RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 CPS1P31327 1500 aa21.7■■□□□ 1.06
CCDC40-216ENST00000576241 CLTCQ00610 1675 aaKnown RBP21.69■■□□□ 1.06
CCDC40-216ENST00000576241 RTEL1-TNFRSF6BF6WH68 1400 aa21.68■■□□□ 1.06
CCDC40-216ENST00000576241 PTPRKQ15262 1439 aa21.68■■□□□ 1.06
CCDC40-216ENST00000576241 CAMSAP2Q08AD1 1489 aa21.68■■□□□ 1.06
CCDC40-216ENST00000576241 CCDC141Q6ZP82 1450 aa21.67■■□□□ 1.06
CCDC40-216ENST00000576241 GGT6Q6P531 493 aa21.67■■□□□ 1.06
CCDC40-216ENST00000576241 ADGBQ8N7X0 1667 aa21.66■■□□□ 1.06
CCDC40-216ENST00000576241 LRRC9Q6ZRR7 1453 aa21.66■■□□□ 1.06
CCDC40-216ENST00000576241 SHANK2Q9UPX8 1470 aa21.65■■□□□ 1.06
CCDC40-216ENST00000576241 RSPH4AQ5TD94 716 aa21.65■■□□□ 1.06
CCDC40-216ENST00000576241 SENP3Q9H4L4 574 aaPredicted RBP21.65■■□□□ 1.06
CCDC40-216ENST00000576241 ALKQ9UM73 1620 aa21.65■■□□□ 1.06
CCDC40-216ENST00000576241 RGS17Q9UGC6 210 aaPredicted RBP21.62■■□□□ 1.05
CCDC40-216ENST00000576241 DHX29Q7Z478 1369 aaKnown RBP21.61■■□□□ 1.05
CCDC40-216ENST00000576241 MAP3K1Q13233 1512 aa21.61■■□□□ 1.05
CCDC40-216ENST00000576241 DNMT1P26358 1616 aaKnown RBP21.61■■□□□ 1.05
CCDC40-216ENST00000576241 POLR1AO95602 1720 aaPredicted RBP21.6■■□□□ 1.05
CCDC40-216ENST00000576241 A2ML1A8K2U0 1454 aa21.59■■□□□ 1.05
CCDC40-216ENST00000576241 NEURL4Q96JN8 1562 aa21.59■■□□□ 1.05
CCDC40-216ENST00000576241 TSPY4P0CV99 314 aa21.58■■□□□ 1.05
CCDC40-216ENST00000576241 TSPY10P0CW01 314 aa21.58■■□□□ 1.05
CCDC40-216ENST00000576241 ARHGEF5Q12774 1597 aa21.57■■□□□ 1.04
CCDC40-216ENST00000576241 KANK4Q5T7N3 995 aaPredicted RBP21.57■■□□□ 1.04
CCDC40-216ENST00000576241 KIF3BO15066 747 aa21.56■■□□□ 1.04
CCDC40-216ENST00000576241 VWDEQ8N2E2 1590 aa21.55■■□□□ 1.04
CCDC40-216ENST00000576241 APLP2Q06481 763 aa21.54■■□□□ 1.04
CCDC40-216ENST00000576241 MYOM3Q5VTT5 1437 aa21.53■■□□□ 1.04
CCDC40-216ENST00000576241 MIA2Q96PC5 1412 aa21.52■■□□□ 1.04
CCDC40-216ENST00000576241 KDM5DQ9BY66 1539 aa21.5■■□□□ 1.03
CCDC40-216ENST00000576241 FAM135AQ9P2D6 1515 aa21.5■■□□□ 1.03
CCDC40-216ENST00000576241 WASHC2CQ9Y4E1 1318 aa21.48■■□□□ 1.03
CCDC40-216ENST00000576241 ANKLE2Q86XL3 938 aa21.47■■□□□ 1.03
CCDC40-216ENST00000576241 MAST1Q9Y2H9 1570 aa21.46■■□□□ 1.03
CCDC40-216ENST00000576241 POTEAQ6S8J7 498 aa21.45■■□□□ 1.02
CCDC40-216ENST00000576241 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.45■■□□□ 1.02
CCDC40-216ENST00000576241 FBXO31Q5XUX0 539 aaPredicted RBP21.44■■□□□ 1.02
CCDC40-216ENST00000576241 PZPP20742 1482 aa21.44■■□□□ 1.02
CCDC40-216ENST00000576241 STRCP1A6NGW2 1772 aa21.43■■□□□ 1.02
CCDC40-216ENST00000576241 TNRQ92752 1358 aa21.43■■□□□ 1.02
CCDC40-216ENST00000576241 NPHP4O75161 1426 aaPredicted RBP21.43■■□□□ 1.02
CCDC40-216ENST00000576241 LRRC7Q96NW7 1537 aa21.43■■□□□ 1.02
CCDC40-216ENST00000576241 RNF17Q9BXT8 1623 aaKnown RBP21.42■■□□□ 1.02
CCDC40-216ENST00000576241 MED14O60244 1454 aa21.4■■□□□ 1.02
CCDC40-216ENST00000576241 DEPDC5O75140 1603 aa21.38■■□□□ 1.01
CCDC40-216ENST00000576241 THEMISQ8N1K5 641 aaPredicted RBP21.38■■□□□ 1.01
CCDC40-216ENST00000576241 EIF2AK4Q9P2K8 1649 aaKnown RBP21.37■■□□□ 1.01
CCDC40-216ENST00000576241 IQGAP1P46940 1657 aa21.37■■□□□ 1.01
CCDC40-216ENST00000576241 SETD1AO15047 1707 aaKnown RBP21.36■■□□□ 1.01
CCDC40-216ENST00000576241 PTPN23Q9H3S7 1636 aa21.36■■□□□ 1.01
CCDC40-216ENST00000576241 SYNMO15061 1565 aa21.36■■□□□ 1.01
CCDC40-216ENST00000576241 DUOX2Q9NRD8 1548 aa21.35■■□□□ 1.01
CCDC40-216ENST00000576241 FGD6Q6ZV73 1430 aa21.35■■□□□ 1.01
CCDC40-216ENST00000576241 ABCC5O15440 1437 aa21.34■■□□□ 1.01
CCDC40-216ENST00000576241 KIF15Q9NS87 1388 aa21.34■■□□□ 1.01
CCDC40-216ENST00000576241 ABCC3O15438 1527 aa21.34■■□□□ 1.01
CCDC40-216ENST00000576241 NLRP1Q9C000 1473 aa21.33■■□□□ 1.01
CCDC40-216ENST00000576241 UGGT1Q9NYU2 1555 aa21.33■■□□□ 1.01
CCDC40-216ENST00000576241 ZC3H13Q5T200 1668 aaKnown RBP21.33■■□□□ 1
CCDC40-216ENST00000576241 DAPK1P53355 1430 aa21.31■■□□□ 1
CCDC40-216ENST00000576241 RRP7BPQ9NSQ0 103 aa21.31■■□□□ 1
CCDC40-216ENST00000576241 CROCC2H7BZ55 1655 aa21.31■■□□□ 1
CCDC40-216ENST00000576241 ERBINQ96RT1 1412 aa21.29■■□□□ 1
CCDC40-216ENST00000576241 MROH1Q8NDA8 1641 aa21.29■■□□□ 1
CCDC40-216ENST00000576241 ERVK-7P63135 1459 aa21.26■□□□□ 0.99
CCDC40-216ENST00000576241 ANKRD30AQ9BXX3 1397 aa21.25■□□□□ 0.99
CCDC40-216ENST00000576241 XIRP1Q702N8 1843 aaKnown RBP21.25■□□□□ 0.99
CCDC40-216ENST00000576241 PRDM15P57071 1507 aaPredicted RBP21.24■□□□□ 0.99
CCDC40-216ENST00000576241 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.23■□□□□ 0.99
CCDC40-216ENST00000576241 CHIC2Q9UKJ5 165 aa21.23■□□□□ 0.99
CCDC40-216ENST00000576241 KANK1Q14678 1352 aa21.23■□□□□ 0.99
CCDC40-216ENST00000576241 FAM135BQ49AJ0 1406 aa21.22■□□□□ 0.99
CCDC40-216ENST00000576241 CEP152O94986 1710 aa21.22■□□□□ 0.99
CCDC40-216ENST00000576241 FAM50AQ14320 339 aaKnown RBP21.2■□□□□ 0.98
CCDC40-216ENST00000576241 ARHGAP31Q2M1Z3 1444 aa21.2■□□□□ 0.98
CCDC40-216ENST00000576241 UPF1Q92900 1129 aaKnown RBP eCLIP21.19■□□□□ 0.98
CCDC40-216ENST00000576241 ADGRL2O95490 1459 aa21.14■□□□□ 0.98
CCDC40-216ENST00000576241 ROBO1Q9Y6N7 1651 aa21.14■□□□□ 0.97
CCDC40-216ENST00000576241 SCAF11Q99590 1463 aaKnown RBP21.12■□□□□ 0.97
CCDC40-216ENST00000576241 LMTK2Q8IWU2 1503 aa21.11■□□□□ 0.97
CCDC40-216ENST00000576241 UBR1Q8IWV7 1749 aa21.09■□□□□ 0.97
CCDC40-216ENST00000576241 LTKP29376 864 aa21.09■□□□□ 0.97
CCDC40-216ENST00000576241 STAG3Q9UJ98 1225 aa21.08■□□□□ 0.97
CCDC40-216ENST00000576241 ANKRD50Q9ULJ7 1429 aa21.08■□□□□ 0.97
CCDC40-216ENST00000576241 CFAP65Q6ZU64 1925 aaKnown RBP21.08■□□□□ 0.96
CCDC40-216ENST00000576241 TXNDC2Q86VQ3 553 aa21.07■□□□□ 0.96
CCDC40-216ENST00000576241 TRIM52Q96A61 297 aa21.07■□□□□ 0.96
CCDC40-216ENST00000576241 TMEM94Q12767 1356 aa21.07■□□□□ 0.96
CCDC40-216ENST00000576241 EID1Q9Y6B2 187 aa21.06■□□□□ 0.96
CCDC40-216ENST00000576241 SLIT1O75093 1534 aa21.05■□□□□ 0.96
CCDC40-216ENST00000576241 ARHGAP23Q9P227 1491 aa21.05■□□□□ 0.96
CCDC40-216ENST00000576241 EFCAB6Q5THR3 1501 aa21.04■□□□□ 0.96
CCDC40-216ENST00000576241 JCADQ9P266 1359 aa21.03■□□□□ 0.96
CCDC40-216ENST00000576241 RBM33Q96EV2 1170 aaKnown RBP21.03■□□□□ 0.96
CCDC40-216ENST00000576241 PHLPP1O60346 1717 aa21.03■□□□□ 0.96
CCDC40-216ENST00000576241 PIK3C2BO00750 1634 aa21.03■□□□□ 0.96
CCDC40-216ENST00000576241 SRCAPQ6ZRS2 3230 aa21.02■□□□□ 0.96
CCDC40-216ENST00000576241 TMEM2Q9UHN6 1383 aa21.01■□□□□ 0.95
CCDC40-216ENST00000576241 IDI1Q13907 227 aa21.01■□□□□ 0.95
CCDC40-216ENST00000576241 NOS1P29475 1434 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms