RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 STRCQ7RTU9 1775 aa21.53■■□□□ 1.04
CLIP3-205ENST00000592017 NCOA1Q15788 1441 aa21.53■■□□□ 1.04
CLIP3-205ENST00000592017 RRP7BPQ9NSQ0 103 aa21.52■■□□□ 1.04
CLIP3-205ENST00000592017 TCOF1Q13428 1488 aaKnown RBP21.52■■□□□ 1.03
CLIP3-205ENST00000592017 CERKQ8TCT0 537 aa21.51■■□□□ 1.03
CLIP3-205ENST00000592017 KDM5DQ9BY66 1539 aa21.5■■□□□ 1.03
CLIP3-205ENST00000592017 PTPRTO14522 1441 aa21.5■■□□□ 1.03
CLIP3-205ENST00000592017 DAPK1P53355 1430 aa21.5■■□□□ 1.03
CLIP3-205ENST00000592017 NCKAP5LQ9HCH0 1330 aa21.5■■□□□ 1.03
CLIP3-205ENST00000592017 KIF15Q9NS87 1388 aa21.49■■□□□ 1.03
CLIP3-205ENST00000592017 FAM50AQ14320 339 aaKnown RBP21.49■■□□□ 1.03
CLIP3-205ENST00000592017 TNRQ92752 1358 aa21.48■■□□□ 1.03
CLIP3-205ENST00000592017 PZPP20742 1482 aa21.48■■□□□ 1.03
CLIP3-205ENST00000592017 SHANK2Q9UPX8 1470 aa21.48■■□□□ 1.03
CLIP3-205ENST00000592017 CHIC2Q9UKJ5 165 aa21.48■■□□□ 1.03
CLIP3-205ENST00000592017 FAM135AQ9P2D6 1515 aa21.48■■□□□ 1.03
CLIP3-205ENST00000592017 CAMSAP1Q5T5Y3 1602 aa21.47■■□□□ 1.03
CLIP3-205ENST00000592017 DUOX2Q9NRD8 1548 aa21.46■■□□□ 1.03
CLIP3-205ENST00000592017 DNMT1P26358 1616 aaKnown RBP21.45■■□□□ 1.02
CLIP3-205ENST00000592017 MYO3AQ8NEV4 1616 aa21.44■■□□□ 1.02
CLIP3-205ENST00000592017 CROCC2H7BZ55 1655 aa21.44■■□□□ 1.02
CLIP3-205ENST00000592017 A2ML1A8K2U0 1454 aa21.44■■□□□ 1.02
CLIP3-205ENST00000592017 ABCC3O15438 1527 aa21.44■■□□□ 1.02
CLIP3-205ENST00000592017 CEP170BQ9Y4F5 1589 aaPredicted RBP21.44■■□□□ 1.02
CLIP3-205ENST00000592017 RNF17Q9BXT8 1623 aaKnown RBP21.44■■□□□ 1.02
CLIP3-205ENST00000592017 PKD2Q13563 968 aa21.42■■□□□ 1.02
CLIP3-205ENST00000592017 PLA2R1Q13018 1463 aa21.41■■□□□ 1.02
CLIP3-205ENST00000592017 ANKRD30AQ9BXX3 1397 aa21.41■■□□□ 1.02
CLIP3-205ENST00000592017 MROH1Q8NDA8 1641 aa21.4■■□□□ 1.02
CLIP3-205ENST00000592017 ERBINQ96RT1 1412 aa21.4■■□□□ 1.02
CLIP3-205ENST00000592017 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLIP3-205ENST00000592017 EIF2AK4Q9P2K8 1649 aaKnown RBP21.4■■□□□ 1.02
CLIP3-205ENST00000592017 ZNF142P52746 1687 aaPredicted RBP21.38■■□□□ 1.01
CLIP3-205ENST00000592017 NLRP1Q9C000 1473 aa21.34■■□□□ 1.01
CLIP3-205ENST00000592017 THEMISQ8N1K5 641 aaPredicted RBP21.34■■□□□ 1.01
CLIP3-205ENST00000592017 ERVK-7P63135 1459 aa21.33■■□□□ 1.01
CLIP3-205ENST00000592017 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.33■■□□□ 1
CLIP3-205ENST00000592017 LTBP4Q8N2S1 1624 aa21.33■■□□□ 1
CLIP3-205ENST00000592017 ADGRL2O95490 1459 aa21.32■■□□□ 1
CLIP3-205ENST00000592017 ZNF335Q9H4Z2 1342 aaPredicted RBP21.32■■□□□ 1
CLIP3-205ENST00000592017 SPATA31D1Q6ZQQ2 1576 aa21.31■■□□□ 1
CLIP3-205ENST00000592017 PRDM15P57071 1507 aaPredicted RBP21.31■■□□□ 1
CLIP3-205ENST00000592017 ARHGAP31Q2M1Z3 1444 aa21.3■■□□□ 1
CLIP3-205ENST00000592017 ITGAEP38570 1179 aa21.3■■□□□ 1
CLIP3-205ENST00000592017 ANKLE2Q86XL3 938 aa21.3■■□□□ 1
CLIP3-205ENST00000592017 ZC3H13Q5T200 1668 aaKnown RBP21.3■■□□□ 1
CLIP3-205ENST00000592017 KANK1Q14678 1352 aa21.29■■□□□ 1
CLIP3-205ENST00000592017 UGGT1Q9NYU2 1555 aa21.27■□□□□ 0.99
CLIP3-205ENST00000592017 ANKRD50Q9ULJ7 1429 aa21.26■□□□□ 0.99
CLIP3-205ENST00000592017 CEP152O94986 1710 aa21.25■□□□□ 0.99
CLIP3-205ENST00000592017 DEPDC5O75140 1603 aa21.25■□□□□ 0.99
CLIP3-205ENST00000592017 VWDEQ8N2E2 1590 aa21.23■□□□□ 0.99
CLIP3-205ENST00000592017 RRBP1Q9P2E9 1410 aaKnown RBP21.23■□□□□ 0.99
CLIP3-205ENST00000592017 LMTK2Q8IWU2 1503 aa21.23■□□□□ 0.99
CLIP3-205ENST00000592017 NEURL4Q96JN8 1562 aa21.23■□□□□ 0.99
CLIP3-205ENST00000592017 ROCK1Q13464 1354 aa21.21■□□□□ 0.99
CLIP3-205ENST00000592017 NPHP4O75161 1426 aaPredicted RBP21.2■□□□□ 0.98
CLIP3-205ENST00000592017 IDI1Q13907 227 aa21.19■□□□□ 0.98
CLIP3-205ENST00000592017 MED14O60244 1454 aa21.19■□□□□ 0.98
CLIP3-205ENST00000592017 LTKP29376 864 aa21.18■□□□□ 0.98
CLIP3-205ENST00000592017 IQSEC2Q5JU85 1478 aa21.18■□□□□ 0.98
CLIP3-205ENST00000592017 NOS1P29475 1434 aa21.15■□□□□ 0.98
CLIP3-205ENST00000592017 TXNDC2Q86VQ3 553 aa21.15■□□□□ 0.98
CLIP3-205ENST00000592017 CFAP65Q6ZU64 1925 aaKnown RBP21.15■□□□□ 0.98
CLIP3-205ENST00000592017 EFCAB6Q5THR3 1501 aa21.13■□□□□ 0.97
CLIP3-205ENST00000592017 ARHGAP23Q9P227 1491 aa21.13■□□□□ 0.97
CLIP3-205ENST00000592017 STAG3Q9UJ98 1225 aa21.12■□□□□ 0.97
CLIP3-205ENST00000592017 POLR1AO95602 1720 aaPredicted RBP21.12■□□□□ 0.97
CLIP3-205ENST00000592017 TMEM2Q9UHN6 1383 aa21.11■□□□□ 0.97
CLIP3-205ENST00000592017 UBAP1LF5GYI3 381 aa21.11■□□□□ 0.97
CLIP3-205ENST00000592017 UBR1Q8IWV7 1749 aa21.11■□□□□ 0.97
CLIP3-205ENST00000592017 SCAF11Q99590 1463 aaKnown RBP21.11■□□□□ 0.97
CLIP3-205ENST00000592017 SLIT1O75093 1534 aa21.1■□□□□ 0.97
CLIP3-205ENST00000592017 SLC52A1Q9NWF4 448 aa21.1■□□□□ 0.97
CLIP3-205ENST00000592017 SYNMO15061 1565 aa21.1■□□□□ 0.97
CLIP3-205ENST00000592017 EID1Q9Y6B2 187 aa21.09■□□□□ 0.97
CLIP3-205ENST00000592017 PIK3C2BO00750 1634 aa21.07■□□□□ 0.96
CLIP3-205ENST00000592017 RPRD2Q5VT52 1461 aaKnown RBP21.07■□□□□ 0.96
CLIP3-205ENST00000592017 NUP155O75694 1391 aa21.07■□□□□ 0.96
CLIP3-205ENST00000592017 CPS1P31327 1500 aa21.06■□□□□ 0.96
CLIP3-205ENST00000592017 UNC13BO14795 1591 aa21.05■□□□□ 0.96
CLIP3-205ENST00000592017 IQGAP1P46940 1657 aa21.05■□□□□ 0.96
CLIP3-205ENST00000592017 TET3O43151 1660 aa21.02■□□□□ 0.95
CLIP3-205ENST00000592017 NAIPQ13075 1403 aa21■□□□□ 0.95
CLIP3-205ENST00000592017 ADGRB3O60242 1522 aa20.99■□□□□ 0.95
CLIP3-205ENST00000592017 SLC26A8Q96RN1 970 aa20.98■□□□□ 0.95
CLIP3-205ENST00000592017 LRRC7Q96NW7 1537 aa20.98■□□□□ 0.95
CLIP3-205ENST00000592017 GCC2Q8IWJ2 1684 aa20.97■□□□□ 0.95
CLIP3-205ENST00000592017 TOM1O60784 492 aa20.97■□□□□ 0.95
CLIP3-205ENST00000592017 PIP4K2BP78356 416 aa20.97■□□□□ 0.95
CLIP3-205ENST00000592017 IQGAP3Q86VI3 1631 aa20.96■□□□□ 0.95
CLIP3-205ENST00000592017 HFM1A2PYH4 1435 aa20.96■□□□□ 0.95
CLIP3-205ENST00000592017 KDM5AP29375 1690 aaKnown RBP20.96■□□□□ 0.95
CLIP3-205ENST00000592017 CHGAP10645 457 aaKnown RBP20.96■□□□□ 0.95
CLIP3-205ENST00000592017 ZFYVE9O95405 1425 aa20.95■□□□□ 0.94
CLIP3-205ENST00000592017 SENP3Q9H4L4 574 aaPredicted RBP20.94■□□□□ 0.94
CLIP3-205ENST00000592017 STRCP1A6NGW2 1772 aa20.94■□□□□ 0.94
CLIP3-205ENST00000592017 E9PCH4 1651 aa20.93■□□□□ 0.94
CLIP3-205ENST00000592017 SCAF1Q9H7N4 1312 aaKnown RBP20.93■□□□□ 0.94
CLIP3-205ENST00000592017 RIMS2Q9UQ26 1411 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms