RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 MBD5Q9P267 1494 aa29.61■■■□□ 2.33
TOP3A-220ENST00000585031 ALKQ9UM73 1620 aa29.6■■■□□ 2.33
TOP3A-220ENST00000585031 SHANK2Q9UPX8 1470 aa29.6■■■□□ 2.33
TOP3A-220ENST00000585031 CPS1P31327 1500 aa29.6■■■□□ 2.33
TOP3A-220ENST00000585031 TIAM1Q13009 1591 aa29.56■■■□□ 2.32
TOP3A-220ENST00000585031 VWDEQ8N2E2 1590 aa29.56■■■□□ 2.32
TOP3A-220ENST00000585031 TNRQ92752 1358 aa29.55■■■□□ 2.32
TOP3A-220ENST00000585031 DHX29Q7Z478 1369 aaKnown RBP29.54■■■□□ 2.32
TOP3A-220ENST00000585031 PHF23Q9BUL5 403 aaPredicted RBP29.54■■■□□ 2.32
TOP3A-220ENST00000585031 RTEL1-TNFRSF6BF6WH68 1400 aa29.52■■■□□ 2.32
TOP3A-220ENST00000585031 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.52■■■□□ 2.32
TOP3A-220ENST00000585031 MTUS2Q5JR59 1369 aa29.51■■■□□ 2.31
TOP3A-220ENST00000585031 ANKLE2Q86XL3 938 aa29.5■■■□□ 2.31
TOP3A-220ENST00000585031 PZPP20742 1482 aa29.49■■■□□ 2.31
TOP3A-220ENST00000585031 KIF3BO15066 747 aa29.49■■■□□ 2.31
TOP3A-220ENST00000585031 STRCP1A6NGW2 1772 aa29.48■■■□□ 2.31
TOP3A-220ENST00000585031 THEMISQ8N1K5 641 aaPredicted RBP29.45■■■□□ 2.31
TOP3A-220ENST00000585031 KDM5DQ9BY66 1539 aa29.45■■■□□ 2.3
TOP3A-220ENST00000585031 MIA2Q96PC5 1412 aa29.43■■■□□ 2.3
TOP3A-220ENST00000585031 MED14O60244 1454 aa29.42■■■□□ 2.3
TOP3A-220ENST00000585031 NPHP4O75161 1426 aaPredicted RBP29.41■■■□□ 2.3
TOP3A-220ENST00000585031 DEPDC5O75140 1603 aa29.41■■■□□ 2.3
TOP3A-220ENST00000585031 WASHC2CQ9Y4E1 1318 aa29.4■■■□□ 2.3
TOP3A-220ENST00000585031 UGGT1Q9NYU2 1555 aa29.39■■■□□ 2.3
TOP3A-220ENST00000585031 SENP3Q9H4L4 574 aaPredicted RBP29.38■■■□□ 2.29
TOP3A-220ENST00000585031 RGS17Q9UGC6 210 aaPredicted RBP29.38■■■□□ 2.29
TOP3A-220ENST00000585031 EHBP1L1Q8N3D4 1523 aa29.38■■■□□ 2.29
TOP3A-220ENST00000585031 IQGAP1P46940 1657 aa29.37■■■□□ 2.29
TOP3A-220ENST00000585031 CEP162Q5TB80 1403 aa29.37■■■□□ 2.29
TOP3A-220ENST00000585031 NLRP1Q9C000 1473 aa29.36■■■□□ 2.29
TOP3A-220ENST00000585031 FAM135AQ9P2D6 1515 aa29.36■■■□□ 2.29
TOP3A-220ENST00000585031 CCDC141Q6ZP82 1450 aa29.36■■■□□ 2.29
TOP3A-220ENST00000585031 LRRC7Q96NW7 1537 aa29.35■■■□□ 2.29
TOP3A-220ENST00000585031 CAMSAP2Q08AD1 1489 aa29.32■■■□□ 2.28
TOP3A-220ENST00000585031 CFAP65Q6ZU64 1925 aaKnown RBP29.28■■■□□ 2.28
TOP3A-220ENST00000585031 ZC3H13Q5T200 1668 aaKnown RBP29.27■■■□□ 2.28
TOP3A-220ENST00000585031 NCOA2Q15596 1464 aa29.26■■■□□ 2.27
TOP3A-220ENST00000585031 RNF17Q9BXT8 1623 aaKnown RBP29.25■■■□□ 2.27
TOP3A-220ENST00000585031 ABCC3O15438 1527 aa29.24■■■□□ 2.27
TOP3A-220ENST00000585031 XIRP1Q702N8 1843 aaKnown RBP29.23■■■□□ 2.27
TOP3A-220ENST00000585031 SYNMO15061 1565 aa29.22■■■□□ 2.27
TOP3A-220ENST00000585031 ARHGEF5Q12774 1597 aa29.22■■■□□ 2.27
TOP3A-220ENST00000585031 RSPH4AQ5TD94 716 aa29.21■■■□□ 2.27
TOP3A-220ENST00000585031 UBR1Q8IWV7 1749 aa29.2■■■□□ 2.26
TOP3A-220ENST00000585031 ERVK-7P63135 1459 aa29.19■■■□□ 2.26
TOP3A-220ENST00000585031 MROH1Q8NDA8 1641 aa29.18■■■□□ 2.26
TOP3A-220ENST00000585031 CEP152O94986 1710 aa29.15■■■□□ 2.26
TOP3A-220ENST00000585031 LTKP29376 864 aa29.15■■■□□ 2.26
TOP3A-220ENST00000585031 TSPY4P0CV99 314 aa29.13■■■□□ 2.25
TOP3A-220ENST00000585031 TSPY10P0CW01 314 aa29.13■■■□□ 2.25
TOP3A-220ENST00000585031 POTEAQ6S8J7 498 aa29.13■■■□□ 2.25
TOP3A-220ENST00000585031 SCAF11Q99590 1463 aaKnown RBP29.1■■■□□ 2.25
TOP3A-220ENST00000585031 MAST1Q9Y2H9 1570 aa29.09■■■□□ 2.25
TOP3A-220ENST00000585031 ARHGAP23Q9P227 1491 aa29.09■■■□□ 2.25
TOP3A-220ENST00000585031 EIF2AK4Q9P2K8 1649 aaKnown RBP29.08■■■□□ 2.25
TOP3A-220ENST00000585031 FAM135BQ49AJ0 1406 aa29.07■■■□□ 2.24
TOP3A-220ENST00000585031 SLIT1O75093 1534 aa29.05■■■□□ 2.24
TOP3A-220ENST00000585031 TXNDC2Q86VQ3 553 aa29.04■■■□□ 2.24
TOP3A-220ENST00000585031 PIK3C2BO00750 1634 aa28.97■■■□□ 2.23
TOP3A-220ENST00000585031 LRRC9Q6ZRR7 1453 aa28.95■■■□□ 2.22
TOP3A-220ENST00000585031 ARHGAP31Q2M1Z3 1444 aa28.93■■■□□ 2.22
TOP3A-220ENST00000585031 ROBO1Q9Y6N7 1651 aa28.93■■■□□ 2.22
TOP3A-220ENST00000585031 RBM33Q96EV2 1170 aaKnown RBP28.92■■■□□ 2.22
TOP3A-220ENST00000585031 DUOX2Q9NRD8 1548 aa28.92■■■□□ 2.22
TOP3A-220ENST00000585031 TMEM94Q12767 1356 aa28.91■■■□□ 2.22
TOP3A-220ENST00000585031 KANK4Q5T7N3 995 aaPredicted RBP28.91■■■□□ 2.22
TOP3A-220ENST00000585031 TMEM2Q9UHN6 1383 aa28.9■■■□□ 2.22
TOP3A-220ENST00000585031 PRDM15P57071 1507 aaPredicted RBP28.9■■■□□ 2.22
TOP3A-220ENST00000585031 EID1Q9Y6B2 187 aa28.9■■■□□ 2.22
TOP3A-220ENST00000585031 MAP3K1Q13233 1512 aa28.89■■■□□ 2.22
TOP3A-220ENST00000585031 SETD1AO15047 1707 aaKnown RBP28.88■■■□□ 2.21
TOP3A-220ENST00000585031 TET3O43151 1660 aa28.86■■■□□ 2.21
TOP3A-220ENST00000585031 KCNA6P17658 529 aa28.86■■■□□ 2.21
TOP3A-220ENST00000585031 SLC26A8Q96RN1 970 aa28.84■■■□□ 2.21
TOP3A-220ENST00000585031 KIF15Q9NS87 1388 aa28.83■■■□□ 2.21
TOP3A-220ENST00000585031 MYOM3Q5VTT5 1437 aa28.83■■■□□ 2.21
TOP3A-220ENST00000585031 IDI1Q13907 227 aa28.82■■■□□ 2.2
TOP3A-220ENST00000585031 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.82■■■□□ 2.2
TOP3A-220ENST00000585031 PROSER2Q86WR7 435 aaPredicted RBP28.81■■■□□ 2.2
TOP3A-220ENST00000585031 RRP7BPQ9NSQ0 103 aa28.81■■■□□ 2.2
TOP3A-220ENST00000585031 KDM5AP29375 1690 aaKnown RBP28.8■■■□□ 2.2
TOP3A-220ENST00000585031 CROCC2H7BZ55 1655 aa28.8■■■□□ 2.2
TOP3A-220ENST00000585031 EFCAB6Q5THR3 1501 aa28.79■■■□□ 2.2
TOP3A-220ENST00000585031 ABCC5O15440 1437 aa28.78■■■□□ 2.2
TOP3A-220ENST00000585031 ERBINQ96RT1 1412 aa28.77■■■□□ 2.2
TOP3A-220ENST00000585031 VPS8Q8N3P4 1428 aa28.77■■■□□ 2.2
TOP3A-220ENST00000585031 STAG3Q9UJ98 1225 aa28.76■■■□□ 2.19
TOP3A-220ENST00000585031 NWD1Q149M9 1564 aa28.75■■■□□ 2.19
TOP3A-220ENST00000585031 PHLPP1O60346 1717 aa28.74■■■□□ 2.19
TOP3A-220ENST00000585031 UPF1Q92900 1129 aaKnown RBP eCLIP28.74■■■□□ 2.19
TOP3A-220ENST00000585031 SLAIN2Q9P270 581 aa28.74■■■□□ 2.19
TOP3A-220ENST00000585031 JCADQ9P266 1359 aa28.73■■■□□ 2.19
TOP3A-220ENST00000585031 LMTK2Q8IWU2 1503 aa28.7■■■□□ 2.19
TOP3A-220ENST00000585031 NKTRP30414 1462 aaKnown RBP28.69■■■□□ 2.18
TOP3A-220ENST00000585031 NOS1P29475 1434 aa28.69■■■□□ 2.18
TOP3A-220ENST00000585031 CHD2O14647 1828 aaKnown RBP28.67■■■□□ 2.18
TOP3A-220ENST00000585031 MYO5BQ9ULV0 1848 aa28.67■■■□□ 2.18
TOP3A-220ENST00000585031 PTPN23Q9H3S7 1636 aa28.67■■■□□ 2.18
TOP3A-220ENST00000585031 ADGRB3O60242 1522 aa28.67■■■□□ 2.18
TOP3A-220ENST00000585031 COL16A1Q07092 1604 aaPredicted RBP28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms