RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 POLR1AO95602 1720 aaPredicted RBP28.12■■■□□ 2.09
RETREG3-210ENST00000590541 CPS1P31327 1500 aa28.11■■■□□ 2.09
RETREG3-210ENST00000590541 TNRQ92752 1358 aa28.11■■■□□ 2.09
RETREG3-210ENST00000590541 SHANK2Q9UPX8 1470 aa28.09■■■□□ 2.09
RETREG3-210ENST00000590541 MED1Q15648 1581 aaPredicted RBP28.09■■■□□ 2.09
RETREG3-210ENST00000590541 PIP4K2BP78356 416 aa28.09■■■□□ 2.09
RETREG3-210ENST00000590541 SCAF1Q9H7N4 1312 aaKnown RBP28.09■■■□□ 2.09
RETREG3-210ENST00000590541 TOM1O60784 492 aa28.07■■■□□ 2.08
RETREG3-210ENST00000590541 PZPP20742 1482 aa28.07■■■□□ 2.08
RETREG3-210ENST00000590541 KIF3BO15066 747 aa28.06■■■□□ 2.08
RETREG3-210ENST00000590541 EHBP1L1Q8N3D4 1523 aa28.06■■■□□ 2.08
RETREG3-210ENST00000590541 KDM5DQ9BY66 1539 aa28.05■■■□□ 2.08
RETREG3-210ENST00000590541 CEP162Q5TB80 1403 aa28.03■■■□□ 2.08
RETREG3-210ENST00000590541 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.03■■■□□ 2.08
RETREG3-210ENST00000590541 FAM135AQ9P2D6 1515 aa28.02■■■□□ 2.08
RETREG3-210ENST00000590541 VWDEQ8N2E2 1590 aa28.02■■■□□ 2.08
RETREG3-210ENST00000590541 ANKLE2Q86XL3 938 aa28.01■■■□□ 2.07
RETREG3-210ENST00000590541 CCDC141Q6ZP82 1450 aa28■■■□□ 2.07
RETREG3-210ENST00000590541 WASHC2CQ9Y4E1 1318 aa27.99■■■□□ 2.07
RETREG3-210ENST00000590541 MIA2Q96PC5 1412 aa27.99■■■□□ 2.07
RETREG3-210ENST00000590541 ALKQ9UM73 1620 aa27.98■■■□□ 2.07
RETREG3-210ENST00000590541 MED14O60244 1454 aa27.97■■■□□ 2.07
RETREG3-210ENST00000590541 THEMISQ8N1K5 641 aaPredicted RBP27.97■■■□□ 2.07
RETREG3-210ENST00000590541 NLRP1Q9C000 1473 aa27.96■■■□□ 2.07
RETREG3-210ENST00000590541 UGGT1Q9NYU2 1555 aa27.95■■■□□ 2.07
RETREG3-210ENST00000590541 NPHP4O75161 1426 aaPredicted RBP27.95■■■□□ 2.07
RETREG3-210ENST00000590541 CAMSAP2Q08AD1 1489 aa27.95■■■□□ 2.06
RETREG3-210ENST00000590541 DEPDC5O75140 1603 aa27.94■■■□□ 2.06
RETREG3-210ENST00000590541 RSPH4AQ5TD94 716 aa27.92■■■□□ 2.06
RETREG3-210ENST00000590541 NCOA2Q15596 1464 aa27.9■■■□□ 2.06
RETREG3-210ENST00000590541 IQGAP1P46940 1657 aa27.87■■■□□ 2.05
RETREG3-210ENST00000590541 STRCP1A6NGW2 1772 aa27.86■■■□□ 2.05
RETREG3-210ENST00000590541 ARHGEF5Q12774 1597 aa27.85■■■□□ 2.05
RETREG3-210ENST00000590541 PHF23Q9BUL5 403 aaPredicted RBP27.84■■■□□ 2.05
RETREG3-210ENST00000590541 LRRC7Q96NW7 1537 aa27.83■■■□□ 2.05
RETREG3-210ENST00000590541 TSPY4P0CV99 314 aa27.81■■■□□ 2.04
RETREG3-210ENST00000590541 TSPY10P0CW01 314 aa27.81■■■□□ 2.04
RETREG3-210ENST00000590541 ABCC3O15438 1527 aa27.81■■■□□ 2.04
RETREG3-210ENST00000590541 RNF17Q9BXT8 1623 aaKnown RBP27.81■■■□□ 2.04
RETREG3-210ENST00000590541 ZC3H13Q5T200 1668 aaKnown RBP27.78■■■□□ 2.04
RETREG3-210ENST00000590541 SYNMO15061 1565 aa27.77■■■□□ 2.04
RETREG3-210ENST00000590541 ERVK-7P63135 1459 aa27.77■■■□□ 2.04
RETREG3-210ENST00000590541 SENP3Q9H4L4 574 aaPredicted RBP27.77■■■□□ 2.04
RETREG3-210ENST00000590541 MAST1Q9Y2H9 1570 aa27.73■■■□□ 2.03
RETREG3-210ENST00000590541 MROH1Q8NDA8 1641 aa27.73■■■□□ 2.03
RETREG3-210ENST00000590541 EIF2AK4Q9P2K8 1649 aaKnown RBP27.71■■■□□ 2.03
RETREG3-210ENST00000590541 UBR1Q8IWV7 1749 aa27.7■■■□□ 2.03
RETREG3-210ENST00000590541 SCAF11Q99590 1463 aaKnown RBP27.67■■■□□ 2.02
RETREG3-210ENST00000590541 CEP152O94986 1710 aa27.67■■■□□ 2.02
RETREG3-210ENST00000590541 ARHGAP23Q9P227 1491 aa27.65■■■□□ 2.02
RETREG3-210ENST00000590541 LTKP29376 864 aa27.65■■■□□ 2.02
RETREG3-210ENST00000590541 RGS17Q9UGC6 210 aaPredicted RBP27.65■■■□□ 2.02
RETREG3-210ENST00000590541 LRRC9Q6ZRR7 1453 aa27.64■■■□□ 2.01
RETREG3-210ENST00000590541 SLIT1O75093 1534 aa27.63■■■□□ 2.01
RETREG3-210ENST00000590541 CFAP65Q6ZU64 1925 aaKnown RBP27.63■■■□□ 2.01
RETREG3-210ENST00000590541 XIRP1Q702N8 1843 aaKnown RBP27.62■■■□□ 2.01
RETREG3-210ENST00000590541 TXNDC2Q86VQ3 553 aa27.61■■■□□ 2.01
RETREG3-210ENST00000590541 DUOX2Q9NRD8 1548 aa27.58■■■□□ 2.01
RETREG3-210ENST00000590541 ARHGAP31Q2M1Z3 1444 aa27.58■■■□□ 2
RETREG3-210ENST00000590541 PRDM15P57071 1507 aaPredicted RBP27.54■■■□□ 2
RETREG3-210ENST00000590541 MYOM3Q5VTT5 1437 aa27.53■■■□□ 2
RETREG3-210ENST00000590541 KANK4Q5T7N3 995 aaPredicted RBP27.53■■■□□ 2
RETREG3-210ENST00000590541 FAM135BQ49AJ0 1406 aa27.52■■■□□ 2
RETREG3-210ENST00000590541 VPS8Q8N3P4 1428 aa27.52■■■□□ 2
RETREG3-210ENST00000590541 EID1Q9Y6B2 187 aa27.52■■■□□ 2
RETREG3-210ENST00000590541 PIK3C2BO00750 1634 aa27.51■■□□□ 1.99
RETREG3-210ENST00000590541 TMEM2Q9UHN6 1383 aa27.5■■□□□ 1.99
RETREG3-210ENST00000590541 KIF15Q9NS87 1388 aa27.48■■□□□ 1.99
RETREG3-210ENST00000590541 ERBINQ96RT1 1412 aa27.48■■□□□ 1.99
RETREG3-210ENST00000590541 TMEM94Q12767 1356 aa27.47■■□□□ 1.99
RETREG3-210ENST00000590541 MAP3K1Q13233 1512 aa27.46■■□□□ 1.99
RETREG3-210ENST00000590541 POTEAQ6S8J7 498 aa27.45■■□□□ 1.98
RETREG3-210ENST00000590541 RRP7BPQ9NSQ0 103 aa27.44■■□□□ 1.98
RETREG3-210ENST00000590541 ABCC5O15440 1437 aa27.43■■□□□ 1.98
RETREG3-210ENST00000590541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.43■■□□□ 1.98
RETREG3-210ENST00000590541 KCNA6P17658 529 aa27.42■■□□□ 1.98
RETREG3-210ENST00000590541 STAG3Q9UJ98 1225 aa27.42■■□□□ 1.98
RETREG3-210ENST00000590541 CROCC2H7BZ55 1655 aa27.42■■□□□ 1.98
RETREG3-210ENST00000590541 EFCAB6Q5THR3 1501 aa27.41■■□□□ 1.98
RETREG3-210ENST00000590541 TET3O43151 1660 aa27.41■■□□□ 1.98
RETREG3-210ENST00000590541 KDM5AP29375 1690 aaKnown RBP27.41■■□□□ 1.98
RETREG3-210ENST00000590541 ROBO1Q9Y6N7 1651 aa27.4■■□□□ 1.98
RETREG3-210ENST00000590541 IDI1Q13907 227 aa27.4■■□□□ 1.98
RETREG3-210ENST00000590541 RBM33Q96EV2 1170 aaKnown RBP27.38■■□□□ 1.97
RETREG3-210ENST00000590541 SLC26A8Q96RN1 970 aa27.38■■□□□ 1.97
RETREG3-210ENST00000590541 PROSER2Q86WR7 435 aaPredicted RBP27.37■■□□□ 1.97
RETREG3-210ENST00000590541 LMTK2Q8IWU2 1503 aa27.36■■□□□ 1.97
RETREG3-210ENST00000590541 KANK1Q14678 1352 aa27.36■■□□□ 1.97
RETREG3-210ENST00000590541 PTPN23Q9H3S7 1636 aa27.34■■□□□ 1.97
RETREG3-210ENST00000590541 DAPK1P53355 1430 aa27.33■■□□□ 1.97
RETREG3-210ENST00000590541 NWD1Q149M9 1564 aa27.32■■□□□ 1.96
RETREG3-210ENST00000590541 NOS1P29475 1434 aa27.32■■□□□ 1.96
RETREG3-210ENST00000590541 NKTRP30414 1462 aaKnown RBP27.32■■□□□ 1.96
RETREG3-210ENST00000590541 LOC105371045A0A1W2PR82 267 aa27.29■■□□□ 1.96
RETREG3-210ENST00000590541 ADGRB3O60242 1522 aa27.29■■□□□ 1.96
RETREG3-210ENST00000590541 MSH6P52701 1360 aa27.26■■□□□ 1.95
RETREG3-210ENST00000590541 ANKRD30AQ9BXX3 1397 aa27.24■■□□□ 1.95
RETREG3-210ENST00000590541 SLAIN2Q9P270 581 aa27.24■■□□□ 1.95
RETREG3-210ENST00000590541 CHIC2Q9UKJ5 165 aa27.24■■□□□ 1.95
RETREG3-210ENST00000590541 PHLPP1O60346 1717 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms