RNA–Protein interactions for RNA: ENST00000583708.5

UBBP4-201, Transcript of ubiquitin B pseudogene 4, humanhuman

BASIC

Gene UBBP4, Length 689 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-201ENST00000583708 SETD5Q9C0A6 1442 aa13.9□□□□□ -0.18
UBBP4-201ENST00000583708 GGT6Q6P531 493 aa13.89□□□□□ -0.19
UBBP4-201ENST00000583708 WASHC2CQ9Y4E1 1318 aa13.88□□□□□ -0.19
UBBP4-201ENST00000583708 KDM5DQ9BY66 1539 aa13.86□□□□□ -0.19
UBBP4-201ENST00000583708 RNF17Q9BXT8 1623 aaKnown RBP13.86□□□□□ -0.19
UBBP4-201ENST00000583708 MLECQ14165 292 aa13.84□□□□□ -0.19
UBBP4-201ENST00000583708 GCC2Q8IWJ2 1684 aa13.83□□□□□ -0.2
UBBP4-201ENST00000583708 NUP155O75694 1391 aa13.83□□□□□ -0.2
UBBP4-201ENST00000583708 DEPDC5O75140 1603 aa13.82□□□□□ -0.2
UBBP4-201ENST00000583708 ARHGAP31Q2M1Z3 1444 aa13.82□□□□□ -0.2
UBBP4-201ENST00000583708 ADAMTSL3P82987 1691 aa13.82□□□□□ -0.2
UBBP4-201ENST00000583708 PRDM15P57071 1507 aaPredicted RBP13.82□□□□□ -0.2
UBBP4-201ENST00000583708 LMTK2Q8IWU2 1503 aa13.82□□□□□ -0.2
UBBP4-201ENST00000583708 KDM4FA0A1W2PPD8 638 aa13.82□□□□□ -0.2
UBBP4-201ENST00000583708 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.82□□□□□ -0.21e-6■□□□□ 9.9
UBBP4-201ENST00000583708 ZMYM3Q14202 1370 aa13.81□□□□□ -0.2
UBBP4-201ENST00000583708 RAB3GAP2Q9H2M9 1393 aa13.81□□□□□ -0.2
UBBP4-201ENST00000583708 VWDEQ8N2E2 1590 aa13.8□□□□□ -0.2
UBBP4-201ENST00000583708 TRIM52Q96A61 297 aa13.8□□□□□ -0.2
UBBP4-201ENST00000583708 UNC13BO14795 1591 aa13.79□□□□□ -0.2
UBBP4-201ENST00000583708 ZC3H13Q5T200 1668 aaKnown RBP13.79□□□□□ -0.2
UBBP4-201ENST00000583708 RPRD2Q5VT52 1461 aaKnown RBP13.79□□□□□ -0.2
UBBP4-201ENST00000583708 SIGLEC1Q9BZZ2 1709 aa13.78□□□□□ -0.2
UBBP4-201ENST00000583708 ABCC3O15438 1527 aa13.78□□□□□ -0.2
UBBP4-201ENST00000583708 MROH2AA6NES4 1674 aa13.77□□□□□ -0.21
UBBP4-201ENST00000583708 NPATQ14207 1427 aa13.77□□□□□ -0.21
UBBP4-201ENST00000583708 MROH1Q8NDA8 1641 aa13.77□□□□□ -0.21
UBBP4-201ENST00000583708 SLC4A1APQ9BWU0 796 aaKnown RBP13.76□□□□□ -0.21
UBBP4-201ENST00000583708 PZPP20742 1482 aa13.75□□□□□ -0.21
UBBP4-201ENST00000583708 PTPRMP28827 1452 aa13.75□□□□□ -0.21
UBBP4-201ENST00000583708 MPHOSPH9Q99550 1183 aa13.75□□□□□ -0.21
UBBP4-201ENST00000583708 IQGAP3Q86VI3 1631 aa13.75□□□□□ -0.21
UBBP4-201ENST00000583708 PCGF6Q9BYE7 350 aa13.74□□□□□ -0.21
UBBP4-201ENST00000583708 SLC52A1Q9NWF4 448 aa13.74□□□□□ -0.21
UBBP4-201ENST00000583708 MADDQ8WXG6 1647 aa13.74□□□□□ -0.21
UBBP4-201ENST00000583708 FER1L4A9Z1Z3 1794 aa13.73□□□□□ -0.21
UBBP4-201ENST00000583708 SETD1BQ9UPS6 1966 aaKnown RBP13.72□□□□□ -0.21
UBBP4-201ENST00000583708 TET3O43151 1660 aa13.72□□□□□ -0.21
UBBP4-201ENST00000583708 EFCAB6Q5THR3 1501 aa13.71□□□□□ -0.21
UBBP4-201ENST00000583708 PKD2Q13563 968 aa13.71□□□□□ -0.21
UBBP4-201ENST00000583708 CLTCQ00610 1675 aaKnown RBP13.7□□□□□ -0.22
UBBP4-201ENST00000583708 NOS1P29475 1434 aa13.69□□□□□ -0.22
UBBP4-201ENST00000583708 RIMS1Q86UR5 1692 aaKnown RBP13.69□□□□□ -0.22
UBBP4-201ENST00000583708 PTPRTO14522 1441 aa13.68□□□□□ -0.22
UBBP4-201ENST00000583708 CEBPAP49715 358 aaPredicted RBP13.68□□□□□ -0.22
UBBP4-201ENST00000583708 TNRQ92752 1358 aa13.68□□□□□ -0.22
UBBP4-201ENST00000583708 CAMSAP1Q5T5Y3 1602 aa13.68□□□□□ -0.22
UBBP4-201ENST00000583708 FBXO31Q5XUX0 539 aaPredicted RBP13.67□□□□□ -0.22
UBBP4-201ENST00000583708 ERVK-7P63135 1459 aa13.67□□□□□ -0.22
UBBP4-201ENST00000583708 NLRP1Q9C000 1473 aa13.67□□□□□ -0.22
UBBP4-201ENST00000583708 SPATA31D1Q6ZQQ2 1576 aa13.66□□□□□ -0.22
UBBP4-201ENST00000583708 AEBP2Q6ZN18 517 aaPredicted RBP13.66□□□□□ -0.22
UBBP4-201ENST00000583708 C3P01024 1663 aa13.66□□□□□ -0.22
UBBP4-201ENST00000583708 CLSPNQ9HAW4 1339 aa13.64□□□□□ -0.23
UBBP4-201ENST00000583708 CEP152O94986 1710 aa13.64□□□□□ -0.23
UBBP4-201ENST00000583708 THEMISQ8N1K5 641 aaPredicted RBP13.64□□□□□ -0.23
UBBP4-201ENST00000583708 UHRF1BP1Q6BDS2 1440 aa13.64□□□□□ -0.23
UBBP4-201ENST00000583708 HDGFP51858 240 aaKnown RBP13.63□□□□□ -0.23
UBBP4-201ENST00000583708 IDI1Q13907 227 aa13.62□□□□□ -0.23
UBBP4-201ENST00000583708 ANKRD30BQ9BXX2 1392 aa13.61□□□□□ -0.23
UBBP4-201ENST00000583708 E9PCH4 1651 aa13.61□□□□□ -0.23
UBBP4-201ENST00000583708 STAC3Q96MF2 364 aa13.61□□□□□ -0.23
UBBP4-201ENST00000583708 PREX1Q8TCU6 1659 aa13.6□□□□□ -0.23
UBBP4-201ENST00000583708 A2ML1A8K2U0 1454 aa13.6□□□□□ -0.23
UBBP4-201ENST00000583708 TRPM2O94759 1503 aa13.59□□□□□ -0.23
UBBP4-201ENST00000583708 CCDC144AA2RUR9 1427 aa13.59□□□□□ -0.23
UBBP4-201ENST00000583708 STAG3Q9UJ98 1225 aa13.59□□□□□ -0.23
UBBP4-201ENST00000583708 PLA2R1Q13018 1463 aa13.59□□□□□ -0.23
UBBP4-201ENST00000583708 DHX57Q6P158 1386 aaKnown RBP13.58□□□□□ -0.23
UBBP4-201ENST00000583708 PLPPR3Q6T4P5 718 aa13.58□□□□□ -0.24
UBBP4-201ENST00000583708 RPGRIP1LQ68CZ1 1315 aa13.58□□□□□ -0.24
UBBP4-201ENST00000583708 KDM5AP29375 1690 aaKnown RBP13.57□□□□□ -0.24
UBBP4-201ENST00000583708 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.57□□□□□ -0.24
UBBP4-201ENST00000583708 SYNMO15061 1565 aa13.55□□□□□ -0.24
UBBP4-201ENST00000583708 NEURL4Q96JN8 1562 aa13.55□□□□□ -0.24
UBBP4-201ENST00000583708 FOXD1Q16676 465 aa13.55□□□□□ -0.24
UBBP4-201ENST00000583708 TIMELESSQ9UNS1 1208 aa13.55□□□□□ -0.24
UBBP4-201ENST00000583708 SPHKAPQ2M3C7 1700 aa13.55□□□□□ -0.24
UBBP4-201ENST00000583708 PIK3C2BO00750 1634 aa13.54□□□□□ -0.24
UBBP4-201ENST00000583708 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
UBBP4-201ENST00000583708 EID1Q9Y6B2 187 aa13.54□□□□□ -0.24
UBBP4-201ENST00000583708 UGGT1Q9NYU2 1555 aa13.54□□□□□ -0.24
UBBP4-201ENST00000583708 CEP170BQ9Y4F5 1589 aaPredicted RBP13.54□□□□□ -0.24
UBBP4-201ENST00000583708 ANKLE2Q86XL3 938 aa13.53□□□□□ -0.24
UBBP4-201ENST00000583708 CFAP65Q6ZU64 1925 aaKnown RBP13.52□□□□□ -0.24
UBBP4-201ENST00000583708 MYO3AQ8NEV4 1616 aa13.52□□□□□ -0.25
UBBP4-201ENST00000583708 ZNF142P52746 1687 aaPredicted RBP13.52□□□□□ -0.25
UBBP4-201ENST00000583708 LMTK3Q96Q04 1460 aa13.51□□□□□ -0.25
UBBP4-201ENST00000583708 TMEM2Q9UHN6 1383 aa13.51□□□□□ -0.25
UBBP4-201ENST00000583708 VGFO15240 615 aaPredicted RBP13.51□□□□□ -0.25
UBBP4-201ENST00000583708 ADGRB3O60242 1522 aa13.5□□□□□ -0.25
UBBP4-201ENST00000583708 CHGAP10645 457 aaKnown RBP13.5□□□□□ -0.25
UBBP4-201ENST00000583708 CCER1Q8TC90 406 aaPredicted RBP13.5□□□□□ -0.25
UBBP4-201ENST00000583708 SLIT1O75093 1534 aa13.49□□□□□ -0.25
UBBP4-201ENST00000583708 ARHGAP23Q9P227 1491 aa13.49□□□□□ -0.25
UBBP4-201ENST00000583708 ZFYVE9O95405 1425 aa13.49□□□□□ -0.25
UBBP4-201ENST00000583708 SPATA31E1Q6ZUB1 1445 aa13.49□□□□□ -0.25
UBBP4-201ENST00000583708 ZNF326Q5BKZ1 582 aaKnown RBP13.48□□□□□ -0.25
UBBP4-201ENST00000583708 TXNDC2Q86VQ3 553 aa13.48□□□□□ -0.25
UBBP4-201ENST00000583708 TMEM131LA2VDJ0 1609 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms