RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 CHIC2Q9UKJ5 165 aa29.68■■■□□ 2.34
SS18-208ENST00000577751 NCOA1Q15788 1441 aa29.68■■■□□ 2.34
SS18-208ENST00000577751 RNF17Q9BXT8 1623 aaKnown RBP29.66■■■□□ 2.34
SS18-208ENST00000577751 ZMYM3Q14202 1370 aa29.65■■■□□ 2.34
SS18-208ENST00000577751 PTPRKQ15262 1439 aa29.64■■■□□ 2.34
SS18-208ENST00000577751 RRBP1Q9P2E9 1410 aaKnown RBP29.64■■■□□ 2.34
SS18-208ENST00000577751 FAM135AQ9P2D6 1515 aa29.64■■■□□ 2.34
SS18-208ENST00000577751 ERBINQ96RT1 1412 aa29.63■■■□□ 2.33
SS18-208ENST00000577751 SETD1BQ9UPS6 1966 aaKnown RBP29.61■■■□□ 2.33
SS18-208ENST00000577751 LMTK3Q96Q04 1460 aa29.61■■■□□ 2.33
SS18-208ENST00000577751 MROH1Q8NDA8 1641 aa29.6■■■□□ 2.33
SS18-208ENST00000577751 KDM5DQ9BY66 1539 aa29.59■■■□□ 2.33
SS18-208ENST00000577751 PREX1Q8TCU6 1659 aa29.57■■■□□ 2.32
SS18-208ENST00000577751 WASHC2CQ9Y4E1 1318 aa29.55■■■□□ 2.32
SS18-208ENST00000577751 NPATQ14207 1427 aa29.54■■■□□ 2.32
SS18-208ENST00000577751 ROCK1Q13464 1354 aa29.54■■■□□ 2.32
SS18-208ENST00000577751 DEPDC5O75140 1603 aa29.53■■■□□ 2.32
SS18-208ENST00000577751 ZC3H13Q5T200 1668 aaKnown RBP29.53■■■□□ 2.32
SS18-208ENST00000577751 PRDM15P57071 1507 aaPredicted RBP29.51■■■□□ 2.32
SS18-208ENST00000577751 ABCC3O15438 1527 aa29.5■■■□□ 2.31
SS18-208ENST00000577751 ANKRD50Q9ULJ7 1429 aa29.48■■■□□ 2.31
SS18-208ENST00000577751 ITGAEP38570 1179 aa29.48■■■□□ 2.31
SS18-208ENST00000577751 UHRF1BP1Q6BDS2 1440 aa29.47■■■□□ 2.31
SS18-208ENST00000577751 PZPP20742 1482 aa29.46■■■□□ 2.31
SS18-208ENST00000577751 CEP152O94986 1710 aa29.45■■■□□ 2.31
SS18-208ENST00000577751 HSPA2P54652 639 aa29.42■■■□□ 2.3
SS18-208ENST00000577751 VWDEQ8N2E2 1590 aa29.42■■■□□ 2.3
SS18-208ENST00000577751 CAMSAP1Q5T5Y3 1602 aa29.41■■■□□ 2.3
SS18-208ENST00000577751 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.4■■■□□ 2.3
SS18-208ENST00000577751 FBXO31Q5XUX0 539 aaPredicted RBP29.39■■■□□ 2.3
SS18-208ENST00000577751 KANK1Q14678 1352 aa29.38■■■□□ 2.29
SS18-208ENST00000577751 MYO3AQ8NEV4 1616 aa29.38■■■□□ 2.29
SS18-208ENST00000577751 LMTK2Q8IWU2 1503 aa29.36■■■□□ 2.29
SS18-208ENST00000577751 ARHGAP31Q2M1Z3 1444 aa29.35■■■□□ 2.29
SS18-208ENST00000577751 ZNF142P52746 1687 aaPredicted RBP29.34■■■□□ 2.29
SS18-208ENST00000577751 TNRQ92752 1358 aa29.33■■■□□ 2.29
SS18-208ENST00000577751 UNC13BO14795 1591 aa29.33■■■□□ 2.29
SS18-208ENST00000577751 SPATA31D1Q6ZQQ2 1576 aa29.33■■■□□ 2.29
SS18-208ENST00000577751 CEP170BQ9Y4F5 1589 aaPredicted RBP29.3■■■□□ 2.28
SS18-208ENST00000577751 ERVK-7P63135 1459 aa29.29■■■□□ 2.28
SS18-208ENST00000577751 CFAP65Q6ZU64 1925 aaKnown RBP29.28■■■□□ 2.28
SS18-208ENST00000577751 NAIPQ13075 1403 aa29.27■■■□□ 2.28
SS18-208ENST00000577751 GCC2Q8IWJ2 1684 aa29.26■■■□□ 2.27
SS18-208ENST00000577751 A2ML1A8K2U0 1454 aa29.26■■■□□ 2.27
SS18-208ENST00000577751 STRCQ7RTU9 1775 aa29.26■■■□□ 2.27
SS18-208ENST00000577751 EFCAB6Q5THR3 1501 aa29.25■■■□□ 2.27
SS18-208ENST00000577751 NLRP1Q9C000 1473 aa29.23■■■□□ 2.27
SS18-208ENST00000577751 HFM1A2PYH4 1435 aa29.22■■■□□ 2.27
SS18-208ENST00000577751 TET3O43151 1660 aa29.21■■■□□ 2.27
SS18-208ENST00000577751 IQGAP3Q86VI3 1631 aa29.21■■■□□ 2.27
SS18-208ENST00000577751 RPRD2Q5VT52 1461 aaKnown RBP29.17■■■□□ 2.26
SS18-208ENST00000577751 NUP155O75694 1391 aa29.17■■■□□ 2.26
SS18-208ENST00000577751 PLA2R1Q13018 1463 aa29.17■■■□□ 2.26
SS18-208ENST00000577751 NOS1P29475 1434 aa29.15■■■□□ 2.26
SS18-208ENST00000577751 UGGT1Q9NYU2 1555 aa29.13■■■□□ 2.25
SS18-208ENST00000577751 E9PCH4 1651 aa29.12■■■□□ 2.25
SS18-208ENST00000577751 SYNMO15061 1565 aa29.11■■■□□ 2.25
SS18-208ENST00000577751 DMRT2Q9Y5R5 561 aa29.11■■■□□ 2.25
SS18-208ENST00000577751 THEMISQ8N1K5 641 aaPredicted RBP29.1■■■□□ 2.25
SS18-208ENST00000577751 UBR1Q8IWV7 1749 aa29.08■■■□□ 2.25
SS18-208ENST00000577751 PTPRTO14522 1441 aa29.08■■■□□ 2.25
SS18-208ENST00000577751 PKD2Q13563 968 aa29.07■■■□□ 2.24
SS18-208ENST00000577751 NCKAP5LQ9HCH0 1330 aa29.06■■■□□ 2.24
SS18-208ENST00000577751 PIK3C2BO00750 1634 aa29.05■■■□□ 2.24
SS18-208ENST00000577751 IDI1Q13907 227 aa29.04■■■□□ 2.24
SS18-208ENST00000577751 KDM5AP29375 1690 aaKnown RBP29.02■■■□□ 2.24
SS18-208ENST00000577751 SLC52A1Q9NWF4 448 aa29.02■■■□□ 2.24
SS18-208ENST00000577751 POLR1AO95602 1720 aaPredicted RBP29.01■■■□□ 2.23
SS18-208ENST00000577751 NEURL4Q96JN8 1562 aa28.97■■■□□ 2.23
SS18-208ENST00000577751 ANKLE2Q86XL3 938 aa28.97■■■□□ 2.23
SS18-208ENST00000577751 TRIM52Q96A61 297 aa28.96■■■□□ 2.23
SS18-208ENST00000577751 ARHGAP23Q9P227 1491 aa28.96■■■□□ 2.23
SS18-208ENST00000577751 SLIT1O75093 1534 aa28.95■■■□□ 2.23
SS18-208ENST00000577751 SETD5Q9C0A6 1442 aa28.94■■■□□ 2.22
SS18-208ENST00000577751 MED14O60244 1454 aa28.93■■■□□ 2.22
SS18-208ENST00000577751 ADGRB3O60242 1522 aa28.93■■■□□ 2.22
SS18-208ENST00000577751 SPHKAPQ2M3C7 1700 aa28.92■■■□□ 2.22
SS18-208ENST00000577751 STAG3Q9UJ98 1225 aa28.91■■■□□ 2.22
SS18-208ENST00000577751 TMEM2Q9UHN6 1383 aa28.89■■■□□ 2.22
SS18-208ENST00000577751 TMEM131LA2VDJ0 1609 aa28.89■■■□□ 2.22
SS18-208ENST00000577751 ACIN1Q9UKV3 1341 aaKnown RBP28.89■■■□□ 2.21
SS18-208ENST00000577751 SLC4A1APQ9BWU0 796 aaKnown RBP28.87■■■□□ 2.21
SS18-208ENST00000577751 NPHP4O75161 1426 aaPredicted RBP28.86■■■□□ 2.21
SS18-208ENST00000577751 SCAF11Q99590 1463 aaKnown RBP28.86■■■□□ 2.21
SS18-208ENST00000577751 MYO5BQ9ULV0 1848 aa28.86■■■□□ 2.21
SS18-208ENST00000577751 LTKP29376 864 aa28.86■■■□□ 2.21
SS18-208ENST00000577751 TXNDC2Q86VQ3 553 aa28.84■■■□□ 2.21
SS18-208ENST00000577751 IQGAP1P46940 1657 aa28.83■■■□□ 2.21
SS18-208ENST00000577751 RAB3GAP2Q9H2M9 1393 aa28.83■■■□□ 2.21
SS18-208ENST00000577751 TRPM2O94759 1503 aa28.83■■■□□ 2.21
SS18-208ENST00000577751 LTBP4Q8N2S1 1624 aa28.82■■■□□ 2.2
SS18-208ENST00000577751 EID1Q9Y6B2 187 aa28.81■■■□□ 2.2
SS18-208ENST00000577751 MPHOSPH9Q99550 1183 aa28.8■■■□□ 2.2
SS18-208ENST00000577751 ZFYVE9O95405 1425 aa28.77■■■□□ 2.2
SS18-208ENST00000577751 CLTCL1P53675 1640 aa28.77■■■□□ 2.2
SS18-208ENST00000577751 ZNF335Q9H4Z2 1342 aaPredicted RBP28.77■■■□□ 2.2
SS18-208ENST00000577751 HRCP23327 699 aa28.76■■■□□ 2.19
SS18-208ENST00000577751 CERKQ8TCT0 537 aa28.76■■■□□ 2.19
SS18-208ENST00000577751 CHGAP10645 457 aaKnown RBP28.75■■■□□ 2.19
SS18-208ENST00000577751 RIMS2Q9UQ26 1411 aa28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms