RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	POLR1A	O95602	1720 aa	Predicted RBP	18.43	■□□□□ 0.54
TCF4-238	ENST00000568169	DHX29	Q7Z478	1369 aa	Known RBP	18.41	■□□□□ 0.54
TCF4-238	ENST00000568169	CEP162	Q5TB80	1403 aa		18.4	■□□□□ 0.54
TCF4-238	ENST00000568169	FAM135A	Q9P2D6	1515 aa		18.38	■□□□□ 0.53
TCF4-238	ENST00000568169	NEURL4	Q96JN8	1562 aa		18.37	■□□□□ 0.53
TCF4-238	ENST00000568169	KDM5D	Q9BY66	1539 aa		18.35	■□□□□ 0.53
TCF4-238	ENST00000568169	PZP	P20742	1482 aa		18.35	■□□□□ 0.53
TCF4-238	ENST00000568169	CCDC141	Q6ZP82	1450 aa		18.35	■□□□□ 0.53
TCF4-238	ENST00000568169	TNR	Q92752	1358 aa		18.35	■□□□□ 0.53
TCF4-238	ENST00000568169	KIF3B	O15066	747 aa		18.35	■□□□□ 0.53
TCF4-238	ENST00000568169	FBXO31	Q5XUX0	539 aa	Predicted RBP	18.35	■□□□□ 0.53
TCF4-238	ENST00000568169	CPS1	P31327	1500 aa		18.33	■□□□□ 0.53
TCF4-238	ENST00000568169	RSPH4A	Q5TD94	716 aa		18.33	■□□□□ 0.52
TCF4-238	ENST00000568169	CAMSAP2	Q08AD1	1489 aa		18.33	■□□□□ 0.52
TCF4-238	ENST00000568169	NCOA2	Q15596	1464 aa		18.32	■□□□□ 0.52
TCF4-238	ENST00000568169	SHANK2	Q9UPX8	1470 aa		18.31	■□□□□ 0.52
TCF4-238	ENST00000568169	ARHGEF5	Q12774	1597 aa		18.3	■□□□□ 0.52
TCF4-238	ENST00000568169	WASHC2C	Q9Y4E1	1318 aa		18.29	■□□□□ 0.52
TCF4-238	ENST00000568169	DEPDC5	O75140	1603 aa		18.29	■□□□□ 0.52
TCF4-238	ENST00000568169	NLRP1	Q9C000	1473 aa		18.28	■□□□□ 0.52
TCF4-238	ENST00000568169	ANKLE2	Q86XL3	938 aa		18.28	■□□□□ 0.52
TCF4-238	ENST00000568169	MIA2	Q96PC5	1412 aa		18.28	■□□□□ 0.52
TCF4-238	ENST00000568169	VWDE	Q8N2E2	1590 aa		18.28	■□□□□ 0.52
TCF4-238	ENST00000568169	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	18.28	■□□□□ 0.52
TCF4-238	ENST00000568169	TOM1	O60784	492 aa		18.27	■□□□□ 0.52
TCF4-238	ENST00000568169	THEMIS	Q8N1K5	641 aa	Predicted RBP	18.27	■□□□□ 0.52
TCF4-238	ENST00000568169	CFAP65	Q6ZU64	1925 aa	Known RBP	18.27	■□□□□ 0.51
TCF4-238	ENST00000568169	MED14	O60244	1454 aa		18.26	■□□□□ 0.51
TCF4-238	ENST00000568169	UGGT1	Q9NYU2	1555 aa		18.26	■□□□□ 0.51
TCF4-238	ENST00000568169	HSPA1L	P34931	641 aa		18.26	■□□□□ 0.51
TCF4-238	ENST00000568169	RNF17	Q9BXT8	1623 aa	Known RBP	18.26	■□□□□ 0.51
TCF4-238	ENST00000568169	PIP4K2B	P78356	416 aa		18.24	■□□□□ 0.51
TCF4-238	ENST00000568169	MED1	Q15648	1581 aa	Predicted RBP	18.24	■□□□□ 0.51
TCF4-238	ENST00000568169	IQGAP1	P46940	1657 aa		18.24	■□□□□ 0.51
TCF4-238	ENST00000568169	SCAF1	Q9H7N4	1312 aa	Known RBP	18.23	■□□□□ 0.51
TCF4-238	ENST00000568169	NPHP4	O75161	1426 aa	Predicted RBP	18.23	■□□□□ 0.51
TCF4-238	ENST00000568169	ZC3H13	Q5T200	1668 aa	Known RBP	18.23	■□□□□ 0.51
TCF4-238	ENST00000568169	TSPY4	P0CV99	314 aa		18.23	■□□□□ 0.51
TCF4-238	ENST00000568169	TSPY10	P0CW01	314 aa		18.23	■□□□□ 0.51
TCF4-238	ENST00000568169	STRCP1	A6NGW2	1772 aa		18.22	■□□□□ 0.51
TCF4-238	ENST00000568169	MAST1	Q9Y2H9	1570 aa		18.22	■□□□□ 0.51
TCF4-238	ENST00000568169	ALK	Q9UM73	1620 aa		18.22	■□□□□ 0.51
TCF4-238	ENST00000568169	ABCC3	O15438	1527 aa		18.21	■□□□□ 0.51
TCF4-238	ENST00000568169	EIF2AK4	Q9P2K8	1649 aa	Known RBP	18.2	■□□□□ 0.5
TCF4-238	ENST00000568169	MROH1	Q8NDA8	1641 aa		18.18	■□□□□ 0.5
TCF4-238	ENST00000568169	CEP152	O94986	1710 aa		18.18	■□□□□ 0.5
TCF4-238	ENST00000568169	ERVK-7	P63135	1459 aa		18.17	■□□□□ 0.5
TCF4-238	ENST00000568169	LRRC9	Q6ZRR7	1453 aa		18.17	■□□□□ 0.5
TCF4-238	ENST00000568169	UBR1	Q8IWV7	1749 aa		18.16	■□□□□ 0.5
TCF4-238	ENST00000568169	LRRC7	Q96NW7	1537 aa		18.14	■□□□□ 0.49
TCF4-238	ENST00000568169	SYNM	O15061	1565 aa		18.14	■□□□□ 0.49
TCF4-238	ENST00000568169	ADRA2B	P18089	450 aa		18.13	■□□□□ 0.49
TCF4-238	ENST00000568169	VPS8	Q8N3P4	1428 aa		18.12	■□□□□ 0.49
TCF4-238	ENST00000568169	PIAS4	Q8N2W9	510 aa	Predicted RBP	18.11	■□□□□ 0.49
TCF4-238	ENST00000568169	XIRP1	Q702N8	1843 aa	Known RBP	18.1	■□□□□ 0.49
TCF4-238	ENST00000568169	MAP3K1	Q13233	1512 aa		18.1	■□□□□ 0.49
TCF4-238	ENST00000568169	DUOX2	Q9NRD8	1548 aa		18.1	■□□□□ 0.49
TCF4-238	ENST00000568169	MYOM3	Q5VTT5	1437 aa		18.09	■□□□□ 0.49
TCF4-238	ENST00000568169	SCAF11	Q99590	1463 aa	Known RBP	18.08	■□□□□ 0.49
TCF4-238	ENST00000568169	KANK4	Q5T7N3	995 aa	Predicted RBP	18.08	■□□□□ 0.48
TCF4-238	ENST00000568169	SLIT1	O75093	1534 aa		18.08	■□□□□ 0.48
TCF4-238	ENST00000568169	ARHGAP23	Q9P227	1491 aa		18.07	■□□□□ 0.48
TCF4-238	ENST00000568169	ARHGAP31	Q2M1Z3	1444 aa		18.06	■□□□□ 0.48
TCF4-238	ENST00000568169	PRDM15	P57071	1507 aa	Predicted RBP	18.06	■□□□□ 0.48
TCF4-238	ENST00000568169	CROCC2	H7BZ55	1655 aa		18.06	■□□□□ 0.48
TCF4-238	ENST00000568169	MSH5	O43196	834 aa		18.05	■□□□□ 0.48
TCF4-238	ENST00000568169	LTK	P29376	864 aa		18.05	■□□□□ 0.48
TCF4-238	ENST00000568169	TXNDC2	Q86VQ3	553 aa		18.04	■□□□□ 0.48
TCF4-238	ENST00000568169	PIK3C2B	O00750	1634 aa		18.02	■□□□□ 0.48
TCF4-238	ENST00000568169	KIF15	Q9NS87	1388 aa		18.02	■□□□□ 0.47
TCF4-238	ENST00000568169	ERBIN	Q96RT1	1412 aa		18.01	■□□□□ 0.47
TCF4-238	ENST00000568169	KDM5A	P29375	1690 aa	Known RBP	18.01	■□□□□ 0.47
TCF4-238	ENST00000568169	ABCC5	O15440	1437 aa		18	■□□□□ 0.47
TCF4-238	ENST00000568169	PTPN23	Q9H3S7	1636 aa		17.99	■□□□□ 0.47
TCF4-238	ENST00000568169	LOC105371045	A0A1W2PR82	267 aa		17.99	■□□□□ 0.47
TCF4-238	ENST00000568169	EID1	Q9Y6B2	187 aa		17.99	■□□□□ 0.47
TCF4-238	ENST00000568169	TMEM2	Q9UHN6	1383 aa		17.97	■□□□□ 0.47
TCF4-238	ENST00000568169	RRP7BP	Q9NSQ0	103 aa		17.97	■□□□□ 0.47
TCF4-238	ENST00000568169	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	17.95	■□□□□ 0.46
TCF4-238	ENST00000568169	KANK1	Q14678	1352 aa		17.94	■□□□□ 0.46
TCF4-238	ENST00000568169	EFCAB6	Q5THR3	1501 aa		17.94	■□□□□ 0.46
TCF4-238	ENST00000568169	RGS17	Q9UGC6	210 aa	Predicted RBP	17.94	■□□□□ 0.46
TCF4-238	ENST00000568169	DAPK1	P53355	1430 aa		17.94	■□□□□ 0.46
TCF4-238	ENST00000568169	FAM135B	Q49AJ0	1406 aa		17.94	■□□□□ 0.46
TCF4-238	ENST00000568169	LMTK2	Q8IWU2	1503 aa		17.93	■□□□□ 0.46
TCF4-238	ENST00000568169	TET3	O43151	1660 aa		17.93	■□□□□ 0.46
TCF4-238	ENST00000568169	IDI1	Q13907	227 aa		17.92	■□□□□ 0.46
TCF4-238	ENST00000568169	STAG3	Q9UJ98	1225 aa		17.92	■□□□□ 0.46
TCF4-238	ENST00000568169	KCNA6	P17658	529 aa		17.91	■□□□□ 0.46
TCF4-238	ENST00000568169	TMEM94	Q12767	1356 aa		17.91	■□□□□ 0.46
TCF4-238	ENST00000568169	NOS1	P29475	1434 aa		17.89	■□□□□ 0.46
TCF4-238	ENST00000568169	FGD6	Q6ZV73	1430 aa		17.89	■□□□□ 0.46
TCF4-238	ENST00000568169	ROBO1	Q9Y6N7	1651 aa		17.89	■□□□□ 0.45
TCF4-238	ENST00000568169	ANKRD30A	Q9BXX3	1397 aa		17.89	■□□□□ 0.45
TCF4-238	ENST00000568169	MYO5B	Q9ULV0	1848 aa		17.88	■□□□□ 0.45
TCF4-238	ENST00000568169	SLC26A8	Q96RN1	970 aa		17.87	■□□□□ 0.45
TCF4-238	ENST00000568169	ADGRB3	O60242	1522 aa		17.87	■□□□□ 0.45
TCF4-238	ENST00000568169	NWD1	Q149M9	1564 aa		17.87	■□□□□ 0.45
TCF4-238	ENST00000568169	PROSER2	Q86WR7	435 aa	Predicted RBP	17.86	■□□□□ 0.45
TCF4-238	ENST00000568169	CHD2	O14647	1828 aa	Known RBP	17.85	■□□□□ 0.45

Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms