RNA–Protein interactions for RNA: ENST00000583363.5

CDK5RAP3-228, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 558 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-228ENST00000583363 HRCP23327 699 aa24.42■■□□□ 1.5
CDK5RAP3-228ENST00000583363 CERKQ8TCT0 537 aa24.42■■□□□ 1.5
CDK5RAP3-228ENST00000583363 ABCA6Q8N139 1617 aa24.4■■□□□ 1.5
CDK5RAP3-228ENST00000583363 PLXNC1O60486 1568 aa24.4■■□□□ 1.5
CDK5RAP3-228ENST00000583363 REREQ9P2R6 1566 aa24.39■■□□□ 1.5
CDK5RAP3-228ENST00000583363 RAB3GAP2Q9H2M9 1393 aa24.38■■□□□ 1.49
CDK5RAP3-228ENST00000583363 DHX29Q7Z478 1369 aaKnown RBP24.37■■□□□ 1.49
CDK5RAP3-228ENST00000583363 STRCQ7RTU9 1775 aa24.37■■□□□ 1.49
CDK5RAP3-228ENST00000583363 ANKRD50Q9ULJ7 1429 aa24.36■■□□□ 1.49
CDK5RAP3-228ENST00000583363 DUOX2Q9NRD8 1548 aa24.35■■□□□ 1.49
CDK5RAP3-228ENST00000583363 SETD1BQ9UPS6 1966 aaKnown RBP24.34■■□□□ 1.49
CDK5RAP3-228ENST00000583363 GCC2Q8IWJ2 1684 aa24.34■■□□□ 1.49
CDK5RAP3-228ENST00000583363 UHRF1BP1Q6BDS2 1440 aa24.33■■□□□ 1.49
CDK5RAP3-228ENST00000583363 C3P01024 1663 aa24.33■■□□□ 1.49
CDK5RAP3-228ENST00000583363 A2MP01023 1474 aa24.32■■□□□ 1.48
CDK5RAP3-228ENST00000583363 AGLP35573 1532 aa24.31■■□□□ 1.48
CDK5RAP3-228ENST00000583363 ACIN1Q9UKV3 1341 aaKnown RBP24.3■■□□□ 1.48
CDK5RAP3-228ENST00000583363 ERBINQ96RT1 1412 aa24.29■■□□□ 1.48
CDK5RAP3-228ENST00000583363 KIF3BO15066 747 aa24.25■■□□□ 1.47
CDK5RAP3-228ENST00000583363 DMRT2Q9Y5R5 561 aa24.25■■□□□ 1.47
CDK5RAP3-228ENST00000583363 TRIM52Q96A61 297 aa24.24■■□□□ 1.47
CDK5RAP3-228ENST00000583363 ESF1Q9H501 851 aaKnown RBP24.21■■□□□ 1.47
CDK5RAP3-228ENST00000583363 PTPRTO14522 1441 aa24.18■■□□□ 1.46
CDK5RAP3-228ENST00000583363 CNTLNQ9NXG0 1405 aa24.18■■□□□ 1.46
CDK5RAP3-228ENST00000583363 EIF2AK4Q9P2K8 1649 aaKnown RBP24.17■■□□□ 1.46
CDK5RAP3-228ENST00000583363 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.17■■□□□ 1.467e-9■■□□□ 13.5
CDK5RAP3-228ENST00000583363 NUP155O75694 1391 aa24.16■■□□□ 1.46
CDK5RAP3-228ENST00000583363 GGT6Q6P531 493 aa24.14■■□□□ 1.45
CDK5RAP3-228ENST00000583363 MPHOSPH9Q99550 1183 aa24.14■■□□□ 1.45
CDK5RAP3-228ENST00000583363 MROH2AA6NES4 1674 aa24.14■■□□□ 1.45
CDK5RAP3-228ENST00000583363 DHX57Q6P158 1386 aaKnown RBP24.12■■□□□ 1.45
CDK5RAP3-228ENST00000583363 UNC13BO14795 1591 aa24.11■■□□□ 1.45
CDK5RAP3-228ENST00000583363 LTBP4Q8N2S1 1624 aa24.1■■□□□ 1.45
CDK5RAP3-228ENST00000583363 SLC4A1APQ9BWU0 796 aaKnown RBP24.1■■□□□ 1.45
CDK5RAP3-228ENST00000583363 PPP6R1Q9UPN7 881 aa24.09■■□□□ 1.45
CDK5RAP3-228ENST00000583363 DEPDC5O75140 1603 aa24.09■■□□□ 1.45
CDK5RAP3-228ENST00000583363 KDM5DQ9BY66 1539 aa24.09■■□□□ 1.45
CDK5RAP3-228ENST00000583363 NPATQ14207 1427 aa24.09■■□□□ 1.45
CDK5RAP3-228ENST00000583363 PZPP20742 1482 aa24.08■■□□□ 1.45
CDK5RAP3-228ENST00000583363 ZMYM3Q14202 1370 aa24.08■■□□□ 1.45
CDK5RAP3-228ENST00000583363 KANK1Q14678 1352 aa24.08■■□□□ 1.45
CDK5RAP3-228ENST00000583363 RNF17Q9BXT8 1623 aaKnown RBP24.08■■□□□ 1.45
CDK5RAP3-228ENST00000583363 CAMSAP1Q5T5Y3 1602 aa24.06■■□□□ 1.44
CDK5RAP3-228ENST00000583363 MROH1Q8NDA8 1641 aa24.06■■□□□ 1.44
CDK5RAP3-228ENST00000583363 CLTCQ00610 1675 aaKnown RBP24.06■■□□□ 1.44
CDK5RAP3-228ENST00000583363 CCER1Q8TC90 406 aaPredicted RBP24.05■■□□□ 1.44
CDK5RAP3-228ENST00000583363 VWDEQ8N2E2 1590 aa24.04■■□□□ 1.44
CDK5RAP3-228ENST00000583363 PRDM15P57071 1507 aaPredicted RBP24.04■■□□□ 1.44
CDK5RAP3-228ENST00000583363 FAM135AQ9P2D6 1515 aa24.03■■□□□ 1.44
CDK5RAP3-228ENST00000583363 WASHC2CQ9Y4E1 1318 aa24.03■■□□□ 1.44
CDK5RAP3-228ENST00000583363 DISP3Q9P2K9 1392 aa24.03■■□□□ 1.44
CDK5RAP3-228ENST00000583363 PKD2Q13563 968 aa24.02■■□□□ 1.44
CDK5RAP3-228ENST00000583363 IQGAP3Q86VI3 1631 aa24.02■■□□□ 1.44
CDK5RAP3-228ENST00000583363 MYO3AQ8NEV4 1616 aa24■■□□□ 1.43
CDK5RAP3-228ENST00000583363 IQSEC2Q5JU85 1478 aa24■■□□□ 1.43
CDK5RAP3-228ENST00000583363 ILDR2Q71H61 639 aa23.99■■□□□ 1.43
CDK5RAP3-228ENST00000583363 ZNF142P52746 1687 aaPredicted RBP23.99■■□□□ 1.43
CDK5RAP3-228ENST00000583363 FOXD1Q16676 465 aa23.98■■□□□ 1.43
CDK5RAP3-228ENST00000583363 NCKAP5LQ9HCH0 1330 aa23.98■■□□□ 1.43
CDK5RAP3-228ENST00000583363 LMTK2Q8IWU2 1503 aa23.98■■□□□ 1.43
CDK5RAP3-228ENST00000583363 CEP170BQ9Y4F5 1589 aaPredicted RBP23.95■■□□□ 1.43
CDK5RAP3-228ENST00000583363 ABCC3O15438 1527 aa23.95■■□□□ 1.43
CDK5RAP3-228ENST00000583363 CLSPNQ9HAW4 1339 aa23.95■■□□□ 1.42
CDK5RAP3-228ENST00000583363 PLA2R1Q13018 1463 aa23.94■■□□□ 1.42
CDK5RAP3-228ENST00000583363 ZNF335Q9H4Z2 1342 aaPredicted RBP23.92■■□□□ 1.42
CDK5RAP3-228ENST00000583363 SPATA31D1Q6ZQQ2 1576 aa23.91■■□□□ 1.42
CDK5RAP3-228ENST00000583363 TET3O43151 1660 aa23.91■■□□□ 1.42
CDK5RAP3-228ENST00000583363 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
CDK5RAP3-228ENST00000583363 CEP152O94986 1710 aa23.9■■□□□ 1.42
CDK5RAP3-228ENST00000583363 ARHGAP31Q2M1Z3 1444 aa23.88■■□□□ 1.41
CDK5RAP3-228ENST00000583363 ZC3H13Q5T200 1668 aaKnown RBP23.88■■□□□ 1.41
CDK5RAP3-228ENST00000583363 EFCAB6Q5THR3 1501 aa23.86■■□□□ 1.41
CDK5RAP3-228ENST00000583363 E9PCH4 1651 aa23.86■■□□□ 1.41
CDK5RAP3-228ENST00000583363 SOCS7O14512 581 aa23.85■■□□□ 1.41
CDK5RAP3-228ENST00000583363 SIN3AQ96ST3 1273 aa23.85■■□□□ 1.41
CDK5RAP3-228ENST00000583363 RPRD2Q5VT52 1461 aaKnown RBP23.84■■□□□ 1.41
CDK5RAP3-228ENST00000583363 A2ML1A8K2U0 1454 aa23.83■■□□□ 1.41
CDK5RAP3-228ENST00000583363 UBAP1LF5GYI3 381 aa23.8■■□□□ 1.4
CDK5RAP3-228ENST00000583363 FBXO31Q5XUX0 539 aaPredicted RBP23.79■■□□□ 1.4
CDK5RAP3-228ENST00000583363 NEUROD1Q13562 356 aa23.78■■□□□ 1.4
CDK5RAP3-228ENST00000583363 NOS1P29475 1434 aa23.77■■□□□ 1.4
CDK5RAP3-228ENST00000583363 CFAP65Q6ZU64 1925 aaKnown RBP23.77■■□□□ 1.4
CDK5RAP3-228ENST00000583363 POLR1AO95602 1720 aaPredicted RBP23.76■■□□□ 1.39
CDK5RAP3-228ENST00000583363 TNRQ92752 1358 aa23.76■■□□□ 1.39
CDK5RAP3-228ENST00000583363 NEURL4Q96JN8 1562 aa23.74■■□□□ 1.39
CDK5RAP3-228ENST00000583363 CCDC144AA2RUR9 1427 aa23.72■■□□□ 1.39
CDK5RAP3-228ENST00000583363 TRPM2O94759 1503 aa23.72■■□□□ 1.39
CDK5RAP3-228ENST00000583363 SPHKAPQ2M3C7 1700 aa23.72■■□□□ 1.39
CDK5RAP3-228ENST00000583363 ERVK-7P63135 1459 aa23.71■■□□□ 1.39
CDK5RAP3-228ENST00000583363 SLC52A1Q9NWF4 448 aa23.7■■□□□ 1.38
CDK5RAP3-228ENST00000583363 ZEB1P37275 1124 aaPredicted RBP23.68■■□□□ 1.38
CDK5RAP3-228ENST00000583363 IDI1Q13907 227 aa23.68■■□□□ 1.38
CDK5RAP3-228ENST00000583363 TIMELESSQ9UNS1 1208 aa23.68■■□□□ 1.38
CDK5RAP3-228ENST00000583363 SYNMO15061 1565 aa23.65■■□□□ 1.38
CDK5RAP3-228ENST00000583363 CPS1P31327 1500 aa23.65■■□□□ 1.38
CDK5RAP3-228ENST00000583363 NLRP1Q9C000 1473 aa23.63■■□□□ 1.37
CDK5RAP3-228ENST00000583363 CLTCL1P53675 1640 aa23.63■■□□□ 1.37
CDK5RAP3-228ENST00000583363 ANKLE2Q86XL3 938 aa23.63■■□□□ 1.37
CDK5RAP3-228ENST00000583363 UGGT1Q9NYU2 1555 aa23.63■■□□□ 1.37
CDK5RAP3-228ENST00000583363 THEMISQ8N1K5 641 aaPredicted RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms