RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ITGAEP38570 1179 aa14.48□□□□□ -0.09
CCDC40-214ENST00000575431 PTPRMP28827 1452 aa14.48□□□□□ -0.09
CCDC40-214ENST00000575431 RIMS1Q86UR5 1692 aaKnown RBP14.48□□□□□ -0.09
CCDC40-214ENST00000575431 RNF17Q9BXT8 1623 aaKnown RBP14.46□□□□□ -0.09
CCDC40-214ENST00000575431 ANKRD50Q9ULJ7 1429 aa14.46□□□□□ -0.09
CCDC40-214ENST00000575431 MROH2AA6NES4 1674 aa14.46□□□□□ -0.1
CCDC40-214ENST00000575431 ZC3H13Q5T200 1668 aaKnown RBP14.42□□□□□ -0.1
CCDC40-214ENST00000575431 WASHC2CQ9Y4E1 1318 aa14.42□□□□□ -0.1
CCDC40-214ENST00000575431 KDM5DQ9BY66 1539 aa14.42□□□□□ -0.1
CCDC40-214ENST00000575431 DEPDC5O75140 1603 aa14.42□□□□□ -0.1
CCDC40-214ENST00000575431 ZMYM3Q14202 1370 aa14.42□□□□□ -0.1
CCDC40-214ENST00000575431 KANK1Q14678 1352 aa14.42□□□□□ -0.1
CCDC40-214ENST00000575431 CLTCQ00610 1675 aaKnown RBP14.42□□□□□ -0.1
CCDC40-214ENST00000575431 PRDM15P57071 1507 aaPredicted RBP14.41□□□□□ -0.1
CCDC40-214ENST00000575431 MROH1Q8NDA8 1641 aa14.4□□□□□ -0.1
CCDC40-214ENST00000575431 C3P01024 1663 aa14.39□□□□□ -0.11
CCDC40-214ENST00000575431 HFM1A2PYH4 1435 aa14.39□□□□□ -0.11
CCDC40-214ENST00000575431 ACIN1Q9UKV3 1341 aaKnown RBP14.39□□□□□ -0.11
CCDC40-214ENST00000575431 GCC2Q8IWJ2 1684 aa14.38□□□□□ -0.11
CCDC40-214ENST00000575431 NPATQ14207 1427 aa14.38□□□□□ -0.11
CCDC40-214ENST00000575431 ABCC3O15438 1527 aa14.37□□□□□ -0.11
CCDC40-214ENST00000575431 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.37□□□□□ -0.11
CCDC40-214ENST00000575431 NAIPQ13075 1403 aa14.37□□□□□ -0.11
CCDC40-214ENST00000575431 UNC13BO14795 1591 aa14.36□□□□□ -0.11
CCDC40-214ENST00000575431 CEBPAP49715 358 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-214ENST00000575431 SETD1BQ9UPS6 1966 aaKnown RBP14.36□□□□□ -0.11
CCDC40-214ENST00000575431 VWDEQ8N2E2 1590 aa14.35□□□□□ -0.11
CCDC40-214ENST00000575431 PLPPR3Q6T4P5 718 aa14.35□□□□□ -0.11
CCDC40-214ENST00000575431 LMTK2Q8IWU2 1503 aa14.35□□□□□ -0.11
CCDC40-214ENST00000575431 PZPP20742 1482 aa14.34□□□□□ -0.11
CCDC40-214ENST00000575431 CAMSAP1Q5T5Y3 1602 aa14.33□□□□□ -0.11
CCDC40-214ENST00000575431 ARHGAP31Q2M1Z3 1444 aa14.33□□□□□ -0.11
CCDC40-214ENST00000575431 CEP152O94986 1710 aa14.33□□□□□ -0.12
CCDC40-214ENST00000575431 PREX1Q8TCU6 1659 aa14.32□□□□□ -0.12
CCDC40-214ENST00000575431 NUP155O75694 1391 aa14.31□□□□□ -0.12
CCDC40-214ENST00000575431 IQGAP3Q86VI3 1631 aa14.3□□□□□ -0.12
CCDC40-214ENST00000575431 UHRF1BP1Q6BDS2 1440 aa14.3□□□□□ -0.12
CCDC40-214ENST00000575431 TET3O43151 1660 aa14.3□□□□□ -0.12
CCDC40-214ENST00000575431 RPRD2Q5VT52 1461 aaKnown RBP14.29□□□□□ -0.12
CCDC40-214ENST00000575431 EFCAB6Q5THR3 1501 aa14.28□□□□□ -0.12
CCDC40-214ENST00000575431 SPATA31D1Q6ZQQ2 1576 aa14.28□□□□□ -0.12
CCDC40-214ENST00000575431 TNRQ92752 1358 aa14.28□□□□□ -0.12
CCDC40-214ENST00000575431 SETD5Q9C0A6 1442 aa14.28□□□□□ -0.12
CCDC40-214ENST00000575431 LMTK3Q96Q04 1460 aa14.26□□□□□ -0.13
CCDC40-214ENST00000575431 FBXO31Q5XUX0 539 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-214ENST00000575431 TRIM52Q96A61 297 aa14.26□□□□□ -0.13
CCDC40-214ENST00000575431 ERVK-7P63135 1459 aa14.25□□□□□ -0.13
CCDC40-214ENST00000575431 NLRP1Q9C000 1473 aa14.25□□□□□ -0.13
CCDC40-214ENST00000575431 HRCP23327 699 aa14.25□□□□□ -0.13
CCDC40-214ENST00000575431 MYO3AQ8NEV4 1616 aa14.25□□□□□ -0.13
CCDC40-214ENST00000575431 TRIM26Q12899 539 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-214ENST00000575431 ZNF142P52746 1687 aaPredicted RBP14.23□□□□□ -0.13
CCDC40-214ENST00000575431 A2ML1A8K2U0 1454 aa14.22□□□□□ -0.13
CCDC40-214ENST00000575431 NOS1P29475 1434 aa14.22□□□□□ -0.13
CCDC40-214ENST00000575431 CEP170BQ9Y4F5 1589 aaPredicted RBP14.22□□□□□ -0.13
CCDC40-214ENST00000575431 CFAP65Q6ZU64 1925 aaKnown RBP14.21□□□□□ -0.13
CCDC40-214ENST00000575431 E9PCH4 1651 aa14.21□□□□□ -0.13
CCDC40-214ENST00000575431 SLC52A1Q9NWF4 448 aa14.21□□□□□ -0.13
CCDC40-214ENST00000575431 RAB3GAP2Q9H2M9 1393 aa14.21□□□□□ -0.14
CCDC40-214ENST00000575431 SLC4A1APQ9BWU0 796 aaKnown RBP14.2□□□□□ -0.14
CCDC40-214ENST00000575431 THEMISQ8N1K5 641 aaPredicted RBP14.19□□□□□ -0.14
CCDC40-214ENST00000575431 UGGT1Q9NYU2 1555 aa14.17□□□□□ -0.14
CCDC40-214ENST00000575431 KDM5AP29375 1690 aaKnown RBP14.17□□□□□ -0.14
CCDC40-214ENST00000575431 HSPA2P54652 639 aa14.17□□□□□ -0.14
CCDC40-214ENST00000575431 MPHOSPH9Q99550 1183 aa14.17□□□□□ -0.14
CCDC40-214ENST00000575431 PLA2R1Q13018 1463 aa14.17□□□□□ -0.14
CCDC40-214ENST00000575431 PKD2Q13563 968 aa14.16□□□□□ -0.14
CCDC40-214ENST00000575431 SYNMO15061 1565 aa14.16□□□□□ -0.14
CCDC40-214ENST00000575431 IDI1Q13907 227 aa14.15□□□□□ -0.14
CCDC40-214ENST00000575431 STAG3Q9UJ98 1225 aa14.15□□□□□ -0.14
CCDC40-214ENST00000575431 DMRT2Q9Y5R5 561 aa14.15□□□□□ -0.14
CCDC40-214ENST00000575431 SPHKAPQ2M3C7 1700 aa14.15□□□□□ -0.14
CCDC40-214ENST00000575431 PTPRTO14522 1441 aa14.15□□□□□ -0.14
CCDC40-214ENST00000575431 UBR1Q8IWV7 1749 aa14.13□□□□□ -0.15
CCDC40-214ENST00000575431 PIK3C2BO00750 1634 aa14.13□□□□□ -0.15
CCDC40-214ENST00000575431 TRPM2O94759 1503 aa14.12□□□□□ -0.15
CCDC40-214ENST00000575431 HDGFP51858 240 aaKnown RBP14.11□□□□□ -0.15
CCDC40-214ENST00000575431 ANKLE2Q86XL3 938 aa14.11□□□□□ -0.15
CCDC40-214ENST00000575431 ADGRB3O60242 1522 aa14.1□□□□□ -0.15
CCDC40-214ENST00000575431 STRCQ7RTU9 1775 aa14.09□□□□□ -0.15
CCDC40-214ENST00000575431 SLIT1O75093 1534 aa14.09□□□□□ -0.15
CCDC40-214ENST00000575431 TMEM131LA2VDJ0 1609 aa14.08□□□□□ -0.15
CCDC40-214ENST00000575431 EID1Q9Y6B2 187 aa14.08□□□□□ -0.16
CCDC40-214ENST00000575431 TMEM2Q9UHN6 1383 aa14.08□□□□□ -0.16
CCDC40-214ENST00000575431 ARHGAP23Q9P227 1491 aa14.07□□□□□ -0.16
CCDC40-214ENST00000575431 POLR1AO95602 1720 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-214ENST00000575431 CHGAP10645 457 aaKnown RBP14.06□□□□□ -0.16
CCDC40-214ENST00000575431 KIF1BO60333 1816 aa14.06□□□□□ -0.16
CCDC40-214ENST00000575431 CCDC144AA2RUR9 1427 aa14.06□□□□□ -0.16
CCDC40-214ENST00000575431 TXNDC2Q86VQ3 553 aa14.05□□□□□ -0.16
CCDC40-214ENST00000575431 NCKAP5LQ9HCH0 1330 aa14.05□□□□□ -0.16
CCDC40-214ENST00000575431 MED14O60244 1454 aa14.05□□□□□ -0.16
CCDC40-214ENST00000575431 CLTCL1P53675 1640 aa14.04□□□□□ -0.16
CCDC40-214ENST00000575431 FOXD1Q16676 465 aa14.04□□□□□ -0.16
CCDC40-214ENST00000575431 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.04□□□□□ -0.16
CCDC40-214ENST00000575431 SCAF11Q99590 1463 aaKnown RBP14.04□□□□□ -0.16
CCDC40-214ENST00000575431 MYO5BQ9ULV0 1848 aa14.02□□□□□ -0.16
CCDC40-214ENST00000575431 NPHP4O75161 1426 aaPredicted RBP14.02□□□□□ -0.16
CCDC40-214ENST00000575431 NEURL4Q96JN8 1562 aa14.01□□□□□ -0.17
CCDC40-214ENST00000575431 RIMS2Q9UQ26 1411 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms