RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 CPS1P31327 1500 aa14.46□□□□□ -0.09
SMG6-218ENST00000575454 CDC42BPAQ5VT25 1732 aa14.46□□□□□ -0.1
SMG6-218ENST00000575454 LRRIQ1Q96JM4 1722 aa14.46□□□□□ -0.1
SMG6-218ENST00000575454 SHANK2Q9UPX8 1470 aa14.45□□□□□ -0.1
SMG6-218ENST00000575454 MYO3AQ8NEV4 1616 aa14.45□□□□□ -0.1
SMG6-218ENST00000575454 TSPY4P0CV99 314 aa14.45□□□□□ -0.1
SMG6-218ENST00000575454 TSPY10P0CW01 314 aa14.45□□□□□ -0.1
SMG6-218ENST00000575454 CEP162Q5TB80 1403 aa14.44□□□□□ -0.1
SMG6-218ENST00000575454 MIA2Q96PC5 1412 aa14.44□□□□□ -0.1
SMG6-218ENST00000575454 PHF23Q9BUL5 403 aaPredicted RBP14.44□□□□□ -0.1
SMG6-218ENST00000575454 PZPP20742 1482 aa14.44□□□□□ -0.1
SMG6-218ENST00000575454 ZNF142P52746 1687 aaPredicted RBP14.43□□□□□ -0.1
SMG6-218ENST00000575454 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.43□□□□□ -0.1
SMG6-218ENST00000575454 SUPT6HQ7KZ85 1726 aaKnown RBP14.43□□□□□ -0.1
SMG6-218ENST00000575454 CLTCQ00610 1675 aaKnown RBP14.42□□□□□ -0.1
SMG6-218ENST00000575454 FAM135AQ9P2D6 1515 aa14.42□□□□□ -0.1
SMG6-218ENST00000575454 NLRP1Q9C000 1473 aa14.42□□□□□ -0.1
SMG6-218ENST00000575454 CCDC141Q6ZP82 1450 aa14.4□□□□□ -0.1
SMG6-218ENST00000575454 DNMT1P26358 1616 aaKnown RBP14.4□□□□□ -0.1
SMG6-218ENST00000575454 KDM5DQ9BY66 1539 aa14.4□□□□□ -0.1
SMG6-218ENST00000575454 NPHP4O75161 1426 aaPredicted RBP14.4□□□□□ -0.1
SMG6-218ENST00000575454 MED14O60244 1454 aa14.38□□□□□ -0.11
SMG6-218ENST00000575454 EHBP1L1Q8N3D4 1523 aa14.38□□□□□ -0.11
SMG6-218ENST00000575454 ADGBQ8N7X0 1667 aa14.36□□□□□ -0.11
SMG6-218ENST00000575454 TIAM1Q13009 1591 aa14.35□□□□□ -0.11
SMG6-218ENST00000575454 UGGT1Q9NYU2 1555 aa14.35□□□□□ -0.11
SMG6-218ENST00000575454 NEURL4Q96JN8 1562 aa14.34□□□□□ -0.11
SMG6-218ENST00000575454 CAMSAP2Q08AD1 1489 aa14.32□□□□□ -0.12
SMG6-218ENST00000575454 NCOA2Q15596 1464 aa14.32□□□□□ -0.12
SMG6-218ENST00000575454 VWDEQ8N2E2 1590 aa14.32□□□□□ -0.12
SMG6-218ENST00000575454 EID1Q9Y6B2 187 aa14.3□□□□□ -0.12
SMG6-218ENST00000575454 TXNDC2Q86VQ3 553 aa14.29□□□□□ -0.12
SMG6-218ENST00000575454 LRRC7Q96NW7 1537 aa14.29□□□□□ -0.12
SMG6-218ENST00000575454 DEPDC5O75140 1603 aa14.28□□□□□ -0.12
SMG6-218ENST00000575454 ALKQ9UM73 1620 aa14.27□□□□□ -0.12
SMG6-218ENST00000575454 SENP3Q9H4L4 574 aaPredicted RBP14.27□□□□□ -0.13
SMG6-218ENST00000575454 ARHGEF5Q12774 1597 aa14.26□□□□□ -0.13
SMG6-218ENST00000575454 ABCC3O15438 1527 aa14.25□□□□□ -0.13
SMG6-218ENST00000575454 ERVK-7P63135 1459 aa14.25□□□□□ -0.13
SMG6-218ENST00000575454 LTKP29376 864 aa14.25□□□□□ -0.13
SMG6-218ENST00000575454 SCAF11Q99590 1463 aaKnown RBP14.25□□□□□ -0.13
SMG6-218ENST00000575454 STAG3Q9UJ98 1225 aa14.23□□□□□ -0.13
SMG6-218ENST00000575454 POLR1AO95602 1720 aaPredicted RBP14.23□□□□□ -0.13
SMG6-218ENST00000575454 ARHGAP31Q2M1Z3 1444 aa14.22□□□□□ -0.13
SMG6-218ENST00000575454 FAM135BQ49AJ0 1406 aa14.22□□□□□ -0.13
SMG6-218ENST00000575454 MYOM3Q5VTT5 1437 aa14.22□□□□□ -0.13
SMG6-218ENST00000575454 SRCAPQ6ZRS2 3230 aa14.21□□□□□ -0.13
SMG6-218ENST00000575454 RGS17Q9UGC6 210 aaPredicted RBP14.21□□□□□ -0.13
SMG6-218ENST00000575454 LRRC9Q6ZRR7 1453 aa14.2□□□□□ -0.14
SMG6-218ENST00000575454 KCNA6P17658 529 aa14.2□□□□□ -0.14
SMG6-218ENST00000575454 TMEM2Q9UHN6 1383 aa14.2□□□□□ -0.14
SMG6-218ENST00000575454 IQGAP1P46940 1657 aa14.2□□□□□ -0.14
SMG6-218ENST00000575454 ARHGAP23Q9P227 1491 aa14.19□□□□□ -0.14
SMG6-218ENST00000575454 SYNMO15061 1565 aa14.19□□□□□ -0.14
SMG6-218ENST00000575454 KANK1Q14678 1352 aa14.19□□□□□ -0.14
SMG6-218ENST00000575454 KIF15Q9NS87 1388 aa14.19□□□□□ -0.14
SMG6-218ENST00000575454 RNF17Q9BXT8 1623 aaKnown RBP14.19□□□□□ -0.14
SMG6-218ENST00000575454 SLIT1O75093 1534 aa14.18□□□□□ -0.14
SMG6-218ENST00000575454 MAST1Q9Y2H9 1570 aa14.17□□□□□ -0.14
SMG6-218ENST00000575454 DUOX2Q9NRD8 1548 aa14.17□□□□□ -0.14
SMG6-218ENST00000575454 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.17□□□□□ -0.146e-8■■■■□ 25.6
SMG6-218ENST00000575454 RRP7BPQ9NSQ0 103 aa14.17□□□□□ -0.14
SMG6-218ENST00000575454 TMEM94Q12767 1356 aa14.17□□□□□ -0.14
SMG6-218ENST00000575454 VPS8Q8N3P4 1428 aa14.16□□□□□ -0.14
SMG6-218ENST00000575454 KANK4Q5T7N3 995 aaPredicted RBP14.16□□□□□ -0.14
SMG6-218ENST00000575454 PROSER2Q86WR7 435 aaPredicted RBP14.16□□□□□ -0.14
SMG6-218ENST00000575454 ZC3H13Q5T200 1668 aaKnown RBP14.16□□□□□ -0.14
SMG6-218ENST00000575454 ERBINQ96RT1 1412 aa14.15□□□□□ -0.14
SMG6-218ENST00000575454 EIF2AK4Q9P2K8 1649 aaKnown RBP14.15□□□□□ -0.14
SMG6-218ENST00000575454 IDI1Q13907 227 aa14.14□□□□□ -0.15
SMG6-218ENST00000575454 SLC52A1Q9NWF4 448 aa14.14□□□□□ -0.15
SMG6-218ENST00000575454 HDGFP51858 240 aaKnown RBP14.13□□□□□ -0.15
SMG6-218ENST00000575454 POTEAQ6S8J7 498 aa14.13□□□□□ -0.15
SMG6-218ENST00000575454 SLC26A8Q96RN1 970 aa14.13□□□□□ -0.15
SMG6-218ENST00000575454 MAP3K1Q13233 1512 aa14.12□□□□□ -0.15
SMG6-218ENST00000575454 APLP2Q06481 763 aa14.12□□□□□ -0.15
SMG6-218ENST00000575454 BCANQ96GW7 911 aa14.12□□□□□ -0.15
SMG6-218ENST00000575454 SLAIN2Q9P270 581 aa14.11□□□□□ -0.15
SMG6-218ENST00000575454 ABCC5O15440 1437 aa14.1□□□□□ -0.15
SMG6-218ENST00000575454 STRCP1A6NGW2 1772 aa14.1□□□□□ -0.15
SMG6-218ENST00000575454 MROH1Q8NDA8 1641 aa14.1□□□□□ -0.15
SMG6-218ENST00000575454 MSH6P52701 1360 aa14.09□□□□□ -0.15
SMG6-218ENST00000575454 ANKRD30AQ9BXX3 1397 aa14.09□□□□□ -0.15
SMG6-218ENST00000575454 PRDM15P57071 1507 aaPredicted RBP14.09□□□□□ -0.15
SMG6-218ENST00000575454 SETD1AO15047 1707 aaKnown RBP14.08□□□□□ -0.16
SMG6-218ENST00000575454 JCADQ9P266 1359 aa14.08□□□□□ -0.16
SMG6-218ENST00000575454 UBR1Q8IWV7 1749 aa14.07□□□□□ -0.16
SMG6-218ENST00000575454 EFCAB6Q5THR3 1501 aa14.07□□□□□ -0.16
SMG6-218ENST00000575454 RBM33Q96EV2 1170 aaKnown RBP14.07□□□□□ -0.16
SMG6-218ENST00000575454 PPP1R15AO75807 674 aaPredicted RBP14.06□□□□□ -0.16
SMG6-218ENST00000575454 NKTRP30414 1462 aaKnown RBP14.06□□□□□ -0.16
SMG6-218ENST00000575454 LMTK2Q8IWU2 1503 aa14.05□□□□□ -0.16
SMG6-218ENST00000575454 CHIC2Q9UKJ5 165 aa14.05□□□□□ -0.16
SMG6-218ENST00000575454 DAPK1P53355 1430 aa14.05□□□□□ -0.16
SMG6-218ENST00000575454 LOC105371045A0A1W2PR82 267 aa14.04□□□□□ -0.16
SMG6-218ENST00000575454 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.04□□□□□ -0.16
SMG6-218ENST00000575454 NOS1P29475 1434 aa14.04□□□□□ -0.16
SMG6-218ENST00000575454 ZNF772Q68DY9 489 aaPredicted RBP14.03□□□□□ -0.16
SMG6-218ENST00000575454 TBX22Q9Y458 520 aa14.03□□□□□ -0.16
SMG6-218ENST00000575454 NCOA3Q9Y6Q9 1424 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms