RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	WASHC2C	Q9Y4E1	1318 aa		10.74	□□□□□ -0.69
SF3B3-209	ENST00000567635	PTPRK	Q15262	1439 aa		10.73	□□□□□ -0.69
SF3B3-209	ENST00000567635	FGD6	Q6ZV73	1430 aa		10.72	□□□□□ -0.69
SF3B3-209	ENST00000567635	ABCC5	O15440	1437 aa		10.71	□□□□□ -0.69
SF3B3-209	ENST00000567635	RRP7BP	Q9NSQ0	103 aa		10.71	□□□□□ -0.69
SF3B3-209	ENST00000567635	CROCC2	H7BZ55	1655 aa		10.7	□□□□□ -0.7
SF3B3-209	ENST00000567635	TCOF1	Q13428	1488 aa	Known RBP	10.7	□□□□□ -0.7
SF3B3-209	ENST00000567635	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.7	□□□□□ -0.7
SF3B3-209	ENST00000567635	KDM5D	Q9BY66	1539 aa		10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	DUOX2	Q9NRD8	1548 aa		10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	FAM135A	Q9P2D6	1515 aa		10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	MSH5	O43196	834 aa		10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	FAM50A	Q14320	339 aa	Known RBP	10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	FBXO41	Q8TF61	875 aa		10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	CHIC2	Q9UKJ5	165 aa		10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	DNMT1	P26358	1616 aa	Known RBP	10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	EIF2AK4	Q9P2K8	1649 aa	Known RBP	10.69	□□□□□ -0.7
SF3B3-209	ENST00000567635	DAPK1	P53355	1430 aa		10.68	□□□□□ -0.7
SF3B3-209	ENST00000567635	RNF17	Q9BXT8	1623 aa	Known RBP	10.68	□□□□□ -0.7
SF3B3-209	ENST00000567635	SHANK2	Q9UPX8	1470 aa		10.68	□□□□□ -0.7
SF3B3-209	ENST00000567635	PTPRT	O14522	1441 aa		10.67	□□□□□ -0.7
SF3B3-209	ENST00000567635	KIF15	Q9NS87	1388 aa		10.67	□□□□□ -0.7
SF3B3-209	ENST00000567635	CAMSAP1	Q5T5Y3	1602 aa		10.67	□□□□□ -0.7
SF3B3-209	ENST00000567635	CERK	Q8TCT0	537 aa		10.67	□□□□□ -0.7
SF3B3-209	ENST00000567635	NCOA1	Q15788	1441 aa		10.67	□□□□□ -0.7
SF3B3-209	ENST00000567635	ZNF142	P52746	1687 aa	Predicted RBP	10.66	□□□□□ -0.7
SF3B3-209	ENST00000567635	TNR	Q92752	1358 aa		10.66	□□□□□ -0.7
SF3B3-209	ENST00000567635	ANKRD30A	Q9BXX3	1397 aa		10.66	□□□□□ -0.7
SF3B3-209	ENST00000567635	MYO3A	Q8NEV4	1616 aa		10.66	□□□□□ -0.7
SF3B3-209	ENST00000567635	NCKAP5L	Q9HCH0	1330 aa		10.66	□□□□□ -0.7
SF3B3-209	ENST00000567635	PZP	P20742	1482 aa		10.66	□□□□□ -0.7
SF3B3-209	ENST00000567635	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.65	□□□□□ -0.7
SF3B3-209	ENST00000567635	PKD2	Q13563	968 aa		10.65	□□□□□ -0.7
SF3B3-209	ENST00000567635	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.65	□□□□□ -0.7	6e-9	■■□□□ 13.5
SF3B3-209	ENST00000567635	A2ML1	A8K2U0	1454 aa		10.65	□□□□□ -0.7
SF3B3-209	ENST00000567635	ZC3H13	Q5T200	1668 aa	Known RBP	10.65	□□□□□ -0.7
SF3B3-209	ENST00000567635	CEP152	O94986	1710 aa		10.64	□□□□□ -0.71
SF3B3-209	ENST00000567635	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.64	□□□□□ -0.71
SF3B3-209	ENST00000567635	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.64	□□□□□ -0.71
SF3B3-209	ENST00000567635	ERBIN	Q96RT1	1412 aa		10.64	□□□□□ -0.71
SF3B3-209	ENST00000567635	ABCC3	O15438	1527 aa		10.63	□□□□□ -0.71
SF3B3-209	ENST00000567635	MROH1	Q8NDA8	1641 aa		10.63	□□□□□ -0.71
SF3B3-209	ENST00000567635	PLA2R1	Q13018	1463 aa		10.62	□□□□□ -0.71
SF3B3-209	ENST00000567635	KANK1	Q14678	1352 aa		10.62	□□□□□ -0.71
SF3B3-209	ENST00000567635	NLRP1	Q9C000	1473 aa		10.61	□□□□□ -0.71
SF3B3-209	ENST00000567635	DEPDC5	O75140	1603 aa		10.6	□□□□□ -0.71
SF3B3-209	ENST00000567635	ANKLE2	Q86XL3	938 aa		10.6	□□□□□ -0.71
SF3B3-209	ENST00000567635	ADGRL2	O95490	1459 aa		10.6	□□□□□ -0.71
SF3B3-209	ENST00000567635	PRDM15	P57071	1507 aa	Predicted RBP	10.59	□□□□□ -0.71
SF3B3-209	ENST00000567635	POLR1A	O95602	1720 aa	Predicted RBP	10.59	□□□□□ -0.71
SF3B3-209	ENST00000567635	SPATA31D1	Q6ZQQ2	1576 aa		10.59	□□□□□ -0.71
SF3B3-209	ENST00000567635	ARHGAP31	Q2M1Z3	1444 aa		10.58	□□□□□ -0.72
SF3B3-209	ENST00000567635	UGGT1	Q9NYU2	1555 aa		10.58	□□□□□ -0.72
SF3B3-209	ENST00000567635	ERVK-7	P63135	1459 aa		10.58	□□□□□ -0.72
SF3B3-209	ENST00000567635	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	10.58	□□□□□ -0.72
SF3B3-209	ENST00000567635	ITGAE	P38570	1179 aa		10.57	□□□□□ -0.72
SF3B3-209	ENST00000567635	ANKRD50	Q9ULJ7	1429 aa		10.57	□□□□□ -0.72
SF3B3-209	ENST00000567635	LTBP4	Q8N2S1	1624 aa		10.56	□□□□□ -0.72
SF3B3-209	ENST00000567635	VWDE	Q8N2E2	1590 aa		10.56	□□□□□ -0.72
SF3B3-209	ENST00000567635	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.56	□□□□□ -0.72
SF3B3-209	ENST00000567635	ROCK1	Q13464	1354 aa		10.55	□□□□□ -0.72
SF3B3-209	ENST00000567635	UBR1	Q8IWV7	1749 aa		10.55	□□□□□ -0.72
SF3B3-209	ENST00000567635	LMTK2	Q8IWU2	1503 aa		10.54	□□□□□ -0.72
SF3B3-209	ENST00000567635	STAG3	Q9UJ98	1225 aa		10.54	□□□□□ -0.72
SF3B3-209	ENST00000567635	IDI1	Q13907	227 aa		10.53	□□□□□ -0.72
SF3B3-209	ENST00000567635	NEURL4	Q96JN8	1562 aa		10.52	□□□□□ -0.72
SF3B3-209	ENST00000567635	TXNDC2	Q86VQ3	553 aa		10.52	□□□□□ -0.73
SF3B3-209	ENST00000567635	EID1	Q9Y6B2	187 aa		10.52	□□□□□ -0.73
SF3B3-209	ENST00000567635	MED14	O60244	1454 aa		10.52	□□□□□ -0.73
SF3B3-209	ENST00000567635	IQSEC2	Q5JU85	1478 aa		10.52	□□□□□ -0.73
SF3B3-209	ENST00000567635	NPHP4	O75161	1426 aa	Predicted RBP	10.51	□□□□□ -0.73
SF3B3-209	ENST00000567635	SLC52A1	Q9NWF4	448 aa		10.51	□□□□□ -0.73
SF3B3-209	ENST00000567635	PIK3C2B	O00750	1634 aa		10.51	□□□□□ -0.73
SF3B3-209	ENST00000567635	TET3	O43151	1660 aa		10.5	□□□□□ -0.73
SF3B3-209	ENST00000567635	IQGAP1	P46940	1657 aa		10.5	□□□□□ -0.73
SF3B3-209	ENST00000567635	GCC2	Q8IWJ2	1684 aa		10.5	□□□□□ -0.73
SF3B3-209	ENST00000567635	EFCAB6	Q5THR3	1501 aa		10.5	□□□□□ -0.73
SF3B3-209	ENST00000567635	LTK	P29376	864 aa		10.5	□□□□□ -0.73
SF3B3-209	ENST00000567635	KDM5A	P29375	1690 aa	Known RBP	10.5	□□□□□ -0.73
SF3B3-209	ENST00000567635	NOS1	P29475	1434 aa		10.5	□□□□□ -0.73
SF3B3-209	ENST00000567635	RPRD2	Q5VT52	1461 aa	Known RBP	10.49	□□□□□ -0.73
SF3B3-209	ENST00000567635	UNC13B	O14795	1591 aa		10.49	□□□□□ -0.73
SF3B3-209	ENST00000567635	NUP155	O75694	1391 aa		10.49	□□□□□ -0.73
SF3B3-209	ENST00000567635	RRBP1	Q9P2E9	1410 aa	Known RBP	10.49	□□□□□ -0.73
SF3B3-209	ENST00000567635	SLIT1	O75093	1534 aa		10.48	□□□□□ -0.73
SF3B3-209	ENST00000567635	SYNM	O15061	1565 aa		10.48	□□□□□ -0.73
SF3B3-209	ENST00000567635	UBAP1L	F5GYI3	381 aa		10.48	□□□□□ -0.73
SF3B3-209	ENST00000567635	MYO5B	Q9ULV0	1848 aa		10.48	□□□□□ -0.73
SF3B3-209	ENST00000567635	TMEM2	Q9UHN6	1383 aa		10.48	□□□□□ -0.73
SF3B3-209	ENST00000567635	SCAF11	Q99590	1463 aa	Known RBP	10.48	□□□□□ -0.73
SF3B3-209	ENST00000567635	ARHGAP23	Q9P227	1491 aa		10.48	□□□□□ -0.73
SF3B3-209	ENST00000567635	CPS1	P31327	1500 aa		10.47	□□□□□ -0.73
SF3B3-209	ENST00000567635		E9PCH4	1651 aa		10.47	□□□□□ -0.73
SF3B3-209	ENST00000567635	HDGF	P51858	240 aa	Known RBP	10.46	□□□□□ -0.73
SF3B3-209	ENST00000567635	IQGAP3	Q86VI3	1631 aa		10.46	□□□□□ -0.74
SF3B3-209	ENST00000567635	STRCP1	A6NGW2	1772 aa		10.45	□□□□□ -0.74
SF3B3-209	ENST00000567635	TOM1	O60784	492 aa		10.44	□□□□□ -0.74
SF3B3-209	ENST00000567635	CHGA	P10645	457 aa	Known RBP	10.44	□□□□□ -0.74
SF3B3-209	ENST00000567635	BCAN	Q96GW7	911 aa		10.43	□□□□□ -0.74
SF3B3-209	ENST00000567635	ADGRB3	O60242	1522 aa		10.43	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms