RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 MROH1Q8NDA8 1641 aa25.62■■□□□ 1.69
NUP88-210ENST00000574867 SETD5Q9C0A6 1442 aa25.61■■□□□ 1.69
NUP88-210ENST00000574867 ADAMTSL3P82987 1691 aa25.6■■□□□ 1.69
NUP88-210ENST00000574867 FER1L4A9Z1Z3 1794 aa25.58■■□□□ 1.69
NUP88-210ENST00000574867 ZC3H13Q5T200 1668 aaKnown RBP25.58■■□□□ 1.68
NUP88-210ENST00000574867 GGT6Q6P531 493 aa25.57■■□□□ 1.68
NUP88-210ENST00000574867 PPP6R1Q9UPN7 881 aa25.57■■□□□ 1.68
NUP88-210ENST00000574867 MLECQ14165 292 aa25.57■■□□□ 1.68
NUP88-210ENST00000574867 KDM5DQ9BY66 1539 aa25.56■■□□□ 1.68
NUP88-210ENST00000574867 VWDEQ8N2E2 1590 aa25.54■■□□□ 1.68
NUP88-210ENST00000574867 MADDQ8WXG6 1647 aa25.54■■□□□ 1.68
NUP88-210ENST00000574867 KANK1Q14678 1352 aa25.54■■□□□ 1.68
NUP88-210ENST00000574867 ACIN1Q9UKV3 1341 aaKnown RBP25.54■■□□□ 1.68
NUP88-210ENST00000574867 CNTLNQ9NXG0 1405 aa25.53■■□□□ 1.68
NUP88-210ENST00000574867 RAB3GAP2Q9H2M9 1393 aa25.53■■□□□ 1.68
NUP88-210ENST00000574867 IQGAP3Q86VI3 1631 aa25.51■■□□□ 1.67
NUP88-210ENST00000574867 ABCC3O15438 1527 aa25.51■■□□□ 1.67
NUP88-210ENST00000574867 MROH2AA6NES4 1674 aa25.5■■□□□ 1.67
NUP88-210ENST00000574867 CLTCQ00610 1675 aaKnown RBP25.5■■□□□ 1.67
NUP88-210ENST00000574867 CEP152O94986 1710 aa25.5■■□□□ 1.67
NUP88-210ENST00000574867 ESF1Q9H501 851 aaKnown RBP25.49■■□□□ 1.67
NUP88-210ENST00000574867 RIMS1Q86UR5 1692 aaKnown RBP25.49■■□□□ 1.67
NUP88-210ENST00000574867 LMTK2Q8IWU2 1503 aa25.49■■□□□ 1.67
NUP88-210ENST00000574867 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.48■■□□□ 1.67
NUP88-210ENST00000574867 WASHC2CQ9Y4E1 1318 aa25.47■■□□□ 1.67
NUP88-210ENST00000574867 HRCP23327 699 aa25.47■■□□□ 1.67
NUP88-210ENST00000574867 NUP155O75694 1391 aa25.46■■□□□ 1.67
NUP88-210ENST00000574867 CAMSAP1Q5T5Y3 1602 aa25.46■■□□□ 1.67
NUP88-210ENST00000574867 PCGF6Q9BYE7 350 aa25.45■■□□□ 1.66
NUP88-210ENST00000574867 TET3O43151 1660 aa25.44■■□□□ 1.66
NUP88-210ENST00000574867 EFCAB6Q5THR3 1501 aa25.41■■□□□ 1.66
NUP88-210ENST00000574867 TRIM52Q96A61 297 aa25.41■■□□□ 1.66
NUP88-210ENST00000574867 KDM4FA0A1W2PPD8 638 aa25.4■■□□□ 1.66
NUP88-210ENST00000574867 C3P01024 1663 aa25.39■■□□□ 1.65
NUP88-210ENST00000574867 PZPP20742 1482 aa25.38■■□□□ 1.65
NUP88-210ENST00000574867 PTPRMP28827 1452 aa25.38■■□□□ 1.65
NUP88-210ENST00000574867 ARHGAP31Q2M1Z3 1444 aa25.38■■□□□ 1.65
NUP88-210ENST00000574867 ZMYM3Q14202 1370 aa25.37■■□□□ 1.65
NUP88-210ENST00000574867 RPRD2Q5VT52 1461 aaKnown RBP25.35■■□□□ 1.65
NUP88-210ENST00000574867 E9PCH4 1651 aa25.33■■□□□ 1.65
NUP88-210ENST00000574867 NPATQ14207 1427 aa25.32■■□□□ 1.64
NUP88-210ENST00000574867 SLC4A1APQ9BWU0 796 aaKnown RBP25.3■■□□□ 1.64
NUP88-210ENST00000574867 PREX1Q8TCU6 1659 aa25.29■■□□□ 1.64
NUP88-210ENST00000574867 SPATA31D1Q6ZQQ2 1576 aa25.27■■□□□ 1.64
NUP88-210ENST00000574867 MPHOSPH9Q99550 1183 aa25.27■■□□□ 1.64
NUP88-210ENST00000574867 ERVK-7P63135 1459 aa25.26■■□□□ 1.63
NUP88-210ENST00000574867 CEBPAP49715 358 aaPredicted RBP25.24■■□□□ 1.63
NUP88-210ENST00000574867 PKD2Q13563 968 aa25.23■■□□□ 1.63
NUP88-210ENST00000574867 SPHKAPQ2M3C7 1700 aa25.22■■□□□ 1.63
NUP88-210ENST00000574867 NOS1P29475 1434 aa25.22■■□□□ 1.63
NUP88-210ENST00000574867 CFAP65Q6ZU64 1925 aaKnown RBP25.21■■□□□ 1.63
NUP88-210ENST00000574867 PLPPR3Q6T4P5 718 aa25.2■■□□□ 1.62
NUP88-210ENST00000574867 FBXO31Q5XUX0 539 aaPredicted RBP25.19■■□□□ 1.62
NUP88-210ENST00000574867 SYNMO15061 1565 aa25.18■■□□□ 1.62
NUP88-210ENST00000574867 TNRQ92752 1358 aa25.18■■□□□ 1.62
NUP88-210ENST00000574867 PTPRTO14522 1441 aa25.18■■□□□ 1.62
NUP88-210ENST00000574867 SETD1BQ9UPS6 1966 aaKnown RBP25.17■■□□□ 1.62
NUP88-210ENST00000574867 TRPM2O94759 1503 aa25.17■■□□□ 1.62
NUP88-210ENST00000574867 MYO3AQ8NEV4 1616 aa25.17■■□□□ 1.62
NUP88-210ENST00000574867 NLRP1Q9C000 1473 aa25.14■■□□□ 1.61
NUP88-210ENST00000574867 DHX57Q6P158 1386 aaKnown RBP25.14■■□□□ 1.61
NUP88-210ENST00000574867 PIK3C2BO00750 1634 aa25.13■■□□□ 1.61
NUP88-210ENST00000574867 ZNF142P52746 1687 aaPredicted RBP25.12■■□□□ 1.61
NUP88-210ENST00000574867 PLA2R1Q13018 1463 aa25.11■■□□□ 1.61
NUP88-210ENST00000574867 FOXD1Q16676 465 aa25.11■■□□□ 1.61
NUP88-210ENST00000574867 UHRF1BP1Q6BDS2 1440 aa25.1■■□□□ 1.61
NUP88-210ENST00000574867 SLC52A1Q9NWF4 448 aa25.09■■□□□ 1.61
NUP88-210ENST00000574867 CEP170BQ9Y4F5 1589 aaPredicted RBP25.08■■□□□ 1.61
NUP88-210ENST00000574867 CLTCL1P53675 1640 aa25.07■■□□□ 1.6
NUP88-210ENST00000574867 UGGT1Q9NYU2 1555 aa25.07■■□□□ 1.6
NUP88-210ENST00000574867 A2ML1A8K2U0 1454 aa25.06■■□□□ 1.6
NUP88-210ENST00000574867 KDM5AP29375 1690 aaKnown RBP25.06■■□□□ 1.6
NUP88-210ENST00000574867 ANKRD30BQ9BXX2 1392 aa25.06■■□□□ 1.6
NUP88-210ENST00000574867 CCDC144AA2RUR9 1427 aa25.05■■□□□ 1.6
NUP88-210ENST00000574867 ADGRB3O60242 1522 aa25.03■■□□□ 1.6
NUP88-210ENST00000574867 UBR1Q8IWV7 1749 aa25.02■■□□□ 1.6
NUP88-210ENST00000574867 KIF1BO60333 1816 aa25.01■■□□□ 1.59
NUP88-210ENST00000574867 IDI1Q13907 227 aa25.01■■□□□ 1.59
NUP88-210ENST00000574867 AEBP2Q6ZN18 517 aaPredicted RBP25■■□□□ 1.59
NUP88-210ENST00000574867 LMTK3Q96Q04 1460 aa25■■□□□ 1.59
NUP88-210ENST00000574867 TMEM131LA2VDJ0 1609 aa24.99■■□□□ 1.59
NUP88-210ENST00000574867 NEURL4Q96JN8 1562 aa24.96■■□□□ 1.59
NUP88-210ENST00000574867 MYO5BQ9ULV0 1848 aa24.94■■□□□ 1.58
NUP88-210ENST00000574867 STAG3Q9UJ98 1225 aa24.94■■□□□ 1.58
NUP88-210ENST00000574867 CLSPNQ9HAW4 1339 aa24.93■■□□□ 1.58
NUP88-210ENST00000574867 THEMISQ8N1K5 641 aaPredicted RBP24.91■■□□□ 1.58
NUP88-210ENST00000574867 SPATA31E1Q6ZUB1 1445 aa24.89■■□□□ 1.58
NUP88-210ENST00000574867 CHGAP10645 457 aaKnown RBP24.89■■□□□ 1.58
NUP88-210ENST00000574867 CCER1Q8TC90 406 aaPredicted RBP24.89■■□□□ 1.57
NUP88-210ENST00000574867 SLIT1O75093 1534 aa24.88■■□□□ 1.57
NUP88-210ENST00000574867 ARHGAP23Q9P227 1491 aa24.87■■□□□ 1.57
NUP88-210ENST00000574867 TMEM2Q9UHN6 1383 aa24.86■■□□□ 1.57
NUP88-210ENST00000574867 ZFYVE9O95405 1425 aa24.82■■□□□ 1.56
NUP88-210ENST00000574867 POLR1AO95602 1720 aaPredicted RBP24.82■■□□□ 1.56
NUP88-210ENST00000574867 NEXMIFQ5QGS0 1516 aa24.82■■□□□ 1.56
NUP88-210ENST00000574867 ZNF326Q5BKZ1 582 aaKnown RBP24.81■■□□□ 1.56
NUP88-210ENST00000574867 RIMS2Q9UQ26 1411 aa24.81■■□□□ 1.56
NUP88-210ENST00000574867 IFT172Q9UG01 1749 aa24.81■■□□□ 1.56
NUP88-210ENST00000574867 HSPA2P54652 639 aa24.81■■□□□ 1.56
NUP88-210ENST00000574867 SIN3AQ96ST3 1273 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms