RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 RNF17Q9BXT8 1623 aaKnown RBP20.32■□□□□ 0.84
VMP1-210ENST00000589823 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.31■□□□□ 0.848e-7■□□□□ 10.1
VMP1-210ENST00000589823 ESF1Q9H501 851 aaKnown RBP20.3■□□□□ 0.84
VMP1-210ENST00000589823 PPP6R1Q9UPN7 881 aa20.3■□□□□ 0.84
VMP1-210ENST00000589823 KANK1Q14678 1352 aa20.3■□□□□ 0.84
VMP1-210ENST00000589823 RAB3GAP2Q9H2M9 1393 aa20.3■□□□□ 0.84
VMP1-210ENST00000589823 ACIN1Q9UKV3 1341 aaKnown RBP20.29■□□□□ 0.84
VMP1-210ENST00000589823 DEPDC5O75140 1603 aa20.28■□□□□ 0.84
VMP1-210ENST00000589823 PRDM15P57071 1507 aaPredicted RBP20.27■□□□□ 0.84
VMP1-210ENST00000589823 UNC13BO14795 1591 aa20.27■□□□□ 0.84
VMP1-210ENST00000589823 TRIM52Q96A61 297 aa20.27■□□□□ 0.84
VMP1-210ENST00000589823 WASHC2CQ9Y4E1 1318 aa20.27■□□□□ 0.83
VMP1-210ENST00000589823 MROH1Q8NDA8 1641 aa20.26■□□□□ 0.83
VMP1-210ENST00000589823 NUP155O75694 1391 aa20.25■□□□□ 0.83
VMP1-210ENST00000589823 HRCP23327 699 aa20.25■□□□□ 0.83
VMP1-210ENST00000589823 FAM135AQ9P2D6 1515 aa20.25■□□□□ 0.83
VMP1-210ENST00000589823 KDM5DQ9BY66 1539 aa20.24■□□□□ 0.83
VMP1-210ENST00000589823 CNTLNQ9NXG0 1405 aa20.23■□□□□ 0.83
VMP1-210ENST00000589823 ADAMTSL3P82987 1691 aa20.22■□□□□ 0.83
VMP1-210ENST00000589823 FER1L4A9Z1Z3 1794 aa20.21■□□□□ 0.83
VMP1-210ENST00000589823 ZC3H13Q5T200 1668 aaKnown RBP20.21■□□□□ 0.83
VMP1-210ENST00000589823 VWDEQ8N2E2 1590 aa20.21■□□□□ 0.83
VMP1-210ENST00000589823 MADDQ8WXG6 1647 aa20.2■□□□□ 0.82
VMP1-210ENST00000589823 ABCC3O15438 1527 aa20.2■□□□□ 0.82
VMP1-210ENST00000589823 IQGAP3Q86VI3 1631 aa20.19■□□□□ 0.82
VMP1-210ENST00000589823 CLTCQ00610 1675 aaKnown RBP20.19■□□□□ 0.82
VMP1-210ENST00000589823 LMTK2Q8IWU2 1503 aa20.17■□□□□ 0.82
VMP1-210ENST00000589823 RIMS1Q86UR5 1692 aaKnown RBP20.17■□□□□ 0.82
VMP1-210ENST00000589823 CEP152O94986 1710 aa20.17■□□□□ 0.82
VMP1-210ENST00000589823 KDM4FA0A1W2PPD8 638 aa20.17■□□□□ 0.82
VMP1-210ENST00000589823 SLC4A1APQ9BWU0 796 aaKnown RBP20.16■□□□□ 0.82
VMP1-210ENST00000589823 ZMYM3Q14202 1370 aa20.15■□□□□ 0.82
VMP1-210ENST00000589823 MROH2AA6NES4 1674 aa20.15■□□□□ 0.82
VMP1-210ENST00000589823 TET3O43151 1660 aa20.13■□□□□ 0.81
VMP1-210ENST00000589823 CAMSAP1Q5T5Y3 1602 aa20.13■□□□□ 0.81
VMP1-210ENST00000589823 PZPP20742 1482 aa20.13■□□□□ 0.81
VMP1-210ENST00000589823 MPHOSPH9Q99550 1183 aa20.12■□□□□ 0.81
VMP1-210ENST00000589823 EFCAB6Q5THR3 1501 aa20.12■□□□□ 0.81
VMP1-210ENST00000589823 PTPRMP28827 1452 aa20.11■□□□□ 0.81
VMP1-210ENST00000589823 ARHGAP31Q2M1Z3 1444 aa20.1■□□□□ 0.81
VMP1-210ENST00000589823 PLPPR3Q6T4P5 718 aa20.1■□□□□ 0.81
VMP1-210ENST00000589823 CEBPAP49715 358 aaPredicted RBP20.09■□□□□ 0.81
VMP1-210ENST00000589823 PKD2Q13563 968 aa20.09■□□□□ 0.81
VMP1-210ENST00000589823 C3P01024 1663 aa20.08■□□□□ 0.81
VMP1-210ENST00000589823 RPRD2Q5VT52 1461 aaKnown RBP20.08■□□□□ 0.81
VMP1-210ENST00000589823 NPATQ14207 1427 aa20.08■□□□□ 0.8
VMP1-210ENST00000589823 E9PCH4 1651 aa20.05■□□□□ 0.8
VMP1-210ENST00000589823 FBXO31Q5XUX0 539 aaPredicted RBP20.04■□□□□ 0.8
VMP1-210ENST00000589823 ERVK-7P63135 1459 aa20.03■□□□□ 0.8
VMP1-210ENST00000589823 FOXD1Q16676 465 aa20.01■□□□□ 0.79
VMP1-210ENST00000589823 PREX1Q8TCU6 1659 aa20■□□□□ 0.79
VMP1-210ENST00000589823 SPATA31D1Q6ZQQ2 1576 aa20■□□□□ 0.79
VMP1-210ENST00000589823 DHX57Q6P158 1386 aaKnown RBP19.99■□□□□ 0.79
VMP1-210ENST00000589823 TNRQ92752 1358 aa19.99■□□□□ 0.79
VMP1-210ENST00000589823 NOS1P29475 1434 aa19.99■□□□□ 0.79
VMP1-210ENST00000589823 CFAP65Q6ZU64 1925 aaKnown RBP19.98■□□□□ 0.79
VMP1-210ENST00000589823 PTPRTO14522 1441 aa19.97■□□□□ 0.79
VMP1-210ENST00000589823 SPHKAPQ2M3C7 1700 aa19.96■□□□□ 0.79
VMP1-210ENST00000589823 SYNMO15061 1565 aa19.94■□□□□ 0.78
VMP1-210ENST00000589823 TRPM2O94759 1503 aa19.93■□□□□ 0.78
VMP1-210ENST00000589823 SLC52A1Q9NWF4 448 aa19.93■□□□□ 0.78
VMP1-210ENST00000589823 ANKRD30BQ9BXX2 1392 aa19.92■□□□□ 0.78
VMP1-210ENST00000589823 PLA2R1Q13018 1463 aa19.92■□□□□ 0.78
VMP1-210ENST00000589823 NLRP1Q9C000 1473 aa19.92■□□□□ 0.78
VMP1-210ENST00000589823 UHRF1BP1Q6BDS2 1440 aa19.91■□□□□ 0.78
VMP1-210ENST00000589823 SETD1BQ9UPS6 1966 aaKnown RBP19.9■□□□□ 0.78
VMP1-210ENST00000589823 CCDC144AA2RUR9 1427 aa19.9■□□□□ 0.78
VMP1-210ENST00000589823 IDI1Q13907 227 aa19.89■□□□□ 0.77
VMP1-210ENST00000589823 MYO3AQ8NEV4 1616 aa19.89■□□□□ 0.77
VMP1-210ENST00000589823 UGGT1Q9NYU2 1555 aa19.88■□□□□ 0.77
VMP1-210ENST00000589823 CCER1Q8TC90 406 aaPredicted RBP19.88■□□□□ 0.77
VMP1-210ENST00000589823 STAG3Q9UJ98 1225 aa19.88■□□□□ 0.77
VMP1-210ENST00000589823 PIK3C2BO00750 1634 aa19.87■□□□□ 0.77
VMP1-210ENST00000589823 CLTCL1P53675 1640 aa19.87■□□□□ 0.77
VMP1-210ENST00000589823 A2ML1A8K2U0 1454 aa19.86■□□□□ 0.77
VMP1-210ENST00000589823 CHGAP10645 457 aaKnown RBP19.86■□□□□ 0.77
VMP1-210ENST00000589823 CEP170BQ9Y4F5 1589 aaPredicted RBP19.84■□□□□ 0.77
VMP1-210ENST00000589823 ZNF142P52746 1687 aaPredicted RBP19.83■□□□□ 0.76
VMP1-210ENST00000589823 ADGRB3O60242 1522 aa19.81■□□□□ 0.76
VMP1-210ENST00000589823 CLSPNQ9HAW4 1339 aa19.81■□□□□ 0.76
VMP1-210ENST00000589823 THEMISQ8N1K5 641 aaPredicted RBP19.81■□□□□ 0.76
VMP1-210ENST00000589823 KIF1BO60333 1816 aa19.79■□□□□ 0.76
VMP1-210ENST00000589823 KDM5AP29375 1690 aaKnown RBP19.78■□□□□ 0.76
VMP1-210ENST00000589823 TMEM131LA2VDJ0 1609 aa19.78■□□□□ 0.76
VMP1-210ENST00000589823 NEUROD1Q13562 356 aa19.78■□□□□ 0.76
VMP1-210ENST00000589823 ZNF326Q5BKZ1 582 aaKnown RBP19.78■□□□□ 0.76
VMP1-210ENST00000589823 SIN3AQ96ST3 1273 aa19.78■□□□□ 0.76
VMP1-210ENST00000589823 UBR1Q8IWV7 1749 aa19.78■□□□□ 0.76
VMP1-210ENST00000589823 LMTK3Q96Q04 1460 aa19.78■□□□□ 0.76
VMP1-210ENST00000589823 RGL3Q3MIN7 710 aa19.75■□□□□ 0.75
VMP1-210ENST00000589823 SPATA31E1Q6ZUB1 1445 aa19.74■□□□□ 0.75
VMP1-210ENST00000589823 NEURL4Q96JN8 1562 aa19.74■□□□□ 0.75
VMP1-210ENST00000589823 TMEM2Q9UHN6 1383 aa19.72■□□□□ 0.75
VMP1-210ENST00000589823 HDGFP51858 240 aaKnown RBP19.72■□□□□ 0.75
VMP1-210ENST00000589823 HSPA2P54652 639 aa19.72■□□□□ 0.75
VMP1-210ENST00000589823 RPGRIP1LQ68CZ1 1315 aa19.72■□□□□ 0.75
VMP1-210ENST00000589823 MYO5BQ9ULV0 1848 aa19.72■□□□□ 0.75
VMP1-210ENST00000589823 EID1Q9Y6B2 187 aa19.71■□□□□ 0.75
VMP1-210ENST00000589823 RIMS2Q9UQ26 1411 aa19.7■□□□□ 0.74
VMP1-210ENST00000589823 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms