RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 ANKRD50Q9ULJ7 1429 aa33.2■■■□□ 2.91
CLN3-234ENST00000568472 FAM135AQ9P2D6 1515 aa33.18■■■□□ 2.9
CLN3-234ENST00000568472 FER1L4A9Z1Z3 1794 aa33.18■■■□□ 2.9
CLN3-234ENST00000568472 WASHC2CQ9Y4E1 1318 aa33.15■■■□□ 2.9
CLN3-234ENST00000568472 RIMS1Q86UR5 1692 aaKnown RBP33.14■■■□□ 2.9
CLN3-234ENST00000568472 RNF17Q9BXT8 1623 aaKnown RBP33.14■■■□□ 2.9
CLN3-234ENST00000568472 ZMYM3Q14202 1370 aa33.09■■■□□ 2.89
CLN3-234ENST00000568472 KANK1Q14678 1352 aa33.09■■■□□ 2.89
CLN3-234ENST00000568472 KDM5DQ9BY66 1539 aa33.07■■■□□ 2.89
CLN3-234ENST00000568472 HFM1A2PYH4 1435 aa33.05■■■□□ 2.88
CLN3-234ENST00000568472 MROH2AA6NES4 1674 aa33.04■■■□□ 2.88
CLN3-234ENST00000568472 NAIPQ13075 1403 aa33.04■■■□□ 2.88
CLN3-234ENST00000568472 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.04■■■□□ 2.88
CLN3-234ENST00000568472 PRDM15P57071 1507 aaPredicted RBP33.03■■■□□ 2.88
CLN3-234ENST00000568472 DEPDC5O75140 1603 aa33.02■■■□□ 2.88
CLN3-234ENST00000568472 CEBPAP49715 358 aaPredicted RBP33.02■■■□□ 2.88
CLN3-234ENST00000568472 MROH1Q8NDA8 1641 aa33.02■■■□□ 2.88
CLN3-234ENST00000568472 CLTCQ00610 1675 aaKnown RBP33.01■■■□□ 2.87
CLN3-234ENST00000568472 PLPPR3Q6T4P5 718 aa32.99■■■□□ 2.87
CLN3-234ENST00000568472 ABCC3O15438 1527 aa32.98■■■□□ 2.87
CLN3-234ENST00000568472 ZC3H13Q5T200 1668 aaKnown RBP32.98■■■□□ 2.87
CLN3-234ENST00000568472 NPATQ14207 1427 aa32.95■■■□□ 2.87
CLN3-234ENST00000568472 ACIN1Q9UKV3 1341 aaKnown RBP32.94■■■□□ 2.86
CLN3-234ENST00000568472 C3P01024 1663 aa32.94■■■□□ 2.86
CLN3-234ENST00000568472 VWDEQ8N2E2 1590 aa32.92■■■□□ 2.86
CLN3-234ENST00000568472 LMTK2Q8IWU2 1503 aa32.92■■■□□ 2.86
CLN3-234ENST00000568472 GCC2Q8IWJ2 1684 aa32.91■■■□□ 2.86
CLN3-234ENST00000568472 PZPP20742 1482 aa32.91■■■□□ 2.86
CLN3-234ENST00000568472 ARHGAP31Q2M1Z3 1444 aa32.9■■■□□ 2.86
CLN3-234ENST00000568472 UNC13BO14795 1591 aa32.9■■■□□ 2.86
CLN3-234ENST00000568472 NUP155O75694 1391 aa32.88■■■□□ 2.85
CLN3-234ENST00000568472 SETD5Q9C0A6 1442 aa32.83■■■□□ 2.85
CLN3-234ENST00000568472 SETD1BQ9UPS6 1966 aaKnown RBP32.82■■■□□ 2.84
CLN3-234ENST00000568472 FBXO31Q5XUX0 539 aaPredicted RBP32.82■■■□□ 2.84
CLN3-234ENST00000568472 CAMSAP1Q5T5Y3 1602 aa32.81■■■□□ 2.84
CLN3-234ENST00000568472 CEP152O94986 1710 aa32.81■■■□□ 2.84
CLN3-234ENST00000568472 UHRF1BP1Q6BDS2 1440 aa32.79■■■□□ 2.84
CLN3-234ENST00000568472 TRIM52Q96A61 297 aa32.78■■■□□ 2.84
CLN3-234ENST00000568472 TNRQ92752 1358 aa32.78■■■□□ 2.84
CLN3-234ENST00000568472 IQGAP3Q86VI3 1631 aa32.77■■■□□ 2.84
CLN3-234ENST00000568472 RPRD2Q5VT52 1461 aaKnown RBP32.77■■■□□ 2.84
CLN3-234ENST00000568472 EFCAB6Q5THR3 1501 aa32.76■■■□□ 2.83
CLN3-234ENST00000568472 TRIM26Q12899 539 aaPredicted RBP32.75■■■□□ 2.83
CLN3-234ENST00000568472 HRCP23327 699 aa32.74■■■□□ 2.83
CLN3-234ENST00000568472 TET3O43151 1660 aa32.73■■■□□ 2.83
CLN3-234ENST00000568472 ERVK-7P63135 1459 aa32.73■■■□□ 2.83
CLN3-234ENST00000568472 PREX1Q8TCU6 1659 aa32.72■■■□□ 2.83
CLN3-234ENST00000568472 SPATA31D1Q6ZQQ2 1576 aa32.72■■■□□ 2.83
CLN3-234ENST00000568472 LMTK3Q96Q04 1460 aa32.72■■■□□ 2.83
CLN3-234ENST00000568472 RAB3GAP2Q9H2M9 1393 aa32.68■■■□□ 2.82
CLN3-234ENST00000568472 NLRP1Q9C000 1473 aa32.67■■■□□ 2.82
CLN3-234ENST00000568472 SLC4A1APQ9BWU0 796 aaKnown RBP32.65■■■□□ 2.82
CLN3-234ENST00000568472 NOS1P29475 1434 aa32.64■■■□□ 2.82
CLN3-234ENST00000568472 A2ML1A8K2U0 1454 aa32.62■■■□□ 2.81
CLN3-234ENST00000568472 SLC52A1Q9NWF4 448 aa32.62■■■□□ 2.81
CLN3-234ENST00000568472 MYO3AQ8NEV4 1616 aa32.61■■■□□ 2.81
CLN3-234ENST00000568472 CEP170BQ9Y4F5 1589 aaPredicted RBP32.58■■■□□ 2.81
CLN3-234ENST00000568472 HSPA2P54652 639 aa32.57■■■□□ 2.8
CLN3-234ENST00000568472 PKD2Q13563 968 aa32.57■■■□□ 2.8
CLN3-234ENST00000568472 MPHOSPH9Q99550 1183 aa32.57■■■□□ 2.8
CLN3-234ENST00000568472 THEMISQ8N1K5 641 aaPredicted RBP32.56■■■□□ 2.8
CLN3-234ENST00000568472 E9PCH4 1651 aa32.56■■■□□ 2.8
CLN3-234ENST00000568472 ZNF142P52746 1687 aaPredicted RBP32.54■■■□□ 2.8
CLN3-234ENST00000568472 IDI1Q13907 227 aa32.53■■■□□ 2.8
CLN3-234ENST00000568472 PTPRTO14522 1441 aa32.51■■■□□ 2.8
CLN3-234ENST00000568472 CFAP65Q6ZU64 1925 aaKnown RBP32.51■■■□□ 2.8
CLN3-234ENST00000568472 SYNMO15061 1565 aa32.49■■■□□ 2.79
CLN3-234ENST00000568472 UGGT1Q9NYU2 1555 aa32.49■■■□□ 2.79
CLN3-234ENST00000568472 STAG3Q9UJ98 1225 aa32.47■■■□□ 2.79
CLN3-234ENST00000568472 PLA2R1Q13018 1463 aa32.45■■■□□ 2.79
CLN3-234ENST00000568472 DMRT2Q9Y5R5 561 aa32.42■■■□□ 2.78
CLN3-234ENST00000568472 KDM5AP29375 1690 aaKnown RBP32.39■■■□□ 2.78
CLN3-234ENST00000568472 TRPM2O94759 1503 aa32.38■■■□□ 2.77
CLN3-234ENST00000568472 ANKLE2Q86XL3 938 aa32.38■■■□□ 2.77
CLN3-234ENST00000568472 SPHKAPQ2M3C7 1700 aa32.37■■■□□ 2.77
CLN3-234ENST00000568472 PIK3C2BO00750 1634 aa32.37■■■□□ 2.77
CLN3-234ENST00000568472 UBR1Q8IWV7 1749 aa32.35■■■□□ 2.77
CLN3-234ENST00000568472 FOXD1Q16676 465 aa32.35■■■□□ 2.77
CLN3-234ENST00000568472 ADGRB3O60242 1522 aa32.34■■■□□ 2.77
CLN3-234ENST00000568472 HDGFP51858 240 aaKnown RBP32.32■■■□□ 2.76
CLN3-234ENST00000568472 EID1Q9Y6B2 187 aa32.32■■■□□ 2.76
CLN3-234ENST00000568472 TMEM2Q9UHN6 1383 aa32.32■■■□□ 2.76
CLN3-234ENST00000568472 CHGAP10645 457 aaKnown RBP32.31■■■□□ 2.76
CLN3-234ENST00000568472 NCKAP5LQ9HCH0 1330 aa32.3■■■□□ 2.76
CLN3-234ENST00000568472 SLIT1O75093 1534 aa32.3■■■□□ 2.76
CLN3-234ENST00000568472 ARHGAP23Q9P227 1491 aa32.29■■■□□ 2.76
CLN3-234ENST00000568472 CCDC144AA2RUR9 1427 aa32.27■■■□□ 2.76
CLN3-234ENST00000568472 TXNDC2Q86VQ3 553 aa32.27■■■□□ 2.76
CLN3-234ENST00000568472 TMEM131LA2VDJ0 1609 aa32.26■■■□□ 2.76
CLN3-234ENST00000568472 STRCQ7RTU9 1775 aa32.26■■■□□ 2.75
CLN3-234ENST00000568472 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.23■■■□□ 2.75
CLN3-234ENST00000568472 CLTCL1P53675 1640 aa32.22■■■□□ 2.75
CLN3-234ENST00000568472 PCGF6Q9BYE7 350 aa32.22■■■□□ 2.75
CLN3-234ENST00000568472 SCAF11Q99590 1463 aaKnown RBP32.22■■■□□ 2.75
CLN3-234ENST00000568472 ANKRD30BQ9BXX2 1392 aa32.21■■■□□ 2.75
CLN3-234ENST00000568472 MED14O60244 1454 aa32.21■■■□□ 2.75
CLN3-234ENST00000568472 LTKP29376 864 aa32.2■■■□□ 2.75
CLN3-234ENST00000568472 RIMS2Q9UQ26 1411 aa32.17■■■□□ 2.74
CLN3-234ENST00000568472 ZNF326Q5BKZ1 582 aaKnown RBP32.17■■■□□ 2.74
CLN3-234ENST00000568472 NPHP4O75161 1426 aaPredicted RBP32.17■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms