RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 RTN4Q9NQC3 1192 aaKnown RBP15.63■□□□□ 0.09
VPS4B-204ENST00000589604 MROH1Q8NDA8 1641 aa15.62■□□□□ 0.09
VPS4B-204ENST00000589604 SETD5Q9C0A6 1442 aa15.62■□□□□ 0.09
VPS4B-204ENST00000589604 MADDQ8WXG6 1647 aa15.62■□□□□ 0.09
VPS4B-204ENST00000589604 KIF3BO15066 747 aa15.61■□□□□ 0.09
VPS4B-204ENST00000589604 HRCP23327 699 aa15.61■□□□□ 0.09
VPS4B-204ENST00000589604 EIF2AK4Q9P2K8 1649 aaKnown RBP15.61■□□□□ 0.09
VPS4B-204ENST00000589604 NAIPQ13075 1403 aa15.61■□□□□ 0.09
VPS4B-204ENST00000589604 ERBINQ96RT1 1412 aa15.61■□□□□ 0.09
VPS4B-204ENST00000589604 RAB3GAP2Q9H2M9 1393 aa15.61■□□□□ 0.09
VPS4B-204ENST00000589604 HFM1A2PYH4 1435 aa15.6■□□□□ 0.09
VPS4B-204ENST00000589604 RNF17Q9BXT8 1623 aaKnown RBP15.6■□□□□ 0.09
VPS4B-204ENST00000589604 GCC2Q8IWJ2 1684 aa15.6■□□□□ 0.09
VPS4B-204ENST00000589604 ANKRD50Q9ULJ7 1429 aa15.6■□□□□ 0.09
VPS4B-204ENST00000589604 GGT6Q6P531 493 aa15.58■□□□□ 0.08
VPS4B-204ENST00000589604 DEPDC5O75140 1603 aa15.58■□□□□ 0.08
VPS4B-204ENST00000589604 AMER1Q5JTC6 1135 aaPredicted RBP15.57■□□□□ 0.08
VPS4B-204ENST00000589604 FER1L4A9Z1Z3 1794 aa15.57■□□□□ 0.08
VPS4B-204ENST00000589604 RIMS1Q86UR5 1692 aaKnown RBP15.56■□□□□ 0.08
VPS4B-204ENST00000589604 PRDM15P57071 1507 aaPredicted RBP15.55■□□□□ 0.08
VPS4B-204ENST00000589604 CLTCQ00610 1675 aaKnown RBP15.54■□□□□ 0.08
VPS4B-204ENST00000589604 CCER1Q8TC90 406 aaPredicted RBP15.54■□□□□ 0.08
VPS4B-204ENST00000589604 DHX57Q6P158 1386 aaKnown RBP15.54■□□□□ 0.08
VPS4B-204ENST00000589604 UNC13BO14795 1591 aa15.53■□□□□ 0.08
VPS4B-204ENST00000589604 VWDEQ8N2E2 1590 aa15.53■□□□□ 0.08
VPS4B-204ENST00000589604 CEP152O94986 1710 aa15.52■□□□□ 0.08
VPS4B-204ENST00000589604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.52■□□□□ 0.08
VPS4B-204ENST00000589604 ABCC3O15438 1527 aa15.52■□□□□ 0.07
VPS4B-204ENST00000589604 PTPRMP28827 1452 aa15.51■□□□□ 0.07
VPS4B-204ENST00000589604 KDM5DQ9BY66 1539 aa15.5■□□□□ 0.07
VPS4B-204ENST00000589604 C3P01024 1663 aa15.49■□□□□ 0.07
VPS4B-204ENST00000589604 CEBPAP49715 358 aaPredicted RBP15.49■□□□□ 0.07
VPS4B-204ENST00000589604 MROH2AA6NES4 1674 aa15.48■□□□□ 0.07
VPS4B-204ENST00000589604 WASHC2CQ9Y4E1 1318 aa15.48■□□□□ 0.07
VPS4B-204ENST00000589604 PPP6R1Q9UPN7 881 aa15.47■□□□□ 0.07
VPS4B-204ENST00000589604 ZMYM3Q14202 1370 aa15.46■□□□□ 0.07
VPS4B-204ENST00000589604 ZC3H13Q5T200 1668 aaKnown RBP15.46■□□□□ 0.07
VPS4B-204ENST00000589604 CAMSAP1Q5T5Y3 1602 aa15.46■□□□□ 0.07
VPS4B-204ENST00000589604 CNTLNQ9NXG0 1405 aa15.46■□□□□ 0.07
VPS4B-204ENST00000589604 FAM135AQ9P2D6 1515 aa15.46■□□□□ 0.07
VPS4B-204ENST00000589604 IQGAP3Q86VI3 1631 aa15.46■□□□□ 0.06
VPS4B-204ENST00000589604 LMTK2Q8IWU2 1503 aa15.45■□□□□ 0.06
VPS4B-204ENST00000589604 NUP155O75694 1391 aa15.44■□□□□ 0.06
VPS4B-204ENST00000589604 ESF1Q9H501 851 aaKnown RBP15.44■□□□□ 0.06
VPS4B-204ENST00000589604 PZPP20742 1482 aa15.44■□□□□ 0.06
VPS4B-204ENST00000589604 ZEB1P37275 1124 aaPredicted RBP15.43■□□□□ 0.06
VPS4B-204ENST00000589604 FBXO31Q5XUX0 539 aaPredicted RBP15.43■□□□□ 0.06
VPS4B-204ENST00000589604 KANK1Q14678 1352 aa15.42■□□□□ 0.06
VPS4B-204ENST00000589604 EFCAB6Q5THR3 1501 aa15.42■□□□□ 0.06
VPS4B-204ENST00000589604 NPATQ14207 1427 aa15.41■□□□□ 0.06
VPS4B-204ENST00000589604 TET3O43151 1660 aa15.41■□□□□ 0.06
VPS4B-204ENST00000589604 CLSPNQ9HAW4 1339 aa15.41■□□□□ 0.06
VPS4B-204ENST00000589604 E9PCH4 1651 aa15.4■□□□□ 0.06
VPS4B-204ENST00000589604 CFAP65Q6ZU64 1925 aaKnown RBP15.39■□□□□ 0.05
VPS4B-204ENST00000589604 ARHGAP31Q2M1Z3 1444 aa15.39■□□□□ 0.05
VPS4B-204ENST00000589604 TRIM52Q96A61 297 aa15.39■□□□□ 0.05
VPS4B-204ENST00000589604 PREX1Q8TCU6 1659 aa15.38■□□□□ 0.05
VPS4B-204ENST00000589604 ERVK-7P63135 1459 aa15.37■□□□□ 0.05
VPS4B-204ENST00000589604 SPATA31D1Q6ZQQ2 1576 aa15.36■□□□□ 0.05
VPS4B-204ENST00000589604 SYNMO15061 1565 aa15.35■□□□□ 0.05
VPS4B-204ENST00000589604 ACIN1Q9UKV3 1341 aaKnown RBP15.35■□□□□ 0.05
VPS4B-204ENST00000589604 FOXD1Q16676 465 aa15.34■□□□□ 0.05
VPS4B-204ENST00000589604 NOS1P29475 1434 aa15.33■□□□□ 0.04
VPS4B-204ENST00000589604 RPRD2Q5VT52 1461 aaKnown RBP15.32■□□□□ 0.04
VPS4B-204ENST00000589604 PKD2Q13563 968 aa15.32■□□□□ 0.04
VPS4B-204ENST00000589604 MPHOSPH9Q99550 1183 aa15.32■□□□□ 0.04
VPS4B-204ENST00000589604 MYO3AQ8NEV4 1616 aa15.32■□□□□ 0.04
VPS4B-204ENST00000589604 PLA2R1Q13018 1463 aa15.32■□□□□ 0.04
VPS4B-204ENST00000589604 TNRQ92752 1358 aa15.32■□□□□ 0.04
VPS4B-204ENST00000589604 UGGT1Q9NYU2 1555 aa15.31■□□□□ 0.04
VPS4B-204ENST00000589604 LMTK3Q96Q04 1460 aa15.3■□□□□ 0.04
VPS4B-204ENST00000589604 SETD1BQ9UPS6 1966 aaKnown RBP15.29■□□□□ 0.04
VPS4B-204ENST00000589604 PTPRTO14522 1441 aa15.29■□□□□ 0.04
VPS4B-204ENST00000589604 SPHKAPQ2M3C7 1700 aa15.29■□□□□ 0.04
VPS4B-204ENST00000589604 ZNF142P52746 1687 aaPredicted RBP15.27■□□□□ 0.04
VPS4B-204ENST00000589604 PIK3C2BO00750 1634 aa15.27■□□□□ 0.04
VPS4B-204ENST00000589604 CEP170BQ9Y4F5 1589 aaPredicted RBP15.26■□□□□ 0.03
VPS4B-204ENST00000589604 UHRF1BP1Q6BDS2 1440 aa15.26■□□□□ 0.03
VPS4B-204ENST00000589604 SIN3AQ96ST3 1273 aa15.26■□□□□ 0.03
VPS4B-204ENST00000589604 IDI1Q13907 227 aa15.25■□□□□ 0.03
VPS4B-204ENST00000589604 TRPM2O94759 1503 aa15.25■□□□□ 0.03
VPS4B-204ENST00000589604 CLTCL1P53675 1640 aa15.25■□□□□ 0.03
VPS4B-204ENST00000589604 HSPA2P54652 639 aa15.25■□□□□ 0.03
VPS4B-204ENST00000589604 A2ML1A8K2U0 1454 aa15.25■□□□□ 0.03
VPS4B-204ENST00000589604 NLRP1Q9C000 1473 aa15.25■□□□□ 0.03
VPS4B-204ENST00000589604 ANKRD30BQ9BXX2 1392 aa15.23■□□□□ 0.03
VPS4B-204ENST00000589604 UBR1Q8IWV7 1749 aa15.23■□□□□ 0.03
VPS4B-204ENST00000589604 MYO5BQ9ULV0 1848 aa15.21■□□□□ 0.03
VPS4B-204ENST00000589604 TMEM131LA2VDJ0 1609 aa15.2■□□□□ 0.02
VPS4B-204ENST00000589604 ADGRB3O60242 1522 aa15.19■□□□□ 0.02
VPS4B-204ENST00000589604 SLC52A1Q9NWF4 448 aa15.19■□□□□ 0.02
VPS4B-204ENST00000589604 NEUROD1Q13562 356 aa15.18■□□□□ 0.02
VPS4B-204ENST00000589604 KDM5AP29375 1690 aaKnown RBP15.17■□□□□ 0.02
VPS4B-204ENST00000589604 STRCQ7RTU9 1775 aa15.17■□□□□ 0.02
VPS4B-204ENST00000589604 TIMELESSQ9UNS1 1208 aa15.15■□□□□ 0.02
VPS4B-204ENST00000589604 CCDC144AA2RUR9 1427 aa15.14■□□□□ 0.01
VPS4B-204ENST00000589604 ARHGAP23Q9P227 1491 aa15.14■□□□□ 0.01
VPS4B-204ENST00000589604 SLIT1O75093 1534 aa15.13■□□□□ 0.01
VPS4B-204ENST00000589604 CHGAP10645 457 aaKnown RBP15.13■□□□□ 0.01
VPS4B-204ENST00000589604 KIF1BO60333 1816 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms