RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 PODXL2Q9NZ53 605 aa18.59■□□□□ 0.57
ITGB4-207ENST00000580542 ANKRD30AQ9BXX3 1397 aa18.58■□□□□ 0.57
ITGB4-207ENST00000580542 NPM1P06748 294 aaKnown RBP eCLIP18.58■□□□□ 0.56
ITGB4-207ENST00000580542 GLIPR1L2Q4G1C9 344 aa18.58■□□□□ 0.56
ITGB4-207ENST00000580542 RRP7BPQ9NSQ0 103 aa18.58■□□□□ 0.56
ITGB4-207ENST00000580542 GLI2P10070 1586 aa18.57■□□□□ 0.56
ITGB4-207ENST00000580542 NEFMP07197 916 aa18.57■□□□□ 0.56
ITGB4-207ENST00000580542 DENND4BO75064 1496 aaPredicted RBP18.56■□□□□ 0.56
ITGB4-207ENST00000580542 EFCAB2Q5VUJ9 269 aa18.56■□□□□ 0.56
ITGB4-207ENST00000580542 CFAP74Q9C0B2 1584 aa18.56■□□□□ 0.56
ITGB4-207ENST00000580542 FANCAO15360 1455 aa18.55■□□□□ 0.56
ITGB4-207ENST00000580542 HNRNPMP52272 730 aaKnown RBP eCLIP18.54■□□□□ 0.56
ITGB4-207ENST00000580542 MAP3K4Q9Y6R4 1608 aa18.54■□□□□ 0.56
ITGB4-207ENST00000580542 RSPH6AQ9H0K4 717 aa18.53■□□□□ 0.56
ITGB4-207ENST00000580542 WASHC2CQ9Y4E1 1318 aa18.53■□□□□ 0.56
ITGB4-207ENST00000580542 KDM5DQ9BY66 1539 aa18.52■□□□□ 0.56
ITGB4-207ENST00000580542 USP35Q9P2H5 1018 aa18.51■□□□□ 0.55
ITGB4-207ENST00000580542 TSPY4P0CV99 314 aa18.5■□□□□ 0.55
ITGB4-207ENST00000580542 TSPY10P0CW01 314 aa18.5■□□□□ 0.55
ITGB4-207ENST00000580542 LAS1LQ9Y4W2 734 aaKnown RBP18.5■□□□□ 0.55
ITGB4-207ENST00000580542 RTEL1-TNFRSF6BF6WH68 1400 aa18.5■□□□□ 0.55
ITGB4-207ENST00000580542 ANKRD50Q9ULJ7 1429 aa18.5■□□□□ 0.55
ITGB4-207ENST00000580542 INO80Q9ULG1 1556 aaPredicted RBP18.5■□□□□ 0.55
ITGB4-207ENST00000580542 TRAPPC8Q9Y2L5 1435 aa18.5■□□□□ 0.55
ITGB4-207ENST00000580542 CYB5RLQ6IPT4 315 aa18.49■□□□□ 0.55
ITGB4-207ENST00000580542 ZFYVE16Q7Z3T8 1539 aa18.48■□□□□ 0.55
ITGB4-207ENST00000580542 KIF15Q9NS87 1388 aa18.48■□□□□ 0.55
ITGB4-207ENST00000580542 VSIG10Q8N0Z9 540 aa18.47■□□□□ 0.55
ITGB4-207ENST00000580542 ZMYND15Q9H091 742 aa18.47■□□□□ 0.55
ITGB4-207ENST00000580542 CD109Q6YHK3 1445 aa18.47■□□□□ 0.55
ITGB4-207ENST00000580542 DIP2BQ9P265 1576 aa18.47■□□□□ 0.55
ITGB4-207ENST00000580542 PZPP20742 1482 aa18.46■□□□□ 0.55
ITGB4-207ENST00000580542 ADGRL1O94910 1474 aa18.46■□□□□ 0.55
ITGB4-207ENST00000580542 UNC13BO14795 1591 aa18.46■□□□□ 0.55
ITGB4-207ENST00000580542 DUOX2Q9NRD8 1548 aa18.46■□□□□ 0.55
ITGB4-207ENST00000580542 NEO1Q92859 1461 aa18.45■□□□□ 0.54
ITGB4-207ENST00000580542 KDM5CP41229 1560 aa18.44■□□□□ 0.54
ITGB4-207ENST00000580542 ERBINQ96RT1 1412 aa18.43■□□□□ 0.54
ITGB4-207ENST00000580542 MAGI2Q86UL8 1455 aa18.42■□□□□ 0.54
ITGB4-207ENST00000580542 ATP7AQ04656 1500 aa18.41■□□□□ 0.54
ITGB4-207ENST00000580542 DAXXQ9UER7 740 aaPredicted RBP18.41■□□□□ 0.54
ITGB4-207ENST00000580542 SCAPERQ9BY12 1400 aa18.4■□□□□ 0.54
ITGB4-207ENST00000580542 NPM2Q86SE8 214 aaKnown RBP18.4■□□□□ 0.54
ITGB4-207ENST00000580542 MPHOSPH9Q99550 1183 aa18.4■□□□□ 0.54
ITGB4-207ENST00000580542 ZNF518AQ6AHZ1 1483 aa18.4■□□□□ 0.54
ITGB4-207ENST00000580542 PPRC1Q5VV67 1664 aaKnown RBP18.39■□□□□ 0.53
ITGB4-207ENST00000580542 KIDINS220Q9ULH0 1771 aa18.39■□□□□ 0.53
ITGB4-207ENST00000580542 GSE1Q14687 1217 aa18.39■□□□□ 0.53
ITGB4-207ENST00000580542 POGZQ7Z3K3 1410 aa18.38■□□□□ 0.53
ITGB4-207ENST00000580542 HSPA5P11021 654 aaKnown RBP18.37■□□□□ 0.53
ITGB4-207ENST00000580542 DEPDC5O75140 1603 aa18.37■□□□□ 0.53
ITGB4-207ENST00000580542 PPM1GO15355 546 aaPredicted RBP18.37■□□□□ 0.53
ITGB4-207ENST00000580542 IQGAP3Q86VI3 1631 aa18.37■□□□□ 0.53
ITGB4-207ENST00000580542 EIF2AK4Q9P2K8 1649 aaKnown RBP18.37■□□□□ 0.53
ITGB4-207ENST00000580542 KIF13AQ9H1H9 1805 aa18.36■□□□□ 0.53
ITGB4-207ENST00000580542 ANKRD30BQ9BXX2 1392 aa18.35■□□□□ 0.53
ITGB4-207ENST00000580542 RICTORQ6R327 1708 aa18.35■□□□□ 0.53
ITGB4-207ENST00000580542 MLH3Q9UHC1 1453 aa18.35■□□□□ 0.53
ITGB4-207ENST00000580542 SPAG9O60271 1321 aaKnown RBP18.34■□□□□ 0.53
ITGB4-207ENST00000580542 AFAP1Q8N556 730 aa18.34■□□□□ 0.53
ITGB4-207ENST00000580542 HECW2Q9P2P5 1572 aa18.33■□□□□ 0.52
ITGB4-207ENST00000580542 BCORL1Q5H9F3 1711 aa18.33■□□□□ 0.52
ITGB4-207ENST00000580542 FAM135AQ9P2D6 1515 aa18.33■□□□□ 0.52
ITGB4-207ENST00000580542 FAM43AQ8N2R8 423 aa18.3■□□□□ 0.52
ITGB4-207ENST00000580542 RPRD2Q5VT52 1461 aaKnown RBP18.3■□□□□ 0.52
ITGB4-207ENST00000580542 VWDEQ8N2E2 1590 aa18.3■□□□□ 0.52
ITGB4-207ENST00000580542 FRMPD1Q5SYB0 1578 aa18.29■□□□□ 0.52
ITGB4-207ENST00000580542 NUP155O75694 1391 aa18.29■□□□□ 0.52
ITGB4-207ENST00000580542 CNTLNQ9NXG0 1405 aa18.29■□□□□ 0.52
ITGB4-207ENST00000580542 EIF4G2P78344 907 aaKnown RBP eCLIP18.29■□□□□ 0.52
ITGB4-207ENST00000580542 SLC4A1APQ9BWU0 796 aaKnown RBP18.28■□□□□ 0.52
ITGB4-207ENST00000580542 ZMYM4Q5VZL5 1548 aa18.28■□□□□ 0.52
ITGB4-207ENST00000580542 MROH1Q8NDA8 1641 aa18.27■□□□□ 0.52
ITGB4-207ENST00000580542 DHX29Q7Z478 1369 aaKnown RBP18.26■□□□□ 0.51
ITGB4-207ENST00000580542 L3MBTL2Q969R5 705 aa18.26■□□□□ 0.51
ITGB4-207ENST00000580542 ABCA6Q8N139 1617 aa18.26■□□□□ 0.51
ITGB4-207ENST00000580542 RNF17Q9BXT8 1623 aaKnown RBP18.26■□□□□ 0.51
ITGB4-207ENST00000580542 PRDM15P57071 1507 aaPredicted RBP18.26■□□□□ 0.51
ITGB4-207ENST00000580542 TEX14Q8IWB6 1497 aa18.26■□□□□ 0.51
ITGB4-207ENST00000580542 FRAT1Q92837 279 aaPredicted RBP18.26■□□□□ 0.51
ITGB4-207ENST00000580542 FOXD1Q16676 465 aa18.25■□□□□ 0.51
ITGB4-207ENST00000580542 CCDC184Q52MB2 194 aa18.25■□□□□ 0.51
ITGB4-207ENST00000580542 FAM69CQ0P6D2 419 aa18.23■□□□□ 0.51
ITGB4-207ENST00000580542 ATP10AO60312 1499 aa18.23■□□□□ 0.51
ITGB4-207ENST00000580542 CCDC7Q96M83 1385 aa18.22■□□□□ 0.51
ITGB4-207ENST00000580542 DIP2CQ9Y2E4 1556 aa18.22■□□□□ 0.51
ITGB4-207ENST00000580542 A2MP01023 1474 aa18.21■□□□□ 0.51
ITGB4-207ENST00000580542 TSPOAP1O95153 1857 aa18.21■□□□□ 0.51
ITGB4-207ENST00000580542 PKD2Q13563 968 aa18.21■□□□□ 0.51
ITGB4-207ENST00000580542 TET3O43151 1660 aa18.2■□□□□ 0.5
ITGB4-207ENST00000580542 NBPF8Q3BBV2 869 aa18.19■□□□□ 0.5
ITGB4-207ENST00000580542 PRKRIP1Q9H875 184 aaPredicted RBP18.19■□□□□ 0.5
ITGB4-207ENST00000580542 LMTK2Q8IWU2 1503 aa18.19■□□□□ 0.5
ITGB4-207ENST00000580542 E9PCH4 1651 aa18.18■□□□□ 0.5
ITGB4-207ENST00000580542 HSP90AA2PQ14568 343 aaPredicted RBP18.18■□□□□ 0.5
ITGB4-207ENST00000580542 FAM9BQ8IZU0 186 aa18.18■□□□□ 0.5
ITGB4-207ENST00000580542 REREQ9P2R6 1566 aa18.17■□□□□ 0.5
ITGB4-207ENST00000580542 NFKBIBQ15653 356 aa18.17■□□□□ 0.5
ITGB4-207ENST00000580542 PLA2R1Q13018 1463 aa18.17■□□□□ 0.5
ITGB4-207ENST00000580542 SPATA31E1Q6ZUB1 1445 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms