 1473 aa20.66■□□□□ 0.9
SCAF1-202ENST00000595242 KDM5DQ9BY66 1539 aa20.66■□□□□ 0.9
SCAF1-202ENST00000595242 FAM135AQ9P2D6 1515 aa20.66■□□□□ 0.9
SCAF1-202ENST00000595242 DHX29Q7Z478 1369 aaKnown RBP20.65■□□□□ 0.9
SCAF1-202ENST00000595242 MIA2Q96PC5 1412 aa20.64■□□□□ 0.89
SCAF1-202ENST00000595242 KIF3BO15066 747 aa20.64■□□□□ 0.89
SCAF1-202ENST00000595242 RTEL1-TNFRSF6BF6WH68 1400 aa20.62■□□□□ 0.89
SCAF1-202ENST00000595242 XIRP1Q702N8 1843 aaKnown RBP20.62■□□□□ 0.89
SCAF1-202ENST00000595242 ZNF644Q9H582 1327 aaPredicted RBP20.62■□□□□ 0.89
SCAF1-202ENST00000595242 WASHC2CQ9Y4E1 1318 aa20.62■□□□□ 0.89
SCAF1-202ENST00000595242 MBD5Q9P267 1494 aa20.61■□□□□ 0.89
SCAF1-202ENST00000595242 CFAP65Q6ZU64 1925 aaKnown RBP20.61■□□□□ 0.89
SCAF1-202ENST00000595242 ZC3H13Q5T200 1668 aaKnown RBP20.6■□□□□ 0.89
SCAF1-202ENST00000595242 POTEAQ6S8J7 498 aa20.59■□□□□ 0.89
SCAF1-202ENST00000595242 SETD1AO15047 1707 aaKnown RBP20.56■□□□□ 0.88
SCAF1-202ENST00000595242 TIAM1Q13009 1591 aa20.55■□□□□ 0.88
SCAF1-202ENST00000595242 MTUS2Q5JR59 1369 aa20.53■□□□□ 0.88
SCAF1-202ENST00000595242 UBR1Q8IWV7 1749 aa20.52■□□□□ 0.88
SCAF1-202ENST00000595242 FAM135BQ49AJ0 1406 aa20.48■□□□□ 0.87
SCAF1-202ENST00000595242 CCDC141Q6ZP82 1450 aa20.48■□□□□ 0.87
SCAF1-202ENST00000595242 SCAF11Q99590 1463 aaKnown RBP20.46■□□□□ 0.87
SCAF1-202ENST00000595242 ROBO1Q9Y6N7 1651 aa20.45■□□□□ 0.86
SCAF1-202ENST00000595242 ERVK-7P63135 1459 aa20.43■□□□□ 0.86
SCAF1-202ENST00000595242 ABCC3O15438 1527 aa20.43■□□□□ 0.86
SCAF1-202ENST00000595242 EHBP1L1Q8N3D4 1523 aa20.43■□□□□ 0.86
SCAF1-202ENST00000595242 CEP152O94986 1710 aa20.42■□□□□ 0.86
SCAF1-202ENST00000595242 LTKP29376 864 aa20.42■□□□□ 0.86
SCAF1-202ENST00000595242 RSPH4AQ5TD94 716 aa20.42■□□□□ 0.86
SCAF1-202ENST00000595242 TXNDC2Q86VQ3 553 aa20.41■□□□□ 0.86
SCAF1-202ENST00000595242 CAMSAP2Q08AD1 1489 aa20.41■□□□□ 0.86
SCAF1-202ENST00000595242 SLIT1O75093 1534 aa20.39■□□□□ 0.85
SCAF1-202ENST00000595242 NCOA2Q15596 1464 aa20.39■□□□□ 0.85
SCAF1-202ENST00000595242 ARHGAP23Q9P227 1491 aa20.39■□□□□ 0.85
SCAF1-202ENST00000595242 CEP162Q5TB80 1403 aa20.39■□□□□ 0.85
SCAF1-202ENST00000595242 PHLPP1O60346 1717 aa20.36■□□□□ 0.85
SCAF1-202ENST00000595242 TSPY4P0CV99 314 aa20.36■□□□□ 0.85
SCAF1-202ENST00000595242 TSPY10P0CW01 314 aa20.36■□□□□ 0.85
SCAF1-202ENST00000595242 ARHGEF5Q12774 1597 aa20.36■□□□□ 0.85
SCAF1-202ENST00000595242 TMEM94Q12767 1356 aa20.35■□□□□ 0.85
SCAF1-202ENST00000595242 EIF2AK4Q9P2K8 1649 aaKnown RBP20.35■□□□□ 0.85
SCAF1-202ENST00000595242 EID1Q9Y6B2 187 aa20.35■□□□□ 0.85
SCAF1-202ENST00000595242 MROH1Q8NDA8 1641 aa20.34■□□□□ 0.85
SCAF1-202ENST00000595242 MAP3K1Q13233 1512 aa20.32■□□□□ 0.84
SCAF1-202ENST00000595242 UPF1Q92900 1129 aaKnown RBP eCLIP20.32■□□□□ 0.84
SCAF1-202ENST00000595242 PIK3C2BO00750 1634 aa20.31■□□□□ 0.84
SCAF1-202ENST00000595242 LRRC9Q6ZRR7 1453 aa20.3■□□□□ 0.84
SCAF1-202ENST00000595242 RBM33Q96EV2 1170 aaKnown RBP20.3■□□□□ 0.84
SCAF1-202ENST00000595242 KCNA6P17658 529 aa20.29■□□□□ 0.84
SCAF1-202ENST00000595242 PROSER2Q86WR7 435 aaPredicted RBP20.29■□□□□ 0.84
SCAF1-202ENST00000595242 JCADQ9P266 1359 aa20.28■□□□□ 0.84
SCAF1-202ENST00000595242 MAST1Q9Y2H9 1570 aa20.28■□□□□ 0.84
SCAF1-202ENST00000595242 TMEM2Q9UHN6 1383 aa20.26■□□□□ 0.83
SCAF1-202ENST00000595242 PRDM15P57071 1507 aaPredicted RBP20.25■□□□□ 0.83
SCAF1-202ENST00000595242 KDM5AP29375 1690 aaKnown RBP20.25■□□□□ 0.83
SCAF1-202ENST00000595242 TET3O43151 1660 aa20.24■□□□□ 0.83
SCAF1-202ENST00000595242 TRIM52Q96A61 297 aa20.24■□□□□ 0.83
SCAF1-202ENST00000595242 SLAIN2Q9P270 581 aa20.24■□□□□ 0.83
SCAF1-202ENST00000595242 ARHGAP31Q2M1Z3 1444 aa20.23■□□□□ 0.83
SCAF1-202ENST00000595242 SLC26A8Q96RN1 970 aa20.23■□□□□ 0.83
SCAF1-202ENST00000595242 STAG3Q9UJ98 1225 aa20.23■□□□□ 0.83
SCAF1-202ENST00000595242 COL16A1Q07092 1604 aaPredicted RBP20.23■□□□□ 0.83
SCAF1-202ENST00000595242 SRCAPQ6ZRS2 3230 aa20.23■□□□□ 0.83
SCAF1-202ENST00000595242 MSH6P52701 1360 aa20.22■□□□□ 0.83
SCAF1-202ENST00000595242 ZNF772Q68DY9 489 aaPredicted RBP20.22■□□□□ 0.83
SCAF1-202ENST00000595242 NKTRP30414 1462 aaKnown RBP20.21■□□□□ 0.83
SCAF1-202ENST00000595242 NWD1Q149M9 1564 aa20.21■□□□□ 0.83
SCAF1-202ENST00000595242 LRP6O75581 1613 aa20.2■□□□□ 0.82
SCAF1-202ENST00000595242 MEX3CQ5U5Q3 659 aaKnown RBP20.2■□□□□ 0.82
SCAF1-202ENST00000595242 EFCAB6Q5THR3 1501 aa20.2■□□□□ 0.82
SCAF1-202ENST00000595242 CHD2O14647 1828 aaKnown RBP20.18■□□□□ 0.82
SCAF1-202ENST00000595242 DUOX2Q9NRD8 1548 aa20.18■□□□□ 0.82
SCAF1-202ENST00000595242 SPATA31A6Q5VVP1 1343 aa20.18■□□□□ 0.82
SCAF1-202ENST00000595242 LOC105371045A0A1W2PR82 267 aa20.17■□□□□ 0.82
SCAF1-202ENST00000595242 SHPRHQ149N8 1683 aa20.16■□□□□ 0.82
SCAF1-202ENST00000595242 FGD6Q6ZV73 1430 aa20.14■□□□□ 0.81
SCAF1-202ENST00000595242 RXRBP28702 533 aa20.14■□□□□ 0.81
SCAF1-202ENST00000595242 IDI1Q13907 227 aa20.14■□□□□ 0.81
SCAF1-202ENST00000595242 BCANQ96GW7 911 aa20.12■□□□□ 0.81
SCAF1-202ENST00000595242 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.11■□□□□ 0.81
SCAF1-202ENST00000595242 MYO5BQ9ULV0 1848 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms