RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 SAMD9LQ8IVG5 1584 aa12.48□□□□□ -0.41
SMAD4-204ENST00000586253 ZMYM4Q5VZL5 1548 aa12.47□□□□□ -0.41
SMAD4-204ENST00000586253 ZNF518AQ6AHZ1 1483 aa12.47□□□□□ -0.41
SMAD4-204ENST00000586253 KIAA1107Q9UPP5 1409 aa12.47□□□□□ -0.41
SMAD4-204ENST00000586253 RAPGEF3O95398 923 aa12.47□□□□□ -0.41
SMAD4-204ENST00000586253 MS4A3Q96HJ5 214 aa12.47□□□□□ -0.41
SMAD4-204ENST00000586253 MYOM3Q5VTT5 1437 aa12.46□□□□□ -0.41
SMAD4-204ENST00000586253 MIA2Q96PC5 1412 aa12.46□□□□□ -0.41
SMAD4-204ENST00000586253 CCDC61Q9Y6R9 512 aa12.46□□□□□ -0.41
SMAD4-204ENST00000586253 MAGI2Q86UL8 1455 aa12.46□□□□□ -0.42
SMAD4-204ENST00000586253 KDM5CP41229 1560 aa12.45□□□□□ -0.42
SMAD4-204ENST00000586253 SYCP2Q9BX26 1530 aa12.44□□□□□ -0.42
SMAD4-204ENST00000586253 ARHGEF12Q9NZN5 1544 aa12.44□□□□□ -0.42
SMAD4-204ENST00000586253 ASTLQ6HA08 431 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-204ENST00000586253 OTUD5Q96G74 571 aa12.44□□□□□ -0.42
SMAD4-204ENST00000586253 ZNF777Q9ULD5 760 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-204ENST00000586253 CAMSAP2Q08AD1 1489 aa12.43□□□□□ -0.42
SMAD4-204ENST00000586253 ARHGEF40Q8TER5 1519 aa12.42□□□□□ -0.42
SMAD4-204ENST00000586253 TRAPPC8Q9Y2L5 1435 aa12.42□□□□□ -0.42
SMAD4-204ENST00000586253 MBD5Q9P267 1494 aa12.41□□□□□ -0.42
SMAD4-204ENST00000586253 MLH3Q9UHC1 1453 aa12.41□□□□□ -0.42
SMAD4-204ENST00000586253 HECW2Q9P2P5 1572 aa12.41□□□□□ -0.42
SMAD4-204ENST00000586253 ZFYVE16Q7Z3T8 1539 aa12.41□□□□□ -0.42
SMAD4-204ENST00000586253 ARHGEF5Q12774 1597 aa12.4□□□□□ -0.42
SMAD4-204ENST00000586253 FGD6Q6ZV73 1430 aa12.4□□□□□ -0.42
SMAD4-204ENST00000586253 ATMINO43313 823 aaPredicted RBP12.4□□□□□ -0.42
SMAD4-204ENST00000586253 RSPH4AQ5TD94 716 aa12.4□□□□□ -0.42
SMAD4-204ENST00000586253 AFAP1Q8N556 730 aa12.4□□□□□ -0.42
SMAD4-204ENST00000586253 TSPYL2Q9H2G4 693 aaPredicted RBP12.4□□□□□ -0.42
SMAD4-204ENST00000586253 ZNF644Q9H582 1327 aaPredicted RBP12.39□□□□□ -0.43
SMAD4-204ENST00000586253 HNRNPMP52272 730 aaKnown RBP eCLIP12.39□□□□□ -0.43
SMAD4-204ENST00000586253 PTPN23Q9H3S7 1636 aa12.39□□□□□ -0.43
SMAD4-204ENST00000586253 TCOF1Q13428 1488 aaKnown RBP12.39□□□□□ -0.43
SMAD4-204ENST00000586253 KIF12Q96FN5 646 aa12.38□□□□□ -0.43
SMAD4-204ENST00000586253 CCDC141Q6ZP82 1450 aa12.38□□□□□ -0.43
SMAD4-204ENST00000586253 RASEFQ8IZ41 740 aa12.37□□□□□ -0.43
SMAD4-204ENST00000586253 INO80Q9ULG1 1556 aaPredicted RBP12.37□□□□□ -0.43
SMAD4-204ENST00000586253 YEATS2Q9ULM3 1422 aa12.37□□□□□ -0.43
SMAD4-204ENST00000586253 KIDINS220Q9ULH0 1771 aa12.36□□□□□ -0.43
SMAD4-204ENST00000586253 ATP7AQ04656 1500 aa12.36□□□□□ -0.43
SMAD4-204ENST00000586253 RTEL1-TNFRSF6BF6WH68 1400 aa12.36□□□□□ -0.43
SMAD4-204ENST00000586253 SPAG9O60271 1321 aaKnown RBP12.36□□□□□ -0.43
SMAD4-204ENST00000586253 REREQ9P2R6 1566 aa12.35□□□□□ -0.43
SMAD4-204ENST00000586253 DIP2CQ9Y2E4 1556 aa12.35□□□□□ -0.43
SMAD4-204ENST00000586253 ATP10AO60312 1499 aa12.35□□□□□ -0.43
SMAD4-204ENST00000586253 POTEJP0CG39 1038 aa12.35□□□□□ -0.43
SMAD4-204ENST00000586253 C9orf84Q5VXU9 1444 aa12.35□□□□□ -0.43
SMAD4-204ENST00000586253 ABCA6Q8N139 1617 aa12.34□□□□□ -0.43
SMAD4-204ENST00000586253 AMER1Q5JTC6 1135 aaPredicted RBP12.34□□□□□ -0.43
SMAD4-204ENST00000586253 MIER1Q8N108 512 aa12.33□□□□□ -0.44
SMAD4-204ENST00000586253 MAST1Q9Y2H9 1570 aa12.33□□□□□ -0.44
SMAD4-204ENST00000586253 DNMT1P26358 1616 aaKnown RBP12.33□□□□□ -0.44
SMAD4-204ENST00000586253 TSPY4P0CV99 314 aa12.32□□□□□ -0.44
SMAD4-204ENST00000586253 TSPY10P0CW01 314 aa12.32□□□□□ -0.44
SMAD4-204ENST00000586253 MYT1LQ9UL68 1186 aa12.32□□□□□ -0.44
SMAD4-204ENST00000586253 TRPC6Q9Y210 931 aa12.32□□□□□ -0.44
SMAD4-204ENST00000586253 SHANK2Q9UPX8 1470 aa12.32□□□□□ -0.44
SMAD4-204ENST00000586253 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.31□□□□□ -0.44
SMAD4-204ENST00000586253 FKBP8Q14318 412 aa12.31□□□□□ -0.44
SMAD4-204ENST00000586253 PPARGC1BQ86YN6 1023 aaKnown RBP12.31□□□□□ -0.44
SMAD4-204ENST00000586253 RTN4Q9NQC3 1192 aaKnown RBP12.31□□□□□ -0.44
SMAD4-204ENST00000586253 CROCC2H7BZ55 1655 aa12.31□□□□□ -0.44
SMAD4-204ENST00000586253 ADGBQ8N7X0 1667 aa12.31□□□□□ -0.44
SMAD4-204ENST00000586253 ABCC5O15440 1437 aa12.3□□□□□ -0.44
SMAD4-204ENST00000586253 AGLP35573 1532 aa12.3□□□□□ -0.44
SMAD4-204ENST00000586253 DAPK1P53355 1430 aa12.29□□□□□ -0.44
SMAD4-204ENST00000586253 RRBP1Q9P2E9 1410 aaKnown RBP12.29□□□□□ -0.44
SMAD4-204ENST00000586253 SIGLEC1Q9BZZ2 1709 aa12.29□□□□□ -0.44
SMAD4-204ENST00000586253 ATN1P54259 1190 aaPredicted RBP12.29□□□□□ -0.44
SMAD4-204ENST00000586253 METRNQ9UJH8 293 aa12.29□□□□□ -0.44
SMAD4-204ENST00000586253 PLXNC1O60486 1568 aa12.29□□□□□ -0.44
SMAD4-204ENST00000586253 BCORL1Q5H9F3 1711 aa12.28□□□□□ -0.44
SMAD4-204ENST00000586253 A2MP01023 1474 aa12.28□□□□□ -0.44
SMAD4-204ENST00000586253 MAP3K13O43283 966 aa12.28□□□□□ -0.44
SMAD4-204ENST00000586253 C7P10643 843 aa12.27□□□□□ -0.45
SMAD4-204ENST00000586253 FAM50AQ14320 339 aaKnown RBP12.27□□□□□ -0.45
SMAD4-204ENST00000586253 SLC39A7Q92504 469 aa12.27□□□□□ -0.45
SMAD4-204ENST00000586253 ARID4BQ4LE39 1312 aaPredicted RBP12.27□□□□□ -0.45
SMAD4-204ENST00000586253 ADAMTSL3P82987 1691 aa12.26□□□□□ -0.45
SMAD4-204ENST00000586253 POTEFA5A3E0 1075 aa12.26□□□□□ -0.45
SMAD4-204ENST00000586253 BMP2KQ9NSY1 1161 aaPredicted RBP12.26□□□□□ -0.45
SMAD4-204ENST00000586253 KDM4FA0A1W2PPD8 638 aa12.25□□□□□ -0.45
SMAD4-204ENST00000586253 NUBP1P53384 320 aa12.25□□□□□ -0.45
SMAD4-204ENST00000586253 DHX29Q7Z478 1369 aaKnown RBP12.25□□□□□ -0.45
SMAD4-204ENST00000586253 ADGRL2O95490 1459 aa12.25□□□□□ -0.45
SMAD4-204ENST00000586253 DUOX2Q9NRD8 1548 aa12.23□□□□□ -0.45
SMAD4-204ENST00000586253 ANKRD30AQ9BXX3 1397 aa12.23□□□□□ -0.45
SMAD4-204ENST00000586253 NCOA1Q15788 1441 aa12.22□□□□□ -0.45
SMAD4-204ENST00000586253 KIF15Q9NS87 1388 aa12.22□□□□□ -0.45
SMAD4-204ENST00000586253 EIF2AK4Q9P2K8 1649 aaKnown RBP12.22□□□□□ -0.45
SMAD4-204ENST00000586253 ROCK1Q13464 1354 aa12.21□□□□□ -0.45
SMAD4-204ENST00000586253 MADDQ8WXG6 1647 aa12.21□□□□□ -0.46
SMAD4-204ENST00000586253 PTPRKQ15262 1439 aa12.2□□□□□ -0.46
SMAD4-204ENST00000586253 ERBINQ96RT1 1412 aa12.2□□□□□ -0.46
SMAD4-204ENST00000586253 FER1L4A9Z1Z3 1794 aa12.2□□□□□ -0.46
SMAD4-204ENST00000586253 PLEKHG5O94827 1062 aa12.2□□□□□ -0.46
SMAD4-204ENST00000586253 TIE1P35590 1138 aa12.19□□□□□ -0.46
SMAD4-204ENST00000586253 PLCD3Q8N3E9 789 aa12.19□□□□□ -0.46
SMAD4-204ENST00000586253 FAM135AQ9P2D6 1515 aa12.19□□□□□ -0.46
SMAD4-204ENST00000586253 RNF17Q9BXT8 1623 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms