RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 ADAMTSL3P82987 1691 aa16.07■□□□□ 0.16
SMARCA4-213ENST00000587988 SETD5Q9C0A6 1442 aa16.06■□□□□ 0.16
SMARCA4-213ENST00000587988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.06■□□□□ 0.161e-7■■■□□ 17.3
SMARCA4-213ENST00000587988 DEPDC5O75140 1603 aa16.05■□□□□ 0.16
SMARCA4-213ENST00000587988 MADDQ8WXG6 1647 aa16.05■□□□□ 0.16
SMARCA4-213ENST00000587988 FER1L4A9Z1Z3 1794 aa16.03■□□□□ 0.16
SMARCA4-213ENST00000587988 PRDM15P57071 1507 aaPredicted RBP16.03■□□□□ 0.16
SMARCA4-213ENST00000587988 RAB3GAP2Q9H2M9 1393 aa16.02■□□□□ 0.16
SMARCA4-213ENST00000587988 UNC13BO14795 1591 aa16.02■□□□□ 0.16
SMARCA4-213ENST00000587988 PCGF6Q9BYE7 350 aa16.02■□□□□ 0.16
SMARCA4-213ENST00000587988 PPP6R1Q9UPN7 881 aa16.02■□□□□ 0.16
SMARCA4-213ENST00000587988 CLTCQ00610 1675 aaKnown RBP16.01■□□□□ 0.15
SMARCA4-213ENST00000587988 RIMS1Q86UR5 1692 aaKnown RBP16.01■□□□□ 0.15
SMARCA4-213ENST00000587988 VWDEQ8N2E2 1590 aa16■□□□□ 0.15
SMARCA4-213ENST00000587988 WASHC2CQ9Y4E1 1318 aa16■□□□□ 0.15
SMARCA4-213ENST00000587988 CEP152O94986 1710 aa16■□□□□ 0.15
SMARCA4-213ENST00000587988 NUP155O75694 1391 aa16■□□□□ 0.15
SMARCA4-213ENST00000587988 ABCC3O15438 1527 aa15.99■□□□□ 0.15
SMARCA4-213ENST00000587988 KDM5DQ9BY66 1539 aa15.99■□□□□ 0.15
SMARCA4-213ENST00000587988 ESF1Q9H501 851 aaKnown RBP15.99■□□□□ 0.15
SMARCA4-213ENST00000587988 KANK1Q14678 1352 aa15.99■□□□□ 0.15
SMARCA4-213ENST00000587988 TRIM52Q96A61 297 aa15.98■□□□□ 0.15
SMARCA4-213ENST00000587988 ZC3H13Q5T200 1668 aaKnown RBP15.96■□□□□ 0.15
SMARCA4-213ENST00000587988 CNTLNQ9NXG0 1405 aa15.96■□□□□ 0.15
SMARCA4-213ENST00000587988 FAM135AQ9P2D6 1515 aa15.96■□□□□ 0.15
SMARCA4-213ENST00000587988 CEBPAP49715 358 aaPredicted RBP15.96■□□□□ 0.15
SMARCA4-213ENST00000587988 PLPPR3Q6T4P5 718 aa15.96■□□□□ 0.15
SMARCA4-213ENST00000587988 IQGAP3Q86VI3 1631 aa15.96■□□□□ 0.15
SMARCA4-213ENST00000587988 ZMYM3Q14202 1370 aa15.96■□□□□ 0.15
SMARCA4-213ENST00000587988 PTPRMP28827 1452 aa15.95■□□□□ 0.14
SMARCA4-213ENST00000587988 MROH2AA6NES4 1674 aa15.95■□□□□ 0.14
SMARCA4-213ENST00000587988 LMTK2Q8IWU2 1503 aa15.94■□□□□ 0.14
SMARCA4-213ENST00000587988 CAMSAP1Q5T5Y3 1602 aa15.94■□□□□ 0.14
SMARCA4-213ENST00000587988 HRCP23327 699 aa15.94■□□□□ 0.14
SMARCA4-213ENST00000587988 C3P01024 1663 aa15.94■□□□□ 0.14
SMARCA4-213ENST00000587988 PZPP20742 1482 aa15.93■□□□□ 0.14
SMARCA4-213ENST00000587988 TET3O43151 1660 aa15.92■□□□□ 0.14
SMARCA4-213ENST00000587988 FBXO31Q5XUX0 539 aaPredicted RBP15.91■□□□□ 0.14
SMARCA4-213ENST00000587988 CFAP65Q6ZU64 1925 aaKnown RBP15.9■□□□□ 0.14
SMARCA4-213ENST00000587988 EFCAB6Q5THR3 1501 aa15.9■□□□□ 0.14
SMARCA4-213ENST00000587988 NPATQ14207 1427 aa15.9■□□□□ 0.14
SMARCA4-213ENST00000587988 ARHGAP31Q2M1Z3 1444 aa15.89■□□□□ 0.13
SMARCA4-213ENST00000587988 MPHOSPH9Q99550 1183 aa15.89■□□□□ 0.13
SMARCA4-213ENST00000587988 SLC4A1APQ9BWU0 796 aaKnown RBP15.89■□□□□ 0.13
SMARCA4-213ENST00000587988 E9PCH4 1651 aa15.89■□□□□ 0.13
SMARCA4-213ENST00000587988 ACIN1Q9UKV3 1341 aaKnown RBP15.88■□□□□ 0.13
SMARCA4-213ENST00000587988 PKD2Q13563 968 aa15.87■□□□□ 0.13
SMARCA4-213ENST00000587988 FOXD1Q16676 465 aa15.86■□□□□ 0.13
SMARCA4-213ENST00000587988 PREX1Q8TCU6 1659 aa15.85■□□□□ 0.13
SMARCA4-213ENST00000587988 ERVK-7P63135 1459 aa15.84■□□□□ 0.13
SMARCA4-213ENST00000587988 RPRD2Q5VT52 1461 aaKnown RBP15.84■□□□□ 0.13
SMARCA4-213ENST00000587988 SPATA31D1Q6ZQQ2 1576 aa15.83■□□□□ 0.13
SMARCA4-213ENST00000587988 NOS1P29475 1434 aa15.82■□□□□ 0.12
SMARCA4-213ENST00000587988 TNRQ92752 1358 aa15.81■□□□□ 0.12
SMARCA4-213ENST00000587988 SYNMO15061 1565 aa15.8■□□□□ 0.12
SMARCA4-213ENST00000587988 SETD1BQ9UPS6 1966 aaKnown RBP15.8■□□□□ 0.12
SMARCA4-213ENST00000587988 PLA2R1Q13018 1463 aa15.79■□□□□ 0.12
SMARCA4-213ENST00000587988 PTPRTO14522 1441 aa15.79■□□□□ 0.12
SMARCA4-213ENST00000587988 SPHKAPQ2M3C7 1700 aa15.79■□□□□ 0.12
SMARCA4-213ENST00000587988 DHX57Q6P158 1386 aaKnown RBP15.78■□□□□ 0.12
SMARCA4-213ENST00000587988 AEBP2Q6ZN18 517 aaPredicted RBP15.77■□□□□ 0.12
SMARCA4-213ENST00000587988 UGGT1Q9NYU2 1555 aa15.77■□□□□ 0.11
SMARCA4-213ENST00000587988 MYO3AQ8NEV4 1616 aa15.76■□□□□ 0.11
SMARCA4-213ENST00000587988 IDI1Q13907 227 aa15.76■□□□□ 0.11
SMARCA4-213ENST00000587988 TRPM2O94759 1503 aa15.74■□□□□ 0.11
SMARCA4-213ENST00000587988 PIK3C2BO00750 1634 aa15.74■□□□□ 0.11
SMARCA4-213ENST00000587988 UHRF1BP1Q6BDS2 1440 aa15.74■□□□□ 0.11
SMARCA4-213ENST00000587988 ANKRD30BQ9BXX2 1392 aa15.74■□□□□ 0.11
SMARCA4-213ENST00000587988 NLRP1Q9C000 1473 aa15.73■□□□□ 0.11
SMARCA4-213ENST00000587988 CLTCL1P53675 1640 aa15.73■□□□□ 0.11
SMARCA4-213ENST00000587988 SLC52A1Q9NWF4 448 aa15.73■□□□□ 0.11
SMARCA4-213ENST00000587988 CEP170BQ9Y4F5 1589 aaPredicted RBP15.72■□□□□ 0.11
SMARCA4-213ENST00000587988 A2ML1A8K2U0 1454 aa15.71■□□□□ 0.11
SMARCA4-213ENST00000587988 LMTK3Q96Q04 1460 aa15.71■□□□□ 0.11
SMARCA4-213ENST00000587988 ZNF142P52746 1687 aaPredicted RBP15.71■□□□□ 0.11
SMARCA4-213ENST00000587988 UBR1Q8IWV7 1749 aa15.69■□□□□ 0.1
SMARCA4-213ENST00000587988 CCDC144AA2RUR9 1427 aa15.68■□□□□ 0.1
SMARCA4-213ENST00000587988 CHGAP10645 457 aaKnown RBP15.68■□□□□ 0.1
SMARCA4-213ENST00000587988 HSPA2P54652 639 aa15.68■□□□□ 0.1
SMARCA4-213ENST00000587988 MYO5BQ9ULV0 1848 aa15.68■□□□□ 0.1
SMARCA4-213ENST00000587988 TMEM131LA2VDJ0 1609 aa15.68■□□□□ 0.1
SMARCA4-213ENST00000587988 STAG3Q9UJ98 1225 aa15.67■□□□□ 0.1
SMARCA4-213ENST00000587988 ADGRB3O60242 1522 aa15.67■□□□□ 0.1
SMARCA4-213ENST00000587988 SIN3AQ96ST3 1273 aa15.66■□□□□ 0.1
SMARCA4-213ENST00000587988 KIF1BO60333 1816 aa15.66■□□□□ 0.1
SMARCA4-213ENST00000587988 KDM5AP29375 1690 aaKnown RBP15.64■□□□□ 0.09
SMARCA4-213ENST00000587988 THEMISQ8N1K5 641 aaPredicted RBP15.64■□□□□ 0.09
SMARCA4-213ENST00000587988 SPATA31E1Q6ZUB1 1445 aa15.62■□□□□ 0.09
SMARCA4-213ENST00000587988 RGL3Q3MIN7 710 aa15.61■□□□□ 0.09
SMARCA4-213ENST00000587988 CCER1Q8TC90 406 aaPredicted RBP15.61■□□□□ 0.09
SMARCA4-213ENST00000587988 TMEM2Q9UHN6 1383 aa15.61■□□□□ 0.09
SMARCA4-213ENST00000587988 ARHGAP23Q9P227 1491 aa15.6■□□□□ 0.09
SMARCA4-213ENST00000587988 NEUROD1Q13562 356 aa15.6■□□□□ 0.09
SMARCA4-213ENST00000587988 ZNF326Q5BKZ1 582 aaKnown RBP15.6■□□□□ 0.09
SMARCA4-213ENST00000587988 SLIT1O75093 1534 aa15.59■□□□□ 0.09
SMARCA4-213ENST00000587988 LTKP29376 864 aa15.59■□□□□ 0.09
SMARCA4-213ENST00000587988 NUTM2DQ5VT03 806 aaPredicted RBP15.59■□□□□ 0.09
SMARCA4-213ENST00000587988 NCKAP5LQ9HCH0 1330 aa15.58■□□□□ 0.08
SMARCA4-213ENST00000587988 ZFYVE9O95405 1425 aa15.58■□□□□ 0.08
SMARCA4-213ENST00000587988 RIMS2Q9UQ26 1411 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms