RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 WASHC2CQ9Y4E1 1318 aa23.08■■□□□ 1.29
SDF2-202ENST00000585428 MYO3AQ8NEV4 1616 aa23.08■■□□□ 1.29
SDF2-202ENST00000585428 A2ML1A8K2U0 1454 aa23.08■■□□□ 1.29
SDF2-202ENST00000585428 CCDC141Q6ZP82 1450 aa23.08■■□□□ 1.29
SDF2-202ENST00000585428 ZNF142P52746 1687 aaPredicted RBP23.07■■□□□ 1.28
SDF2-202ENST00000585428 CAMSAP2Q08AD1 1489 aa23.06■■□□□ 1.28
SDF2-202ENST00000585428 LOC105371045A0A1W2PR82 267 aa23.06■■□□□ 1.28
SDF2-202ENST00000585428 TNRQ92752 1358 aa23.04■■□□□ 1.28
SDF2-202ENST00000585428 UBAP1LF5GYI3 381 aa23.04■■□□□ 1.28
SDF2-202ENST00000585428 DNMT1P26358 1616 aaKnown RBP23.02■■□□□ 1.28
SDF2-202ENST00000585428 PZPP20742 1482 aa23.02■■□□□ 1.28
SDF2-202ENST00000585428 MIA2Q96PC5 1412 aa23.01■■□□□ 1.27
SDF2-202ENST00000585428 KANK4Q5T7N3 995 aaPredicted RBP23■■□□□ 1.27
SDF2-202ENST00000585428 THEMISQ8N1K5 641 aaPredicted RBP23■■□□□ 1.27
SDF2-202ENST00000585428 ANKLE2Q86XL3 938 aa22.99■■□□□ 1.27
SDF2-202ENST00000585428 LRRC9Q6ZRR7 1453 aa22.98■■□□□ 1.27
SDF2-202ENST00000585428 KDM5DQ9BY66 1539 aa22.98■■□□□ 1.27
SDF2-202ENST00000585428 FAM135AQ9P2D6 1515 aa22.98■■□□□ 1.27
SDF2-202ENST00000585428 SOCS7O14512 581 aa22.98■■□□□ 1.27
SDF2-202ENST00000585428 ARHGEF5Q12774 1597 aa22.97■■□□□ 1.27
SDF2-202ENST00000585428 VPS8Q8N3P4 1428 aa22.97■■□□□ 1.27
SDF2-202ENST00000585428 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.96■■□□□ 1.27
SDF2-202ENST00000585428 NLRP1Q9C000 1473 aa22.92■■□□□ 1.26
SDF2-202ENST00000585428 MAP3K1Q13233 1512 aa22.9■■□□□ 1.26
SDF2-202ENST00000585428 SHANK2Q9UPX8 1470 aa22.9■■□□□ 1.26
SDF2-202ENST00000585428 NEURL4Q96JN8 1562 aa22.89■■□□□ 1.26
SDF2-202ENST00000585428 TOM1O60784 492 aa22.89■■□□□ 1.25
SDF2-202ENST00000585428 MED14O60244 1454 aa22.87■■□□□ 1.25
SDF2-202ENST00000585428 UGGT1Q9NYU2 1555 aa22.87■■□□□ 1.25
SDF2-202ENST00000585428 MAST1Q9Y2H9 1570 aa22.86■■□□□ 1.25
SDF2-202ENST00000585428 MYOM3Q5VTT5 1437 aa22.86■■□□□ 1.25
SDF2-202ENST00000585428 CPS1P31327 1500 aa22.86■■□□□ 1.25
SDF2-202ENST00000585428 SPATA31D1Q6ZQQ2 1576 aa22.85■■□□□ 1.25
SDF2-202ENST00000585428 NPHP4O75161 1426 aaPredicted RBP22.84■■□□□ 1.25
SDF2-202ENST00000585428 ABCC3O15438 1527 aa22.83■■□□□ 1.25
SDF2-202ENST00000585428 HSPA1LP34931 641 aa22.83■■□□□ 1.25
SDF2-202ENST00000585428 PIP4K2BP78356 416 aa22.83■■□□□ 1.25
SDF2-202ENST00000585428 RNF17Q9BXT8 1623 aaKnown RBP22.82■■□□□ 1.24
SDF2-202ENST00000585428 DEPDC5O75140 1603 aa22.8■■□□□ 1.24
SDF2-202ENST00000585428 VWDEQ8N2E2 1590 aa22.8■■□□□ 1.24
SDF2-202ENST00000585428 POLR1AO95602 1720 aaPredicted RBP22.79■■□□□ 1.24
SDF2-202ENST00000585428 RRP7BPQ9NSQ0 103 aa22.79■■□□□ 1.24
SDF2-202ENST00000585428 ERVK-7P63135 1459 aa22.79■■□□□ 1.24
SDF2-202ENST00000585428 SCAF1Q9H7N4 1312 aaKnown RBP22.78■■□□□ 1.24
SDF2-202ENST00000585428 DUOX2Q9NRD8 1548 aa22.77■■□□□ 1.24
SDF2-202ENST00000585428 ABCC5O15440 1437 aa22.76■■□□□ 1.23
SDF2-202ENST00000585428 MROH1Q8NDA8 1641 aa22.76■■□□□ 1.23
SDF2-202ENST00000585428 EIF2AK4Q9P2K8 1649 aaKnown RBP22.76■■□□□ 1.23
SDF2-202ENST00000585428 LTKP29376 864 aa22.75■■□□□ 1.23
SDF2-202ENST00000585428 KIF15Q9NS87 1388 aa22.75■■□□□ 1.23
SDF2-202ENST00000585428 ARHGAP31Q2M1Z3 1444 aa22.74■■□□□ 1.23
SDF2-202ENST00000585428 ZC3H13Q5T200 1668 aaKnown RBP22.73■■□□□ 1.23
SDF2-202ENST00000585428 APLP2Q06481 763 aa22.72■■□□□ 1.23
SDF2-202ENST00000585428 TXNDC2Q86VQ3 553 aa22.72■■□□□ 1.23
SDF2-202ENST00000585428 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.7■■□□□ 1.22
SDF2-202ENST00000585428 LRRC7Q96NW7 1537 aa22.69■■□□□ 1.22
SDF2-202ENST00000585428 ERBINQ96RT1 1412 aa22.69■■□□□ 1.22
SDF2-202ENST00000585428 ALKQ9UM73 1620 aa22.68■■□□□ 1.22
SDF2-202ENST00000585428 IQGAP1P46940 1657 aa22.68■■□□□ 1.22
SDF2-202ENST00000585428 ARHGAP23Q9P227 1491 aa22.66■■□□□ 1.22
SDF2-202ENST00000585428 DAPK1P53355 1430 aa22.66■■□□□ 1.22
SDF2-202ENST00000585428 EID1Q9Y6B2 187 aa22.66■■□□□ 1.22
SDF2-202ENST00000585428 SCAF11Q99590 1463 aaKnown RBP22.66■■□□□ 1.22
SDF2-202ENST00000585428 IDI1Q13907 227 aa22.65■■□□□ 1.22
SDF2-202ENST00000585428 CHIC2Q9UKJ5 165 aa22.65■■□□□ 1.22
SDF2-202ENST00000585428 SLIT1O75093 1534 aa22.65■■□□□ 1.22
SDF2-202ENST00000585428 PRDM15P57071 1507 aaPredicted RBP22.64■■□□□ 1.21
SDF2-202ENST00000585428 FGD6Q6ZV73 1430 aa22.64■■□□□ 1.21
SDF2-202ENST00000585428 UBR1Q8IWV7 1749 aa22.63■■□□□ 1.21
SDF2-202ENST00000585428 PTPN23Q9H3S7 1636 aa22.63■■□□□ 1.21
SDF2-202ENST00000585428 KANK1Q14678 1352 aa22.63■■□□□ 1.21
SDF2-202ENST00000585428 CEP152O94986 1710 aa22.62■■□□□ 1.21
SDF2-202ENST00000585428 STRCP1A6NGW2 1772 aa22.62■■□□□ 1.21
SDF2-202ENST00000585428 ANKRD30AQ9BXX3 1397 aa22.62■■□□□ 1.21
SDF2-202ENST00000585428 TMEM2Q9UHN6 1383 aa22.62■■□□□ 1.21
SDF2-202ENST00000585428 CFAP65Q6ZU64 1925 aaKnown RBP22.6■■□□□ 1.21
SDF2-202ENST00000585428 STAG3Q9UJ98 1225 aa22.59■■□□□ 1.21
SDF2-202ENST00000585428 MED1Q15648 1581 aaPredicted RBP22.58■■□□□ 1.2
SDF2-202ENST00000585428 LMTK2Q8IWU2 1503 aa22.57■■□□□ 1.2
SDF2-202ENST00000585428 CROCC2H7BZ55 1655 aa22.55■■□□□ 1.2
SDF2-202ENST00000585428 SLC52A1Q9NWF4 448 aa22.54■■□□□ 1.2
SDF2-202ENST00000585428 KCNA6P17658 529 aa22.53■■□□□ 1.2
SDF2-202ENST00000585428 NOS1P29475 1434 aa22.53■■□□□ 1.2
SDF2-202ENST00000585428 SYNMO15061 1565 aa22.52■■□□□ 1.2
SDF2-202ENST00000585428 PIK3C2BO00750 1634 aa22.51■■□□□ 1.19
SDF2-202ENST00000585428 SLC26A8Q96RN1 970 aa22.51■■□□□ 1.19
SDF2-202ENST00000585428 EFCAB6Q5THR3 1501 aa22.49■■□□□ 1.19
SDF2-202ENST00000585428 ADGRL2O95490 1459 aa22.48■■□□□ 1.19
SDF2-202ENST00000585428 FAM50AQ14320 339 aaKnown RBP22.48■■□□□ 1.19
SDF2-202ENST00000585428 TET3O43151 1660 aa22.48■■□□□ 1.19
SDF2-202ENST00000585428 FAM135BQ49AJ0 1406 aa22.48■■□□□ 1.19
SDF2-202ENST00000585428 TMEM94Q12767 1356 aa22.47■■□□□ 1.19
SDF2-202ENST00000585428 PROSER2Q86WR7 435 aaPredicted RBP22.46■■□□□ 1.19
SDF2-202ENST00000585428 KDM5AP29375 1690 aaKnown RBP22.46■■□□□ 1.19
SDF2-202ENST00000585428 ANKRD50Q9ULJ7 1429 aa22.45■■□□□ 1.18
SDF2-202ENST00000585428 RGS17Q9UGC6 210 aaPredicted RBP22.44■■□□□ 1.18
SDF2-202ENST00000585428 RBM33Q96EV2 1170 aaKnown RBP22.43■■□□□ 1.18
SDF2-202ENST00000585428 XIRP1Q702N8 1843 aaKnown RBP22.41■■□□□ 1.18
SDF2-202ENST00000585428 RPRD2Q5VT52 1461 aaKnown RBP22.41■■□□□ 1.18
SDF2-202ENST00000585428 HDGFP51858 240 aaKnown RBP22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms