RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.94■□□□□ 0.78
CLK3-224ENST00000568605 KIF15Q9NS87 1388 aa19.94■□□□□ 0.78
CLK3-224ENST00000568605 PPARGC1BQ86YN6 1023 aaKnown RBP19.93■□□□□ 0.78
CLK3-224ENST00000568605 RRBP1Q9P2E9 1410 aaKnown RBP19.91■□□□□ 0.78
CLK3-224ENST00000568605 PRDM15P57071 1507 aaPredicted RBP19.91■□□□□ 0.78
CLK3-224ENST00000568605 MROH1Q8NDA8 1641 aa19.91■□□□□ 0.78
CLK3-224ENST00000568605 CAMSAP1Q5T5Y3 1602 aa19.9■□□□□ 0.78
CLK3-224ENST00000568605 PPP6R1Q9UPN7 881 aa19.89■□□□□ 0.77
CLK3-224ENST00000568605 KIF3BO15066 747 aa19.88■□□□□ 0.77
CLK3-224ENST00000568605 GCC2Q8IWJ2 1684 aa19.87■□□□□ 0.77
CLK3-224ENST00000568605 NCOA1Q15788 1441 aa19.87■□□□□ 0.77
CLK3-224ENST00000568605 GGT6Q6P531 493 aa19.87■□□□□ 0.77
CLK3-224ENST00000568605 ZNF142P52746 1687 aaPredicted RBP19.86■□□□□ 0.77
CLK3-224ENST00000568605 MYO3AQ8NEV4 1616 aa19.86■□□□□ 0.77
CLK3-224ENST00000568605 PLPPR3Q6T4P5 718 aa19.84■□□□□ 0.77
CLK3-224ENST00000568605 ABCC3O15438 1527 aa19.84■□□□□ 0.77
CLK3-224ENST00000568605 CFAP65Q6ZU64 1925 aaKnown RBP19.84■□□□□ 0.77
CLK3-224ENST00000568605 CHIC2Q9UKJ5 165 aa19.83■□□□□ 0.77
CLK3-224ENST00000568605 LMTK3Q96Q04 1460 aa19.83■□□□□ 0.76
CLK3-224ENST00000568605 NPATQ14207 1427 aa19.83■□□□□ 0.76
CLK3-224ENST00000568605 UNC13BO14795 1591 aa19.83■□□□□ 0.76
CLK3-224ENST00000568605 ROCK1Q13464 1354 aa19.83■□□□□ 0.76
CLK3-224ENST00000568605 RRP7BPQ9NSQ0 103 aa19.82■□□□□ 0.76
CLK3-224ENST00000568605 UHRF1BP1Q6BDS2 1440 aa19.8■□□□□ 0.76
CLK3-224ENST00000568605 ZMYM3Q14202 1370 aa19.8■□□□□ 0.76
CLK3-224ENST00000568605 PZPP20742 1482 aa19.79■□□□□ 0.76
CLK3-224ENST00000568605 ANKRD50Q9ULJ7 1429 aa19.79■□□□□ 0.76
CLK3-224ENST00000568605 PTPRKQ15262 1439 aa19.78■□□□□ 0.76
CLK3-224ENST00000568605 KANK1Q14678 1352 aa19.78■□□□□ 0.76
CLK3-224ENST00000568605 WASHC2CQ9Y4E1 1318 aa19.77■□□□□ 0.76
CLK3-224ENST00000568605 VWDEQ8N2E2 1590 aa19.77■□□□□ 0.76
CLK3-224ENST00000568605 TET3O43151 1660 aa19.76■□□□□ 0.75
CLK3-224ENST00000568605 CEBPAP49715 358 aaPredicted RBP19.76■□□□□ 0.75
CLK3-224ENST00000568605 CEP170BQ9Y4F5 1589 aaPredicted RBP19.75■□□□□ 0.75
CLK3-224ENST00000568605 ITGAEP38570 1179 aa19.75■□□□□ 0.75
CLK3-224ENST00000568605 IQGAP3Q86VI3 1631 aa19.74■□□□□ 0.75
CLK3-224ENST00000568605 LMTK2Q8IWU2 1503 aa19.74■□□□□ 0.75
CLK3-224ENST00000568605 EFCAB6Q5THR3 1501 aa19.73■□□□□ 0.75
CLK3-224ENST00000568605 SPATA31D1Q6ZQQ2 1576 aa19.73■□□□□ 0.75
CLK3-224ENST00000568605 POLR1AO95602 1720 aaPredicted RBP19.71■□□□□ 0.75
CLK3-224ENST00000568605 ARHGAP31Q2M1Z3 1444 aa19.68■□□□□ 0.74
CLK3-224ENST00000568605 ERVK-7P63135 1459 aa19.67■□□□□ 0.74
CLK3-224ENST00000568605 STRCQ7RTU9 1775 aa19.67■□□□□ 0.74
CLK3-224ENST00000568605 E9PCH4 1651 aa19.66■□□□□ 0.74
CLK3-224ENST00000568605 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.66■□□□□ 0.743e-9■■■■■ 27.4
CLK3-224ENST00000568605 TNRQ92752 1358 aa19.66■□□□□ 0.74
CLK3-224ENST00000568605 NLRP1Q9C000 1473 aa19.66■□□□□ 0.74
CLK3-224ENST00000568605 KDM5AP29375 1690 aaKnown RBP19.65■□□□□ 0.74
CLK3-224ENST00000568605 A2ML1A8K2U0 1454 aa19.65■□□□□ 0.74
CLK3-224ENST00000568605 HFM1A2PYH4 1435 aa19.64■□□□□ 0.73
CLK3-224ENST00000568605 RPRD2Q5VT52 1461 aaKnown RBP19.64■□□□□ 0.73
CLK3-224ENST00000568605 UBR1Q8IWV7 1749 aa19.64■□□□□ 0.73
CLK3-224ENST00000568605 NAIPQ13075 1403 aa19.62■□□□□ 0.73
CLK3-224ENST00000568605 SPHKAPQ2M3C7 1700 aa19.62■□□□□ 0.73
CLK3-224ENST00000568605 PIK3C2BO00750 1634 aa19.6■□□□□ 0.73
CLK3-224ENST00000568605 UGGT1Q9NYU2 1555 aa19.6■□□□□ 0.73
CLK3-224ENST00000568605 PLA2R1Q13018 1463 aa19.6■□□□□ 0.73
CLK3-224ENST00000568605 HSPA2P54652 639 aa19.59■□□□□ 0.73
CLK3-224ENST00000568605 SYNMO15061 1565 aa19.58■□□□□ 0.73
CLK3-224ENST00000568605 MYO5BQ9ULV0 1848 aa19.58■□□□□ 0.72
CLK3-224ENST00000568605 FBXO31Q5XUX0 539 aaPredicted RBP19.56■□□□□ 0.72
CLK3-224ENST00000568605 NUP155O75694 1391 aa19.55■□□□□ 0.72
CLK3-224ENST00000568605 ADGRB3O60242 1522 aa19.52■□□□□ 0.72
CLK3-224ENST00000568605 NOS1P29475 1434 aa19.51■□□□□ 0.71
CLK3-224ENST00000568605 KIF1BO60333 1816 aa19.51■□□□□ 0.71
CLK3-224ENST00000568605 IQGAP1P46940 1657 aa19.49■□□□□ 0.71
CLK3-224ENST00000568605 DMRT2Q9Y5R5 561 aa19.48■□□□□ 0.71
CLK3-224ENST00000568605 NEURL4Q96JN8 1562 aa19.48■□□□□ 0.71
CLK3-224ENST00000568605 PTPRTO14522 1441 aa19.47■□□□□ 0.71
CLK3-224ENST00000568605 ACIN1Q9UKV3 1341 aaKnown RBP19.47■□□□□ 0.71
CLK3-224ENST00000568605 THEMISQ8N1K5 641 aaPredicted RBP19.46■□□□□ 0.71
CLK3-224ENST00000568605 TMEM131LA2VDJ0 1609 aa19.45■□□□□ 0.7
CLK3-224ENST00000568605 SLIT1O75093 1534 aa19.45■□□□□ 0.7
CLK3-224ENST00000568605 PKD2Q13563 968 aa19.44■□□□□ 0.7
CLK3-224ENST00000568605 TRPM2O94759 1503 aa19.44■□□□□ 0.7
CLK3-224ENST00000568605 SETD5Q9C0A6 1442 aa19.42■□□□□ 0.7
CLK3-224ENST00000568605 TRIM52Q96A61 297 aa19.41■□□□□ 0.7
CLK3-224ENST00000568605 SLC52A1Q9NWF4 448 aa19.41■□□□□ 0.7
CLK3-224ENST00000568605 ARHGAP23Q9P227 1491 aa19.41■□□□□ 0.7
CLK3-224ENST00000568605 CLTCL1P53675 1640 aa19.4■□□□□ 0.7
CLK3-224ENST00000568605 STAG3Q9UJ98 1225 aa19.4■□□□□ 0.7
CLK3-224ENST00000568605 MED14O60244 1454 aa19.39■□□□□ 0.69
CLK3-224ENST00000568605 SCAF11Q99590 1463 aaKnown RBP19.39■□□□□ 0.69
CLK3-224ENST00000568605 ANKLE2Q86XL3 938 aa19.37■□□□□ 0.69
CLK3-224ENST00000568605 RAB3GAP2Q9H2M9 1393 aa19.35■□□□□ 0.69
CLK3-224ENST00000568605 NCKAP5LQ9HCH0 1330 aa19.35■□□□□ 0.69
CLK3-224ENST00000568605 NPHP4O75161 1426 aaPredicted RBP19.34■□□□□ 0.69
CLK3-224ENST00000568605 TMEM2Q9UHN6 1383 aa19.34■□□□□ 0.69
CLK3-224ENST00000568605 IDI1Q13907 227 aa19.34■□□□□ 0.69
CLK3-224ENST00000568605 SLC4A1APQ9BWU0 796 aaKnown RBP19.34■□□□□ 0.69
CLK3-224ENST00000568605 EID1Q9Y6B2 187 aa19.32■□□□□ 0.68
CLK3-224ENST00000568605 PPLO60437 1756 aa19.29■□□□□ 0.68
CLK3-224ENST00000568605 LTBP4Q8N2S1 1624 aa19.29■□□□□ 0.68
CLK3-224ENST00000568605 ZFYVE9O95405 1425 aa19.27■□□□□ 0.68
CLK3-224ENST00000568605 IFT172Q9UG01 1749 aa19.27■□□□□ 0.68
CLK3-224ENST00000568605 DIP2AQ14689 1571 aa19.27■□□□□ 0.67
CLK3-224ENST00000568605 RIMS2Q9UQ26 1411 aa19.26■□□□□ 0.67
CLK3-224ENST00000568605 CPS1P31327 1500 aa19.26■□□□□ 0.67
CLK3-224ENST00000568605 CHGAP10645 457 aaKnown RBP19.26■□□□□ 0.67
CLK3-224ENST00000568605 TXNDC2Q86VQ3 553 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms