RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 NCOA1Q15788 1441 aa15.78■□□□□ 0.12
CDH3-210ENST00000569117 ANKRD30AQ9BXX3 1397 aa15.78■□□□□ 0.12
CDH3-210ENST00000569117 TSPY4P0CV99 314 aa15.78■□□□□ 0.12
CDH3-210ENST00000569117 TSPY10P0CW01 314 aa15.78■□□□□ 0.12
CDH3-210ENST00000569117 ITGAEP38570 1179 aa15.78■□□□□ 0.12
CDH3-210ENST00000569117 REREQ9P2R6 1566 aa15.78■□□□□ 0.12
CDH3-210ENST00000569117 DUOX2Q9NRD8 1548 aa15.76■□□□□ 0.11
CDH3-210ENST00000569117 YEATS2Q9ULM3 1422 aa15.76■□□□□ 0.11
CDH3-210ENST00000569117 EIF2AK4Q9P2K8 1649 aaKnown RBP15.76■□□□□ 0.11
CDH3-210ENST00000569117 NAIPQ13075 1403 aa15.75■□□□□ 0.11
CDH3-210ENST00000569117 KIF15Q9NS87 1388 aa15.75■□□□□ 0.11
CDH3-210ENST00000569117 BCORL1Q5H9F3 1711 aa15.74■□□□□ 0.11
CDH3-210ENST00000569117 CHIC2Q9UKJ5 165 aa15.73■□□□□ 0.11
CDH3-210ENST00000569117 ERBINQ96RT1 1412 aa15.73■□□□□ 0.11
CDH3-210ENST00000569117 A2MP01023 1474 aa15.71■□□□□ 0.11
CDH3-210ENST00000569117 PCGF6Q9BYE7 350 aa15.7■□□□□ 0.1
CDH3-210ENST00000569117 ATF5Q9Y2D1 282 aaPredicted RBP15.7■□□□□ 0.1
CDH3-210ENST00000569117 SIGLEC1Q9BZZ2 1709 aa15.7■□□□□ 0.1
CDH3-210ENST00000569117 ANKRD50Q9ULJ7 1429 aa15.69■□□□□ 0.1
CDH3-210ENST00000569117 DEPDC5O75140 1603 aa15.69■□□□□ 0.1
CDH3-210ENST00000569117 RNF17Q9BXT8 1623 aaKnown RBP15.69■□□□□ 0.1
CDH3-210ENST00000569117 ATP10AO60312 1499 aa15.69■□□□□ 0.1
CDH3-210ENST00000569117 UNC13BO14795 1591 aa15.68■□□□□ 0.1
CDH3-210ENST00000569117 RRP7BPQ9NSQ0 103 aa15.68■□□□□ 0.1
CDH3-210ENST00000569117 AGLP35573 1532 aa15.68■□□□□ 0.1
CDH3-210ENST00000569117 SETD5Q9C0A6 1442 aa15.68■□□□□ 0.1
CDH3-210ENST00000569117 DHX29Q7Z478 1369 aaKnown RBP15.67■□□□□ 0.1
CDH3-210ENST00000569117 MYT1LQ9UL68 1186 aa15.67■□□□□ 0.1
CDH3-210ENST00000569117 MROH1Q8NDA8 1641 aa15.65■□□□□ 0.1
CDH3-210ENST00000569117 PRDM15P57071 1507 aaPredicted RBP15.65■□□□□ 0.1
CDH3-210ENST00000569117 RAB3GAP2Q9H2M9 1393 aa15.64■□□□□ 0.09
CDH3-210ENST00000569117 KDM5DQ9BY66 1539 aa15.63■□□□□ 0.09
CDH3-210ENST00000569117 IQGAP3Q86VI3 1631 aa15.61■□□□□ 0.09
CDH3-210ENST00000569117 ZC3H13Q5T200 1668 aaKnown RBP15.6■□□□□ 0.09
CDH3-210ENST00000569117 FAM135AQ9P2D6 1515 aa15.6■□□□□ 0.09
CDH3-210ENST00000569117 VWDEQ8N2E2 1590 aa15.6■□□□□ 0.09
CDH3-210ENST00000569117 ACIN1Q9UKV3 1341 aaKnown RBP15.58■□□□□ 0.08
CDH3-210ENST00000569117 HRCP23327 699 aa15.57■□□□□ 0.08
CDH3-210ENST00000569117 CEP152O94986 1710 aa15.56■□□□□ 0.08
CDH3-210ENST00000569117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.55■□□□□ 0.08
CDH3-210ENST00000569117 TET3O43151 1660 aa15.54■□□□□ 0.08
CDH3-210ENST00000569117 LMTK2Q8IWU2 1503 aa15.54■□□□□ 0.08
CDH3-210ENST00000569117 KIF3BO15066 747 aa15.54■□□□□ 0.08
CDH3-210ENST00000569117 PZPP20742 1482 aa15.53■□□□□ 0.08
CDH3-210ENST00000569117 SAMD1Q6SPF0 538 aaPredicted RBP15.53■□□□□ 0.08
CDH3-210ENST00000569117 ABCC3O15438 1527 aa15.53■□□□□ 0.08
CDH3-210ENST00000569117 FER1L4A9Z1Z3 1794 aa15.52■□□□□ 0.08
CDH3-210ENST00000569117 CAMSAP1Q5T5Y3 1602 aa15.52■□□□□ 0.08
CDH3-210ENST00000569117 MROH2AA6NES4 1674 aa15.51■□□□□ 0.07
CDH3-210ENST00000569117 EFCAB6Q5THR3 1501 aa15.51■□□□□ 0.07
CDH3-210ENST00000569117 CLTCQ00610 1675 aaKnown RBP15.51■□□□□ 0.07
CDH3-210ENST00000569117 KANK1Q14678 1352 aa15.5■□□□□ 0.07
CDH3-210ENST00000569117 DCAF8L1A6NGE4 600 aa15.5■□□□□ 0.07
CDH3-210ENST00000569117 NUP155O75694 1391 aa15.49■□□□□ 0.07
CDH3-210ENST00000569117 ADAMTSL3P82987 1691 aa15.49■□□□□ 0.07
CDH3-210ENST00000569117 E9PCH4 1651 aa15.48■□□□□ 0.07
CDH3-210ENST00000569117 MADDQ8WXG6 1647 aa15.47■□□□□ 0.07
CDH3-210ENST00000569117 ARID4BQ4LE39 1312 aaPredicted RBP15.46■□□□□ 0.07
CDH3-210ENST00000569117 GGT6Q6P531 493 aa15.46■□□□□ 0.07
CDH3-210ENST00000569117 DHX57Q6P158 1386 aaKnown RBP15.46■□□□□ 0.07
CDH3-210ENST00000569117 CNTLNQ9NXG0 1405 aa15.45■□□□□ 0.06
CDH3-210ENST00000569117 TRIM52Q96A61 297 aa15.45■□□□□ 0.06
CDH3-210ENST00000569117 RPRD2Q5VT52 1461 aaKnown RBP15.45■□□□□ 0.06
CDH3-210ENST00000569117 RIMS1Q86UR5 1692 aaKnown RBP15.44■□□□□ 0.06
CDH3-210ENST00000569117 ARHGAP31Q2M1Z3 1444 aa15.43■□□□□ 0.06
CDH3-210ENST00000569117 SPHKAPQ2M3C7 1700 aa15.43■□□□□ 0.06
CDH3-210ENST00000569117 WASHC2CQ9Y4E1 1318 aa15.42■□□□□ 0.06
CDH3-210ENST00000569117 C3P01024 1663 aa15.41■□□□□ 0.06
CDH3-210ENST00000569117 PREX1Q8TCU6 1659 aa15.41■□□□□ 0.06
CDH3-210ENST00000569117 MLECQ14165 292 aa15.41■□□□□ 0.06
CDH3-210ENST00000569117 MPHOSPH9Q99550 1183 aa15.41■□□□□ 0.06
CDH3-210ENST00000569117 NPATQ14207 1427 aa15.41■□□□□ 0.06
CDH3-210ENST00000569117 U3KPZ7 1027 aaPredicted RBP15.4■□□□□ 0.06
CDH3-210ENST00000569117 TRPM2O94759 1503 aa15.38■□□□□ 0.05
CDH3-210ENST00000569117 SPATA31D1Q6ZQQ2 1576 aa15.37■□□□□ 0.05
CDH3-210ENST00000569117 ERVK-7P63135 1459 aa15.36■□□□□ 0.05
CDH3-210ENST00000569117 PKD2Q13563 968 aa15.36■□□□□ 0.05
CDH3-210ENST00000569117 SYNMO15061 1565 aa15.36■□□□□ 0.05
CDH3-210ENST00000569117 PTPRTO14522 1441 aa15.35■□□□□ 0.05
CDH3-210ENST00000569117 ESF1Q9H501 851 aaKnown RBP15.35■□□□□ 0.05
CDH3-210ENST00000569117 PIK3C2BO00750 1634 aa15.35■□□□□ 0.05
CDH3-210ENST00000569117 NOS1P29475 1434 aa15.34■□□□□ 0.05
CDH3-210ENST00000569117 ZMYM3Q14202 1370 aa15.34■□□□□ 0.05
CDH3-210ENST00000569117 PLA2R1Q13018 1463 aa15.33■□□□□ 0.05
CDH3-210ENST00000569117 CFAP65Q6ZU64 1925 aaKnown RBP15.33■□□□□ 0.05
CDH3-210ENST00000569117 CLTCL1P53675 1640 aa15.33■□□□□ 0.04
CDH3-210ENST00000569117 CLSPNQ9HAW4 1339 aa15.33■□□□□ 0.04
CDH3-210ENST00000569117 ANKRD30BQ9BXX2 1392 aa15.33■□□□□ 0.04
CDH3-210ENST00000569117 FBXO3Q9UK99 471 aa15.32■□□□□ 0.04
CDH3-210ENST00000569117 PTPRMP28827 1452 aa15.32■□□□□ 0.04
CDH3-210ENST00000569117 ZNF219Q9P2Y4 722 aaPredicted RBP15.3■□□□□ 0.04
CDH3-210ENST00000569117 MYO3AQ8NEV4 1616 aa15.29■□□□□ 0.04
CDH3-210ENST00000569117 UGGT1Q9NYU2 1555 aa15.29■□□□□ 0.04
CDH3-210ENST00000569117 CCER1Q8TC90 406 aaPredicted RBP15.29■□□□□ 0.04
CDH3-210ENST00000569117 NEURL4Q96JN8 1562 aa15.28■□□□□ 0.04
CDH3-210ENST00000569117 CCDC144AA2RUR9 1427 aa15.28■□□□□ 0.04
CDH3-210ENST00000569117 KIF1BO60333 1816 aa15.28■□□□□ 0.04
CDH3-210ENST00000569117 KDM5AP29375 1690 aaKnown RBP15.28■□□□□ 0.04
CDH3-210ENST00000569117 ZNF142P52746 1687 aaPredicted RBP15.27■□□□□ 0.03
CDH3-210ENST00000569117 ADGRB3O60242 1522 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms