RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ZFYVE16Q7Z3T8 1539 aa27.49■■□□□ 1.99
CLIP3-206ENST00000593074 SCAPERQ9BY12 1400 aa27.47■■□□□ 1.99
CLIP3-206ENST00000593074 ADGRL1O94910 1474 aa27.47■■□□□ 1.99
CLIP3-206ENST00000593074 USP47Q96K76 1375 aa27.46■■□□□ 1.99
CLIP3-206ENST00000593074 PLA2R1Q13018 1463 aa27.46■■□□□ 1.99
CLIP3-206ENST00000593074 CCDC144AA2RUR9 1427 aa27.46■■□□□ 1.99
CLIP3-206ENST00000593074 KIF7Q2M1P5 1343 aa27.44■■□□□ 1.98
CLIP3-206ENST00000593074 ATP10AO60312 1499 aa27.44■■□□□ 1.98
CLIP3-206ENST00000593074 INO80Q9ULG1 1556 aaPredicted RBP27.42■■□□□ 1.98
CLIP3-206ENST00000593074 ZNF326Q5BKZ1 582 aaKnown RBP27.41■■□□□ 1.98
CLIP3-206ENST00000593074 BCORL1Q5H9F3 1711 aa27.4■■□□□ 1.98
CLIP3-206ENST00000593074 CD109Q6YHK3 1445 aa27.4■■□□□ 1.98
CLIP3-206ENST00000593074 MYT1LQ9UL68 1186 aa27.39■■□□□ 1.98
CLIP3-206ENST00000593074 ATP7AQ04656 1500 aa27.38■■□□□ 1.97
CLIP3-206ENST00000593074 DEPDC5O75140 1603 aa27.37■■□□□ 1.97
CLIP3-206ENST00000593074 DCAF11Q8TEB1 546 aa27.34■■□□□ 1.97
CLIP3-206ENST00000593074 ARID4BQ4LE39 1312 aaPredicted RBP27.34■■□□□ 1.97
CLIP3-206ENST00000593074 TRPM1Q7Z4N2 1603 aa27.34■■□□□ 1.97
CLIP3-206ENST00000593074 PRAG1Q86YV5 1406 aa27.34■■□□□ 1.97
CLIP3-206ENST00000593074 KDM2AQ9Y2K7 1162 aa27.32■■□□□ 1.96
CLIP3-206ENST00000593074 A2MP01023 1474 aa27.32■■□□□ 1.96
CLIP3-206ENST00000593074 DHX29Q7Z478 1369 aaKnown RBP27.3■■□□□ 1.96
CLIP3-206ENST00000593074 CYB5RLQ6IPT4 315 aa27.3■■□□□ 1.96
CLIP3-206ENST00000593074 CARD11Q9BXL7 1154 aa27.3■■□□□ 1.96
CLIP3-206ENST00000593074 CFAP74Q9C0B2 1584 aa27.29■■□□□ 1.96
CLIP3-206ENST00000593074 ZNF518AQ6AHZ1 1483 aa27.29■■□□□ 1.96
CLIP3-206ENST00000593074 E9PCH4 1651 aa27.29■■□□□ 1.96
CLIP3-206ENST00000593074 EIF2AK4Q9P2K8 1649 aaKnown RBP27.28■■□□□ 1.96
CLIP3-206ENST00000593074 PRKRIP1Q9H875 184 aaPredicted RBP27.28■■□□□ 1.96
CLIP3-206ENST00000593074 KIF3BO15066 747 aa27.26■■□□□ 1.95
CLIP3-206ENST00000593074 LAMC1P11047 1609 aa27.26■■□□□ 1.95
CLIP3-206ENST00000593074 VWDEQ8N2E2 1590 aa27.26■■□□□ 1.95
CLIP3-206ENST00000593074 KANK1Q14678 1352 aa27.26■■□□□ 1.95
CLIP3-206ENST00000593074 ROCK2O75116 1388 aaKnown RBP27.25■■□□□ 1.95
CLIP3-206ENST00000593074 TET3O43151 1660 aa27.24■■□□□ 1.95
CLIP3-206ENST00000593074 RGL3Q3MIN7 710 aa27.24■■□□□ 1.95
CLIP3-206ENST00000593074 TRPM2O94759 1503 aa27.23■■□□□ 1.95
CLIP3-206ENST00000593074 GPRASP1Q5JY77 1395 aa27.23■■□□□ 1.95
CLIP3-206ENST00000593074 PRDM15P57071 1507 aaPredicted RBP27.21■■□□□ 1.95
CLIP3-206ENST00000593074 POGZQ7Z3K3 1410 aa27.21■■□□□ 1.95
CLIP3-206ENST00000593074 SPHKAPQ2M3C7 1700 aa27.2■■□□□ 1.95
CLIP3-206ENST00000593074 KIDINS220Q9ULH0 1771 aa27.2■■□□□ 1.95
CLIP3-206ENST00000593074 SUPT16HQ9Y5B9 1047 aaKnown RBP27.2■■□□□ 1.94
CLIP3-206ENST00000593074 PTPRTO14522 1441 aa27.19■■□□□ 1.94
CLIP3-206ENST00000593074 MROH1Q8NDA8 1641 aa27.19■■□□□ 1.94
CLIP3-206ENST00000593074 NEO1Q92859 1461 aa27.18■■□□□ 1.94
CLIP3-206ENST00000593074 RIMBP3CA6NJZ7 1639 aa27.17■■□□□ 1.94
CLIP3-206ENST00000593074 RIMBP3BA6NNM3 1639 aa27.17■■□□□ 1.94
CLIP3-206ENST00000593074 RIMBP3Q9UFD9 1639 aa27.17■■□□□ 1.94
CLIP3-206ENST00000593074 CEP152O94986 1710 aa27.16■■□□□ 1.94
CLIP3-206ENST00000593074 MLH3Q9UHC1 1453 aa27.16■■□□□ 1.94
CLIP3-206ENST00000593074 ST20-MTHFSA0A0A6YYL1 179 aa27.16■■□□□ 1.94
CLIP3-206ENST00000593074 RNF17Q9BXT8 1623 aaKnown RBP27.14■■□□□ 1.94
CLIP3-206ENST00000593074 CLTCL1P53675 1640 aa27.12■■□□□ 1.93
CLIP3-206ENST00000593074 CCDC184Q52MB2 194 aa27.12■■□□□ 1.93
CLIP3-206ENST00000593074 MADDQ8WXG6 1647 aa27.09■■□□□ 1.93
CLIP3-206ENST00000593074 NEURL4Q96JN8 1562 aa27.08■■□□□ 1.93
CLIP3-206ENST00000593074 HECW2Q9P2P5 1572 aa27.08■■□□□ 1.93
CLIP3-206ENST00000593074 NBPF1Q3BBV0 1214 aa27.08■■□□□ 1.93
CLIP3-206ENST00000593074 RAPGEF3O95398 923 aa27.07■■□□□ 1.92
CLIP3-206ENST00000593074 GLI2P10070 1586 aa27.07■■□□□ 1.92
CLIP3-206ENST00000593074 HNRNPUQ00839 825 aaKnown RBP eCLIP27.07■■□□□ 1.92
CLIP3-206ENST00000593074 MAP3K4Q9Y6R4 1608 aa27.06■■□□□ 1.92
CLIP3-206ENST00000593074 POLR3GLQ9BT43 218 aa27.06■■□□□ 1.92
CLIP3-206ENST00000593074 MRS2Q9HD23 443 aa27.06■■□□□ 1.92
CLIP3-206ENST00000593074 EFCAB6Q5THR3 1501 aa27.05■■□□□ 1.92
CLIP3-206ENST00000593074 LMTK2Q8IWU2 1503 aa27.04■■□□□ 1.92
CLIP3-206ENST00000593074 COL17A1Q9UMD9 1497 aaPredicted RBP27.03■■□□□ 1.92
CLIP3-206ENST00000593074 PELP1Q8IZL8 1130 aaKnown RBP27.02■■□□□ 1.92
CLIP3-206ENST00000593074 STAC3Q96MF2 364 aa27.02■■□□□ 1.92
CLIP3-206ENST00000593074 FAM69CQ0P6D2 419 aa27.01■■□□□ 1.91
CLIP3-206ENST00000593074 FRMPD1Q5SYB0 1578 aa27■■□□□ 1.91
CLIP3-206ENST00000593074 PPRC1Q5VV67 1664 aaKnown RBP27■■□□□ 1.91
CLIP3-206ENST00000593074 GGT6Q6P531 493 aa26.98■■□□□ 1.91
CLIP3-206ENST00000593074 ABCA6Q8N139 1617 aa26.97■■□□□ 1.91
CLIP3-206ENST00000593074 IQGAP1P46940 1657 aa26.97■■□□□ 1.91
CLIP3-206ENST00000593074 TESK2Q96S53 571 aa26.96■■□□□ 1.91
CLIP3-206ENST00000593074 KTN1Q86UP2 1357 aaKnown RBP26.95■■□□□ 1.9
CLIP3-206ENST00000593074 FAM9BQ8IZU0 186 aa26.94■■□□□ 1.9
CLIP3-206ENST00000593074 KIAA1210Q9ULL0 1709 aa26.92■■□□□ 1.9
CLIP3-206ENST00000593074 RICTORQ6R327 1708 aa26.92■■□□□ 1.9
CLIP3-206ENST00000593074 DIP2BQ9P265 1576 aa26.91■■□□□ 1.9
CLIP3-206ENST00000593074 DISP3Q9P2K9 1392 aa26.91■■□□□ 1.9
CLIP3-206ENST00000593074 UGGT1Q9NYU2 1555 aa26.91■■□□□ 1.9
CLIP3-206ENST00000593074 WASHC2CQ9Y4E1 1318 aa26.9■■□□□ 1.9
CLIP3-206ENST00000593074 KIF1BO60333 1816 aa26.9■■□□□ 1.9
CLIP3-206ENST00000593074 MYOM2P54296 1465 aa26.9■■□□□ 1.9
CLIP3-206ENST00000593074 ZBED9Q6R2W3 1325 aa26.9■■□□□ 1.9
CLIP3-206ENST00000593074 DIP2CQ9Y2E4 1556 aa26.9■■□□□ 1.9
CLIP3-206ENST00000593074 FKBP8Q14318 412 aa26.89■■□□□ 1.9
CLIP3-206ENST00000593074 IFT172Q9UG01 1749 aa26.88■■□□□ 1.89
CLIP3-206ENST00000593074 NEFLP07196 543 aa26.88■■□□□ 1.89
CLIP3-206ENST00000593074 SCAF11Q99590 1463 aaKnown RBP26.85■■□□□ 1.89
CLIP3-206ENST00000593074 MROH2AA6NES4 1674 aa26.85■■□□□ 1.89
CLIP3-206ENST00000593074 NPATQ14207 1427 aa26.85■■□□□ 1.89
CLIP3-206ENST00000593074 RALBP1Q15311 655 aa26.85■■□□□ 1.89
CLIP3-206ENST00000593074 YEATS2Q9ULM3 1422 aa26.84■■□□□ 1.89
CLIP3-206ENST00000593074 TMF1P82094 1093 aa26.83■■□□□ 1.89
CLIP3-206ENST00000593074 ABCC3O15438 1527 aa26.83■■□□□ 1.89
CLIP3-206ENST00000593074 ADGRB3O60242 1522 aa26.83■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms