RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 ERBINQ96RT1 1412 aa29.75■■■□□ 2.35
LSM4-203ENST00000593829 ROCK1Q13464 1354 aa29.74■■■□□ 2.35
LSM4-203ENST00000593829 CNTLNQ9NXG0 1405 aa29.74■■■□□ 2.35
LSM4-203ENST00000593829 PLPPR3Q6T4P5 718 aa29.69■■■□□ 2.34
LSM4-203ENST00000593829 RNF17Q9BXT8 1623 aaKnown RBP29.68■■■□□ 2.34
LSM4-203ENST00000593829 ANKRD50Q9ULJ7 1429 aa29.65■■■□□ 2.34
LSM4-203ENST00000593829 CEBPAP49715 358 aaPredicted RBP29.65■■■□□ 2.34
LSM4-203ENST00000593829 FAM135AQ9P2D6 1515 aa29.64■■■□□ 2.34
LSM4-203ENST00000593829 CLTCQ00610 1675 aaKnown RBP29.64■■■□□ 2.34
LSM4-203ENST00000593829 WASHC2CQ9Y4E1 1318 aa29.64■■■□□ 2.33
LSM4-203ENST00000593829 ZMYM3Q14202 1370 aa29.63■■■□□ 2.33
LSM4-203ENST00000593829 MROH2AA6NES4 1674 aa29.62■■■□□ 2.33
LSM4-203ENST00000593829 KDM5DQ9BY66 1539 aa29.62■■■□□ 2.33
LSM4-203ENST00000593829 MROH1Q8NDA8 1641 aa29.6■■■□□ 2.33
LSM4-203ENST00000593829 C3P01024 1663 aa29.59■■■□□ 2.33
LSM4-203ENST00000593829 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.57■■■□□ 2.322e-7■□□□□ 8
LSM4-203ENST00000593829 PRDM15P57071 1507 aaPredicted RBP29.57■■■□□ 2.32
LSM4-203ENST00000593829 DEPDC5O75140 1603 aa29.56■■■□□ 2.32
LSM4-203ENST00000593829 ABCC3O15438 1527 aa29.54■■■□□ 2.32
LSM4-203ENST00000593829 KANK1Q14678 1352 aa29.54■■■□□ 2.32
LSM4-203ENST00000593829 ZC3H13Q5T200 1668 aaKnown RBP29.53■■■□□ 2.32
LSM4-203ENST00000593829 NAIPQ13075 1403 aa29.49■■■□□ 2.31
LSM4-203ENST00000593829 NPATQ14207 1427 aa29.49■■■□□ 2.31
LSM4-203ENST00000593829 HFM1A2PYH4 1435 aa29.48■■■□□ 2.31
LSM4-203ENST00000593829 PCGF6Q9BYE7 350 aa29.47■■■□□ 2.31
LSM4-203ENST00000593829 CEP152O94986 1710 aa29.47■■■□□ 2.31
LSM4-203ENST00000593829 PZPP20742 1482 aa29.46■■■□□ 2.31
LSM4-203ENST00000593829 VWDEQ8N2E2 1590 aa29.46■■■□□ 2.31
LSM4-203ENST00000593829 GCC2Q8IWJ2 1684 aa29.44■■■□□ 2.3
LSM4-203ENST00000593829 UNC13BO14795 1591 aa29.44■■■□□ 2.3
LSM4-203ENST00000593829 SETD1BQ9UPS6 1966 aaKnown RBP29.44■■■□□ 2.3
LSM4-203ENST00000593829 CAMSAP1Q5T5Y3 1602 aa29.42■■■□□ 2.3
LSM4-203ENST00000593829 LMTK2Q8IWU2 1503 aa29.42■■■□□ 2.3
LSM4-203ENST00000593829 PREX1Q8TCU6 1659 aa29.41■■■□□ 2.3
LSM4-203ENST00000593829 FBXO31Q5XUX0 539 aaPredicted RBP29.41■■■□□ 2.3
LSM4-203ENST00000593829 LMTK3Q96Q04 1460 aa29.4■■■□□ 2.3
LSM4-203ENST00000593829 UHRF1BP1Q6BDS2 1440 aa29.39■■■□□ 2.3
LSM4-203ENST00000593829 ARHGAP31Q2M1Z3 1444 aa29.39■■■□□ 2.3
LSM4-203ENST00000593829 NUP155O75694 1391 aa29.37■■■□□ 2.29
LSM4-203ENST00000593829 TNRQ92752 1358 aa29.34■■■□□ 2.29
LSM4-203ENST00000593829 EFCAB6Q5THR3 1501 aa29.32■■■□□ 2.28
LSM4-203ENST00000593829 IQGAP3Q86VI3 1631 aa29.32■■■□□ 2.28
LSM4-203ENST00000593829 ERVK-7P63135 1459 aa29.31■■■□□ 2.28
LSM4-203ENST00000593829 TET3O43151 1660 aa29.3■■■□□ 2.28
LSM4-203ENST00000593829 SPATA31D1Q6ZQQ2 1576 aa29.3■■■□□ 2.28
LSM4-203ENST00000593829 MYO3AQ8NEV4 1616 aa29.29■■■□□ 2.28
LSM4-203ENST00000593829 HSPA2P54652 639 aa29.28■■■□□ 2.28
LSM4-203ENST00000593829 SETD5Q9C0A6 1442 aa29.26■■■□□ 2.28
LSM4-203ENST00000593829 CFAP65Q6ZU64 1925 aaKnown RBP29.26■■■□□ 2.27
LSM4-203ENST00000593829 RPRD2Q5VT52 1461 aaKnown RBP29.26■■■□□ 2.27
LSM4-203ENST00000593829 TRIM52Q96A61 297 aa29.26■■■□□ 2.27
LSM4-203ENST00000593829 NLRP1Q9C000 1473 aa29.23■■■□□ 2.27
LSM4-203ENST00000593829 CEP170BQ9Y4F5 1589 aaPredicted RBP29.23■■■□□ 2.27
LSM4-203ENST00000593829 A2ML1A8K2U0 1454 aa29.22■■■□□ 2.27
LSM4-203ENST00000593829 ZNF142P52746 1687 aaPredicted RBP29.22■■■□□ 2.27
LSM4-203ENST00000593829 NOS1P29475 1434 aa29.19■■■□□ 2.26
LSM4-203ENST00000593829 ACIN1Q9UKV3 1341 aaKnown RBP29.19■■■□□ 2.26
LSM4-203ENST00000593829 E9PCH4 1651 aa29.18■■■□□ 2.26
LSM4-203ENST00000593829 RAB3GAP2Q9H2M9 1393 aa29.15■■■□□ 2.26
LSM4-203ENST00000593829 SYNMO15061 1565 aa29.13■■■□□ 2.25
LSM4-203ENST00000593829 SLC4A1APQ9BWU0 796 aaKnown RBP29.13■■■□□ 2.25
LSM4-203ENST00000593829 SLC52A1Q9NWF4 448 aa29.12■■■□□ 2.25
LSM4-203ENST00000593829 UGGT1Q9NYU2 1555 aa29.11■■■□□ 2.25
LSM4-203ENST00000593829 THEMISQ8N1K5 641 aaPredicted RBP29.11■■■□□ 2.25
LSM4-203ENST00000593829 IDI1Q13907 227 aa29.1■■■□□ 2.25
LSM4-203ENST00000593829 PKD2Q13563 968 aa29.08■■■□□ 2.25
LSM4-203ENST00000593829 PLA2R1Q13018 1463 aa29.07■■■□□ 2.24
LSM4-203ENST00000593829 TRIM26Q12899 539 aaPredicted RBP29.06■■■□□ 2.24
LSM4-203ENST00000593829 PIK3C2BO00750 1634 aa29.04■■■□□ 2.24
LSM4-203ENST00000593829 MPHOSPH9Q99550 1183 aa29.04■■■□□ 2.24
LSM4-203ENST00000593829 STAG3Q9UJ98 1225 aa29.04■■■□□ 2.24
LSM4-203ENST00000593829 PTPRTO14522 1441 aa29.03■■■□□ 2.24
LSM4-203ENST00000593829 STRCQ7RTU9 1775 aa29.03■■■□□ 2.24
LSM4-203ENST00000593829 UBR1Q8IWV7 1749 aa29.03■■■□□ 2.24
LSM4-203ENST00000593829 SPHKAPQ2M3C7 1700 aa29.01■■■□□ 2.23
LSM4-203ENST00000593829 DMRT2Q9Y5R5 561 aa29■■■□□ 2.23
LSM4-203ENST00000593829 NCKAP5LQ9HCH0 1330 aa28.99■■■□□ 2.23
LSM4-203ENST00000593829 KDM5AP29375 1690 aaKnown RBP28.99■■■□□ 2.23
LSM4-203ENST00000593829 ANKLE2Q86XL3 938 aa28.97■■■□□ 2.23
LSM4-203ENST00000593829 ADGRB3O60242 1522 aa28.97■■■□□ 2.23
LSM4-203ENST00000593829 FOXD1Q16676 465 aa28.95■■■□□ 2.23
LSM4-203ENST00000593829 TRPM2O94759 1503 aa28.95■■■□□ 2.23
LSM4-203ENST00000593829 CHGAP10645 457 aaKnown RBP28.92■■■□□ 2.22
LSM4-203ENST00000593829 TMEM2Q9UHN6 1383 aa28.92■■■□□ 2.22
LSM4-203ENST00000593829 SLIT1O75093 1534 aa28.92■■■□□ 2.22
LSM4-203ENST00000593829 ARHGAP23Q9P227 1491 aa28.91■■■□□ 2.22
LSM4-203ENST00000593829 TMEM131LA2VDJ0 1609 aa28.9■■■□□ 2.22
LSM4-203ENST00000593829 POLR1AO95602 1720 aaPredicted RBP28.89■■■□□ 2.22
LSM4-203ENST00000593829 EID1Q9Y6B2 187 aa28.88■■■□□ 2.21
LSM4-203ENST00000593829 TXNDC2Q86VQ3 553 aa28.87■■■□□ 2.21
LSM4-203ENST00000593829 CLTCL1P53675 1640 aa28.87■■■□□ 2.21
LSM4-203ENST00000593829 NEURL4Q96JN8 1562 aa28.86■■■□□ 2.21
LSM4-203ENST00000593829 LTKP29376 864 aa28.85■■■□□ 2.21
LSM4-203ENST00000593829 SCAF11Q99590 1463 aaKnown RBP28.85■■■□□ 2.21
LSM4-203ENST00000593829 MED14O60244 1454 aa28.84■■■□□ 2.21
LSM4-203ENST00000593829 MYO5BQ9ULV0 1848 aa28.84■■■□□ 2.21
LSM4-203ENST00000593829 NPHP4O75161 1426 aaPredicted RBP28.82■■■□□ 2.2
LSM4-203ENST00000593829 HDGFP51858 240 aaKnown RBP28.81■■■□□ 2.2
LSM4-203ENST00000593829 CCDC144AA2RUR9 1427 aa28.81■■■□□ 2.2
LSM4-203ENST00000593829 RIMS2Q9UQ26 1411 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms