RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 LRRC7Q96NW7 1537 aa15.34■□□□□ 0.05
CRLF3-202ENST00000577725 CDK11AQ9UQ88 783 aaPredicted RBP15.34■□□□□ 0.05
CRLF3-202ENST00000577725 ANKLE2Q86XL3 938 aa15.33■□□□□ 0.04
CRLF3-202ENST00000577725 CLTCQ00610 1675 aaKnown RBP15.32■□□□□ 0.04
CRLF3-202ENST00000577725 RRBP1Q9P2E9 1410 aaKnown RBP15.31■□□□□ 0.04
CRLF3-202ENST00000577725 NPHP4O75161 1426 aaPredicted RBP15.3■□□□□ 0.04
CRLF3-202ENST00000577725 KIDINS220Q9ULH0 1771 aa15.29■□□□□ 0.04
CRLF3-202ENST00000577725 SYNMO15061 1565 aa15.29■□□□□ 0.04
CRLF3-202ENST00000577725 MED14O60244 1454 aa15.29■□□□□ 0.04
CRLF3-202ENST00000577725 CCNB3Q8WWL7 1395 aa15.29■□□□□ 0.04
CRLF3-202ENST00000577725 ABCC1P33527 1531 aa15.27■□□□□ 0.04
CRLF3-202ENST00000577725 FAM135BQ49AJ0 1406 aa15.27■□□□□ 0.04
CRLF3-202ENST00000577725 MYOM3Q5VTT5 1437 aa15.27■□□□□ 0.04
CRLF3-202ENST00000577725 FGD6Q6ZV73 1430 aa15.27■□□□□ 0.04
CRLF3-202ENST00000577725 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.26■□□□□ 0.03
CRLF3-202ENST00000577725 FAM50AQ14320 339 aaKnown RBP15.26■□□□□ 0.03
CRLF3-202ENST00000577725 GGT6Q6P531 493 aa15.25■□□□□ 0.03
CRLF3-202ENST00000577725 THEMISQ8N1K5 641 aaPredicted RBP15.25■□□□□ 0.03
CRLF3-202ENST00000577725 ITGAEP38570 1179 aa15.24■□□□□ 0.03
CRLF3-202ENST00000577725 DEPDC5O75140 1603 aa15.24■□□□□ 0.03
CRLF3-202ENST00000577725 TNRQ92752 1358 aa15.24■□□□□ 0.03
CRLF3-202ENST00000577725 TRIM52Q96A61 297 aa15.23■□□□□ 0.03
CRLF3-202ENST00000577725 PTPN23Q9H3S7 1636 aa15.23■□□□□ 0.03
CRLF3-202ENST00000577725 ITSN2Q9NZM3 1697 aa15.22■□□□□ 0.03
CRLF3-202ENST00000577725 CDC42BPAQ5VT25 1732 aa15.21■□□□□ 0.03
CRLF3-202ENST00000577725 GPATCH8Q9UKJ3 1502 aaKnown RBP15.21■□□□□ 0.03
CRLF3-202ENST00000577725 STRCP1A6NGW2 1772 aa15.21■□□□□ 0.02
CRLF3-202ENST00000577725 PLXNC1O60486 1568 aa15.19■□□□□ 0.02
CRLF3-202ENST00000577725 SAMD9LQ8IVG5 1584 aa15.19■□□□□ 0.02
CRLF3-202ENST00000577725 SPAG9O60271 1321 aaKnown RBP15.19■□□□□ 0.02
CRLF3-202ENST00000577725 IQGAP1P46940 1657 aa15.19■□□□□ 0.02
CRLF3-202ENST00000577725 ZNF772Q68DY9 489 aaPredicted RBP15.19■□□□□ 0.02
CRLF3-202ENST00000577725 A2MP01023 1474 aa15.19■□□□□ 0.02
CRLF3-202ENST00000577725 FAM135AQ9P2D6 1515 aa15.18■□□□□ 0.02
CRLF3-202ENST00000577725 CDC42BPBQ9Y5S2 1711 aa15.18■□□□□ 0.02
CRLF3-202ENST00000577725 FBXO31Q5XUX0 539 aaPredicted RBP15.17■□□□□ 0.02
CRLF3-202ENST00000577725 MIA2Q96PC5 1412 aa15.17■□□□□ 0.02
CRLF3-202ENST00000577725 ZNF644Q9H582 1327 aaPredicted RBP15.17■□□□□ 0.02
CRLF3-202ENST00000577725 UGGT1Q9NYU2 1555 aa15.16■□□□□ 0.02
CRLF3-202ENST00000577725 ZNF777Q9ULD5 760 aaPredicted RBP15.16■□□□□ 0.02
CRLF3-202ENST00000577725 PREX2Q70Z35 1606 aa15.16■□□□□ 0.02
CRLF3-202ENST00000577725 NLRP1Q9C000 1473 aa15.15■□□□□ 0.02
CRLF3-202ENST00000577725 JCADQ9P266 1359 aa15.15■□□□□ 0.02
CRLF3-202ENST00000577725 CFDP1Q9UEE9 299 aaPredicted RBP15.15■□□□□ 0.02
CRLF3-202ENST00000577725 CAMSAP2Q08AD1 1489 aa15.14■□□□□ 0.01
CRLF3-202ENST00000577725 RXRBP28702 533 aa15.14■□□□□ 0.01
CRLF3-202ENST00000577725 ATP7AQ04656 1500 aa15.13■□□□□ 0.01
CRLF3-202ENST00000577725 PZPP20742 1482 aa15.13■□□□□ 0.01
CRLF3-202ENST00000577725 CDK12Q9NYV4 1490 aaPredicted RBP15.13■□□□□ 0.01
CRLF3-202ENST00000577725 FOXD1Q16676 465 aa15.12■□□□□ 0.01
CRLF3-202ENST00000577725 KDM5DQ9BY66 1539 aa15.12■□□□□ 0.01
CRLF3-202ENST00000577725 ROBO1Q9Y6N7 1651 aa15.11■□□□□ 0.01
CRLF3-202ENST00000577725 MEX3CQ5U5Q3 659 aaKnown RBP15.1■□□□□ 0.01
CRLF3-202ENST00000577725 ZRANB1Q9UGI0 708 aa15.1■□□□□ 0.01
CRLF3-202ENST00000577725 SYCP2Q9BX26 1530 aa15.08■□□□□ 0.01
CRLF3-202ENST00000577725 SPATA31A6Q5VVP1 1343 aa15.08■□□□□ 0
CRLF3-202ENST00000577725 INO80Q9ULG1 1556 aaPredicted RBP15.07■□□□□ 0
CRLF3-202ENST00000577725 HNRNPMP52272 730 aaKnown RBP eCLIP15.07■□□□□ 0
CRLF3-202ENST00000577725 CHIC2Q9UKJ5 165 aa15.07■□□□□ 0
CRLF3-202ENST00000577725 LRP6O75581 1613 aa15.06■□□□□ 0
CRLF3-202ENST00000577725 ABCC5O15440 1437 aa15.06■□□□□ 0
CRLF3-202ENST00000577725 DAPK1P53355 1430 aa15.06■□□□□ 0
CRLF3-202ENST00000577725 ZC3H13Q5T200 1668 aaKnown RBP15.06■□□□□ 0
CRLF3-202ENST00000577725 XIRP1Q702N8 1843 aaKnown RBP15.05■□□□□ -0
CRLF3-202ENST00000577725 TMEM94Q12767 1356 aa15.04■□□□□ -0
CRLF3-202ENST00000577725 CROCC2H7BZ55 1655 aa15.03■□□□□ -0
CRLF3-202ENST00000577725 KIAA1107Q9UPP5 1409 aa15.02■□□□□ -0
CRLF3-202ENST00000577725 WASHC2CQ9Y4E1 1318 aa15.02■□□□□ -0
CRLF3-202ENST00000577725 SETBP1Q9Y6X0 1596 aa15.02□□□□□ -0.01
CRLF3-202ENST00000577725 SCAF11Q99590 1463 aaKnown RBP15.01□□□□□ -0.01
CRLF3-202ENST00000577725 PHLPP1O60346 1717 aa15.01□□□□□ -0.01
CRLF3-202ENST00000577725 RRP7BPQ9NSQ0 103 aa15.01□□□□□ -0.01
CRLF3-202ENST00000577725 SETD5Q9C0A6 1442 aa15□□□□□ -0.01
CRLF3-202ENST00000577725 ADGBQ8N7X0 1667 aa15□□□□□ -0.01
CRLF3-202ENST00000577725 MBD5Q9P267 1494 aa15□□□□□ -0.01
CRLF3-202ENST00000577725 RAB3GAP2Q9H2M9 1393 aa14.99□□□□□ -0.01
CRLF3-202ENST00000577725 ARHGEF5Q12774 1597 aa14.99□□□□□ -0.01
CRLF3-202ENST00000577725 RBM33Q96EV2 1170 aaKnown RBP14.99□□□□□ -0.01
CRLF3-202ENST00000577725 PLEKHH2Q8IVE3 1493 aa14.99□□□□□ -0.01
CRLF3-202ENST00000577725 DHX29Q7Z478 1369 aaKnown RBP14.98□□□□□ -0.01
CRLF3-202ENST00000577725 NUTM2BA6NNL0 878 aaPredicted RBP14.98□□□□□ -0.01
CRLF3-202ENST00000577725 NUTM2EB1AL46 878 aaPredicted RBP14.98□□□□□ -0.01
CRLF3-202ENST00000577725 NUTM2DQ5VT03 806 aaPredicted RBP14.98□□□□□ -0.01
CRLF3-202ENST00000577725 NUTM2AQ8IVF1 878 aaPredicted RBP14.98□□□□□ -0.01
CRLF3-202ENST00000577725 SLAIN2Q9P270 581 aa14.98□□□□□ -0.01
CRLF3-202ENST00000577725 RGS12O14924 1447 aa14.98□□□□□ -0.01
CRLF3-202ENST00000577725 CCDC141Q6ZP82 1450 aa14.97□□□□□ -0.01
CRLF3-202ENST00000577725 KIF3BO15066 747 aa14.97□□□□□ -0.01
CRLF3-202ENST00000577725 GCC2Q8IWJ2 1684 aa14.97□□□□□ -0.01
CRLF3-202ENST00000577725 COL16A1Q07092 1604 aaPredicted RBP14.96□□□□□ -0.01
CRLF3-202ENST00000577725 KCNA4P22459 653 aa14.96□□□□□ -0.01
CRLF3-202ENST00000577725 NAIPQ13075 1403 aa14.96□□□□□ -0.01
CRLF3-202ENST00000577725 TXNDC2Q86VQ3 553 aa14.96□□□□□ -0.01
CRLF3-202ENST00000577725 HFM1A2PYH4 1435 aa14.95□□□□□ -0.02
CRLF3-202ENST00000577725 LTKP29376 864 aa14.95□□□□□ -0.02
CRLF3-202ENST00000577725 PROSER2Q86WR7 435 aaPredicted RBP14.95□□□□□ -0.02
CRLF3-202ENST00000577725 MSH6P52701 1360 aa14.95□□□□□ -0.02
CRLF3-202ENST00000577725 ATAD2Q6PL18 1390 aa14.95□□□□□ -0.02
CRLF3-202ENST00000577725 KCNA6P17658 529 aa14.94□□□□□ -0.02
CRLF3-202ENST00000577725 CCER1Q8TC90 406 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms