RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NCOA1Q15788 1441 aa18.23■□□□□ 0.51
LIG3-213ENST00000590630 ERBINQ96RT1 1412 aa18.23■□□□□ 0.51
LIG3-213ENST00000590630 SETD1BQ9UPS6 1966 aaKnown RBP18.21■□□□□ 0.51
LIG3-213ENST00000590630 RRP7BPQ9NSQ0 103 aa18.21■□□□□ 0.51
LIG3-213ENST00000590630 CHIC2Q9UKJ5 165 aa18.21■□□□□ 0.51
LIG3-213ENST00000590630 KDM5DQ9BY66 1539 aa18.19■□□□□ 0.5
LIG3-213ENST00000590630 PTPRKQ15262 1439 aa18.18■□□□□ 0.5
LIG3-213ENST00000590630 ZC3H13Q5T200 1668 aaKnown RBP18.18■□□□□ 0.5
LIG3-213ENST00000590630 PLPPR3Q6T4P5 718 aa18.17■□□□□ 0.5
LIG3-213ENST00000590630 PREX1Q8TCU6 1659 aa18.17■□□□□ 0.5
LIG3-213ENST00000590630 ROCK1Q13464 1354 aa18.17■□□□□ 0.5
LIG3-213ENST00000590630 ZMYM3Q14202 1370 aa18.17■□□□□ 0.5
LIG3-213ENST00000590630 DEPDC5O75140 1603 aa18.16■□□□□ 0.5
LIG3-213ENST00000590630 MROH1Q8NDA8 1641 aa18.16■□□□□ 0.5
LIG3-213ENST00000590630 CEBPAP49715 358 aaPredicted RBP18.16■□□□□ 0.5
LIG3-213ENST00000590630 PRDM15P57071 1507 aaPredicted RBP18.15■□□□□ 0.5
LIG3-213ENST00000590630 WASHC2CQ9Y4E1 1318 aa18.14■□□□□ 0.49
LIG3-213ENST00000590630 NPATQ14207 1427 aa18.14■□□□□ 0.49
LIG3-213ENST00000590630 LMTK3Q96Q04 1460 aa18.14■□□□□ 0.49
LIG3-213ENST00000590630 ABCC3O15438 1527 aa18.13■□□□□ 0.49
LIG3-213ENST00000590630 ANKRD50Q9ULJ7 1429 aa18.12■□□□□ 0.49
LIG3-213ENST00000590630 CEP152O94986 1710 aa18.12■□□□□ 0.49
LIG3-213ENST00000590630 ITGAEP38570 1179 aa18.11■□□□□ 0.49
LIG3-213ENST00000590630 PZPP20742 1482 aa18.09■□□□□ 0.49
LIG3-213ENST00000590630 CAMSAP1Q5T5Y3 1602 aa18.09■□□□□ 0.49
LIG3-213ENST00000590630 UHRF1BP1Q6BDS2 1440 aa18.08■□□□□ 0.49
LIG3-213ENST00000590630 KANK1Q14678 1352 aa18.07■□□□□ 0.48
LIG3-213ENST00000590630 VWDEQ8N2E2 1590 aa18.07■□□□□ 0.48
LIG3-213ENST00000590630 MYO3AQ8NEV4 1616 aa18.05■□□□□ 0.48
LIG3-213ENST00000590630 UNC13BO14795 1591 aa18.05■□□□□ 0.48
LIG3-213ENST00000590630 ZNF142P52746 1687 aaPredicted RBP18.04■□□□□ 0.48
LIG3-213ENST00000590630 GCC2Q8IWJ2 1684 aa18.04■□□□□ 0.48
LIG3-213ENST00000590630 LMTK2Q8IWU2 1503 aa18.03■□□□□ 0.48
LIG3-213ENST00000590630 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.03■□□□□ 0.48
LIG3-213ENST00000590630 CFAP65Q6ZU64 1925 aaKnown RBP18.02■□□□□ 0.48
LIG3-213ENST00000590630 ARHGAP31Q2M1Z3 1444 aa18.02■□□□□ 0.48
LIG3-213ENST00000590630 SPATA31D1Q6ZQQ2 1576 aa18■□□□□ 0.47
LIG3-213ENST00000590630 TNRQ92752 1358 aa18■□□□□ 0.47
LIG3-213ENST00000590630 CEP170BQ9Y4F5 1589 aaPredicted RBP18■□□□□ 0.47
LIG3-213ENST00000590630 EFCAB6Q5THR3 1501 aa17.99■□□□□ 0.47
LIG3-213ENST00000590630 FBXO31Q5XUX0 539 aaPredicted RBP17.99■□□□□ 0.47
LIG3-213ENST00000590630 TET3O43151 1660 aa17.99■□□□□ 0.47
LIG3-213ENST00000590630 HFM1A2PYH4 1435 aa17.98■□□□□ 0.47
LIG3-213ENST00000590630 NAIPQ13075 1403 aa17.98■□□□□ 0.47
LIG3-213ENST00000590630 IQGAP3Q86VI3 1631 aa17.98■□□□□ 0.47
LIG3-213ENST00000590630 HSPA2P54652 639 aa17.98■□□□□ 0.47
LIG3-213ENST00000590630 ERVK-7P63135 1459 aa17.98■□□□□ 0.47
LIG3-213ENST00000590630 A2ML1A8K2U0 1454 aa17.96■□□□□ 0.47
LIG3-213ENST00000590630 NLRP1Q9C000 1473 aa17.96■□□□□ 0.47
LIG3-213ENST00000590630 RPRD2Q5VT52 1461 aaKnown RBP17.95■□□□□ 0.46
LIG3-213ENST00000590630 STRCQ7RTU9 1775 aa17.94■□□□□ 0.46
LIG3-213ENST00000590630 NUP155O75694 1391 aa17.91■□□□□ 0.46
LIG3-213ENST00000590630 E9PCH4 1651 aa17.9■□□□□ 0.46
LIG3-213ENST00000590630 PLA2R1Q13018 1463 aa17.9■□□□□ 0.46
LIG3-213ENST00000590630 UGGT1Q9NYU2 1555 aa17.89■□□□□ 0.45
LIG3-213ENST00000590630 NOS1P29475 1434 aa17.88■□□□□ 0.45
LIG3-213ENST00000590630 SYNMO15061 1565 aa17.87■□□□□ 0.45
LIG3-213ENST00000590630 KDM5AP29375 1690 aaKnown RBP17.87■□□□□ 0.45
LIG3-213ENST00000590630 UBR1Q8IWV7 1749 aa17.86■□□□□ 0.45
LIG3-213ENST00000590630 POLR1AO95602 1720 aaPredicted RBP17.85■□□□□ 0.45
LIG3-213ENST00000590630 DMRT2Q9Y5R5 561 aa17.85■□□□□ 0.45
LIG3-213ENST00000590630 PIK3C2BO00750 1634 aa17.84■□□□□ 0.45
LIG3-213ENST00000590630 THEMISQ8N1K5 641 aaPredicted RBP17.84■□□□□ 0.45
LIG3-213ENST00000590630 PKD2Q13563 968 aa17.82■□□□□ 0.44
LIG3-213ENST00000590630 PTPRTO14522 1441 aa17.81■□□□□ 0.44
LIG3-213ENST00000590630 SPHKAPQ2M3C7 1700 aa17.81■□□□□ 0.44
LIG3-213ENST00000590630 ACIN1Q9UKV3 1341 aaKnown RBP17.81■□□□□ 0.44
LIG3-213ENST00000590630 SLC52A1Q9NWF4 448 aa17.81■□□□□ 0.44
LIG3-213ENST00000590630 SETD5Q9C0A6 1442 aa17.81■□□□□ 0.44
LIG3-213ENST00000590630 TRIM52Q96A61 297 aa17.8■□□□□ 0.44
LIG3-213ENST00000590630 IDI1Q13907 227 aa17.79■□□□□ 0.44
LIG3-213ENST00000590630 ADGRB3O60242 1522 aa17.78■□□□□ 0.44
LIG3-213ENST00000590630 SLIT1O75093 1534 aa17.77■□□□□ 0.44
LIG3-213ENST00000590630 NCKAP5LQ9HCH0 1330 aa17.77■□□□□ 0.44
LIG3-213ENST00000590630 NEURL4Q96JN8 1562 aa17.77■□□□□ 0.44
LIG3-213ENST00000590630 ANKLE2Q86XL3 938 aa17.76■□□□□ 0.43
LIG3-213ENST00000590630 STAG3Q9UJ98 1225 aa17.76■□□□□ 0.43
LIG3-213ENST00000590630 MYO5BQ9ULV0 1848 aa17.76■□□□□ 0.43
LIG3-213ENST00000590630 ARHGAP23Q9P227 1491 aa17.75■□□□□ 0.43
LIG3-213ENST00000590630 SLC4A1APQ9BWU0 796 aaKnown RBP17.75■□□□□ 0.43
LIG3-213ENST00000590630 TMEM131LA2VDJ0 1609 aa17.74■□□□□ 0.43
LIG3-213ENST00000590630 RAB3GAP2Q9H2M9 1393 aa17.74■□□□□ 0.43
LIG3-213ENST00000590630 MED14O60244 1454 aa17.74■□□□□ 0.43
LIG3-213ENST00000590630 TRPM2O94759 1503 aa17.73■□□□□ 0.43
LIG3-213ENST00000590630 TMEM2Q9UHN6 1383 aa17.73■□□□□ 0.43
LIG3-213ENST00000590630 IQGAP1P46940 1657 aa17.73■□□□□ 0.43
LIG3-213ENST00000590630 SCAF11Q99590 1463 aaKnown RBP17.72■□□□□ 0.43
LIG3-213ENST00000590630 NPHP4O75161 1426 aaPredicted RBP17.7■□□□□ 0.42
LIG3-213ENST00000590630 EID1Q9Y6B2 187 aa17.69■□□□□ 0.42
LIG3-213ENST00000590630 CLTCL1P53675 1640 aa17.69■□□□□ 0.42
LIG3-213ENST00000590630 KIF1BO60333 1816 aa17.68■□□□□ 0.42
LIG3-213ENST00000590630 HRCP23327 699 aa17.68■□□□□ 0.42
LIG3-213ENST00000590630 MPHOSPH9Q99550 1183 aa17.68■□□□□ 0.42
LIG3-213ENST00000590630 TXNDC2Q86VQ3 553 aa17.67■□□□□ 0.42
LIG3-213ENST00000590630 LTKP29376 864 aa17.66■□□□□ 0.42
LIG3-213ENST00000590630 ZFYVE9O95405 1425 aa17.65■□□□□ 0.42
LIG3-213ENST00000590630 CHGAP10645 457 aaKnown RBP17.65■□□□□ 0.42
LIG3-213ENST00000590630 LTBP4Q8N2S1 1624 aa17.64■□□□□ 0.41
LIG3-213ENST00000590630 HDGFP51858 240 aaKnown RBP17.63■□□□□ 0.41
LIG3-213ENST00000590630 RIMS2Q9UQ26 1411 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms