RNA–Protein interactions for RNA: ENST00000590619.1

DNMT1-222, Transcript of DNA methyltransferase 1, human

TSL 1 (best)

Gene DNMT1, Length 231 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-222	ENST00000590619	KIF3B	O15066	747 aa		10.82	□□□□□ -0.68
DNMT1-222	ENST00000590619	WASHC2C	Q9Y4E1	1318 aa		10.82	□□□□□ -0.68
DNMT1-222	ENST00000590619	POLR1A	O95602	1720 aa	Predicted RBP	10.81	□□□□□ -0.68
DNMT1-222	ENST00000590619	FAM135A	Q9P2D6	1515 aa		10.8	□□□□□ -0.68
DNMT1-222	ENST00000590619	LTK	P29376	864 aa		10.8	□□□□□ -0.68
DNMT1-222	ENST00000590619	ZNF772	Q68DY9	489 aa	Predicted RBP	10.8	□□□□□ -0.68
DNMT1-222	ENST00000590619	EHMT2	Q96KQ7	1210 aa		10.8	□□□□□ -0.68
DNMT1-222	ENST00000590619	CFDP1	Q9UEE9	299 aa	Predicted RBP	10.8	□□□□□ -0.68
DNMT1-222	ENST00000590619	PLXNC1	O60486	1568 aa		10.8	□□□□□ -0.68
DNMT1-222	ENST00000590619	RNF17	Q9BXT8	1623 aa	Known RBP	10.8	□□□□□ -0.68
DNMT1-222	ENST00000590619	DHX29	Q7Z478	1369 aa	Known RBP	10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	UGGT1	Q9NYU2	1555 aa		10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	KIAA1107	Q9UPP5	1409 aa		10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	UBTF	P17480	764 aa	Known RBP	10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	RXRB	P28702	533 aa		10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	RBM33	Q96EV2	1170 aa	Known RBP	10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	DEPDC5	O75140	1603 aa		10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	ATP7A	Q04656	1500 aa		10.79	□□□□□ -0.68
DNMT1-222	ENST00000590619	PREX2	Q70Z35	1606 aa		10.78	□□□□□ -0.68
DNMT1-222	ENST00000590619	TXNDC2	Q86VQ3	553 aa		10.78	□□□□□ -0.68
DNMT1-222	ENST00000590619	PZP	P20742	1482 aa		10.78	□□□□□ -0.68
DNMT1-222	ENST00000590619	NLRP1	Q9C000	1473 aa		10.78	□□□□□ -0.68
DNMT1-222	ENST00000590619	GPATCH8	Q9UKJ3	1502 aa	Known RBP	10.78	□□□□□ -0.68
DNMT1-222	ENST00000590619	ARHGAP35	Q9NRY4	1499 aa		10.77	□□□□□ -0.69
DNMT1-222	ENST00000590619	SYCP2	Q9BX26	1530 aa		10.77	□□□□□ -0.69
DNMT1-222	ENST00000590619	ZNF644	Q9H582	1327 aa	Predicted RBP	10.77	□□□□□ -0.69
DNMT1-222	ENST00000590619	SLAIN2	Q9P270	581 aa		10.76	□□□□□ -0.69
DNMT1-222	ENST00000590619	TMEM94	Q12767	1356 aa		10.76	□□□□□ -0.69
DNMT1-222	ENST00000590619	JCAD	Q9P266	1359 aa		10.76	□□□□□ -0.69
DNMT1-222	ENST00000590619	IQGAP1	P46940	1657 aa		10.76	□□□□□ -0.69
DNMT1-222	ENST00000590619	PROSER2	Q86WR7	435 aa	Predicted RBP	10.75	□□□□□ -0.69
DNMT1-222	ENST00000590619	KCNA6	P17658	529 aa		10.74	□□□□□ -0.69
DNMT1-222	ENST00000590619	MEX3C	Q5U5Q3	659 aa	Known RBP	10.74	□□□□□ -0.69
DNMT1-222	ENST00000590619	EEA1	Q15075	1411 aa		10.73	□□□□□ -0.69
DNMT1-222	ENST00000590619	SYNM	O15061	1565 aa		10.73	□□□□□ -0.69
DNMT1-222	ENST00000590619	INO80	Q9ULG1	1556 aa	Predicted RBP	10.72	□□□□□ -0.69
DNMT1-222	ENST00000590619	CDC42BPA	Q5VT25	1732 aa		10.72	□□□□□ -0.69
DNMT1-222	ENST00000590619	RTEL1-TNFRSF6B	F6WH68	1400 aa		10.71	□□□□□ -0.69
DNMT1-222	ENST00000590619	SPATA31A6	Q5VVP1	1343 aa		10.71	□□□□□ -0.69
DNMT1-222	ENST00000590619	XIRP1	Q702N8	1843 aa	Known RBP	10.71	□□□□□ -0.69
DNMT1-222	ENST00000590619	PLEKHH2	Q8IVE3	1493 aa		10.71	□□□□□ -0.69
DNMT1-222	ENST00000590619	KDM5D	Q9BY66	1539 aa		10.71	□□□□□ -0.69
DNMT1-222	ENST00000590619	LRRIQ1	Q96JM4	1722 aa		10.7	□□□□□ -0.7
DNMT1-222	ENST00000590619	ZRANB1	Q9UGI0	708 aa		10.7	□□□□□ -0.7
DNMT1-222	ENST00000590619	EID1	Q9Y6B2	187 aa		10.7	□□□□□ -0.7
DNMT1-222	ENST00000590619	LRP6	O75581	1613 aa		10.69	□□□□□ -0.7
DNMT1-222	ENST00000590619	SCAF11	Q99590	1463 aa	Known RBP	10.69	□□□□□ -0.7
DNMT1-222	ENST00000590619	MBD5	Q9P267	1494 aa		10.69	□□□□□ -0.7
DNMT1-222	ENST00000590619	SLC26A8	Q96RN1	970 aa		10.69	□□□□□ -0.7
DNMT1-222	ENST00000590619	ROBO1	Q9Y6N7	1651 aa		10.69	□□□□□ -0.7
DNMT1-222	ENST00000590619	CASKIN1	Q8WXD9	1431 aa		10.68	□□□□□ -0.7
DNMT1-222	ENST00000590619	CCNB3	Q8WWL7	1395 aa		10.68	□□□□□ -0.7
DNMT1-222	ENST00000590619	ZC3H13	Q5T200	1668 aa	Known RBP	10.68	□□□□□ -0.7
DNMT1-222	ENST00000590619	QTRT2	Q9H974	415 aa	Known RBP	10.67	□□□□□ -0.7
DNMT1-222	ENST00000590619	NCOA2	Q15596	1464 aa		10.67	□□□□□ -0.7
DNMT1-222	ENST00000590619	ADGB	Q8N7X0	1667 aa		10.66	□□□□□ -0.7
DNMT1-222	ENST00000590619	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.66	□□□□□ -0.7
DNMT1-222	ENST00000590619	NUTM2E	B1AL46	878 aa	Predicted RBP	10.66	□□□□□ -0.7
DNMT1-222	ENST00000590619	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.66	□□□□□ -0.7
DNMT1-222	ENST00000590619	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.66	□□□□□ -0.7
DNMT1-222	ENST00000590619	CCDC18	Q5T9S5	1454 aa		10.66	□□□□□ -0.7
DNMT1-222	ENST00000590619	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.66	□□□□□ -0.7
DNMT1-222	ENST00000590619	RBM6	P78332	1123 aa	Known RBP	10.65	□□□□□ -0.7
DNMT1-222	ENST00000590619	ARHGAP23	Q9P227	1491 aa		10.65	□□□□□ -0.7
DNMT1-222	ENST00000590619	AFF2	P51816	1311 aa		10.64	□□□□□ -0.71
DNMT1-222	ENST00000590619	RSPH4A	Q5TD94	716 aa		10.64	□□□□□ -0.71
DNMT1-222	ENST00000590619	MSH6	P52701	1360 aa		10.64	□□□□□ -0.71
DNMT1-222	ENST00000590619	MAP3K1	Q13233	1512 aa		10.63	□□□□□ -0.71
DNMT1-222	ENST00000590619	LRRC9	Q6ZRR7	1453 aa		10.63	□□□□□ -0.71
DNMT1-222	ENST00000590619	FOXD1	Q16676	465 aa		10.63	□□□□□ -0.71
DNMT1-222	ENST00000590619	FGD6	Q6ZV73	1430 aa		10.63	□□□□□ -0.71
DNMT1-222	ENST00000590619	ERVK-7	P63135	1459 aa		10.62	□□□□□ -0.71
DNMT1-222	ENST00000590619	PHLPP1	O60346	1717 aa		10.62	□□□□□ -0.71
DNMT1-222	ENST00000590619	SLIT1	O75093	1534 aa		10.62	□□□□□ -0.71
DNMT1-222	ENST00000590619	TMEM2	Q9UHN6	1383 aa		10.62	□□□□□ -0.71
DNMT1-222	ENST00000590619	STAG3	Q9UJ98	1225 aa		10.61	□□□□□ -0.71
DNMT1-222	ENST00000590619	SETBP1	Q9Y6X0	1596 aa		10.6	□□□□□ -0.71
DNMT1-222	ENST00000590619	RGS12	O14924	1447 aa		10.6	□□□□□ -0.71
DNMT1-222	ENST00000590619	PRDM15	P57071	1507 aa	Predicted RBP	10.6	□□□□□ -0.71
DNMT1-222	ENST00000590619	TSPY4	P0CV99	314 aa		10.6	□□□□□ -0.71
DNMT1-222	ENST00000590619	TSPY10	P0CW01	314 aa		10.6	□□□□□ -0.71
DNMT1-222	ENST00000590619	IDI1	Q13907	227 aa		10.6	□□□□□ -0.71
DNMT1-222	ENST00000590619	COL16A1	Q07092	1604 aa	Predicted RBP	10.59	□□□□□ -0.71
DNMT1-222	ENST00000590619	UBR1	Q8IWV7	1749 aa		10.58	□□□□□ -0.72
DNMT1-222	ENST00000590619	BCAN	Q96GW7	911 aa		10.58	□□□□□ -0.72
DNMT1-222	ENST00000590619	C8orf37	Q96NL8	207 aa		10.58	□□□□□ -0.72
DNMT1-222	ENST00000590619	ABCC3	O15438	1527 aa		10.58	□□□□□ -0.72
DNMT1-222	ENST00000590619	TET3	O43151	1660 aa		10.57	□□□□□ -0.72
DNMT1-222	ENST00000590619	NGLY1	Q96IV0	654 aa		10.57	□□□□□ -0.72
DNMT1-222	ENST00000590619	MTUS2	Q5JR59	1369 aa		10.56	□□□□□ -0.72
DNMT1-222	ENST00000590619	ATAD2	Q6PL18	1390 aa		10.56	□□□□□ -0.72
DNMT1-222	ENST00000590619	BRINP3	Q76B58	766 aa		10.56	□□□□□ -0.72
DNMT1-222	ENST00000590619	CADPS2	Q86UW7	1296 aa		10.56	□□□□□ -0.72
DNMT1-222	ENST00000590619	CCDC125	Q86Z20	511 aa		10.56	□□□□□ -0.72
DNMT1-222	ENST00000590619	C19orf44	Q9H6X5	657 aa		10.56	□□□□□ -0.72
DNMT1-222	ENST00000590619	CFAP65	Q6ZU64	1925 aa	Known RBP	10.56	□□□□□ -0.72
DNMT1-222	ENST00000590619	ATF3	P18847	181 aa		10.55	□□□□□ -0.72
DNMT1-222	ENST00000590619	C14orf37	Q86TY3	774 aa		10.54	□□□□□ -0.72
DNMT1-222	ENST00000590619	CCDC141	Q6ZP82	1450 aa		10.54	□□□□□ -0.72
DNMT1-222	ENST00000590619	LRRC59	Q96AG4	307 aa	Known RBP	10.53	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms