RNA–Protein interactions for RNA: ENST00000567399.5

COMMD4-219, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 976 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-219ENST00000567399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.89■■□□□ 1.25
COMMD4-219ENST00000567399 ERBINQ96RT1 1412 aa22.89■■□□□ 1.25
COMMD4-219ENST00000567399 CNTLNQ9NXG0 1405 aa22.88■■□□□ 1.25
COMMD4-219ENST00000567399 ROCK1Q13464 1354 aa22.88■■□□□ 1.25
COMMD4-219ENST00000567399 CEBPAP49715 358 aaPredicted RBP22.87■■□□□ 1.25
COMMD4-219ENST00000567399 EIF2AK4Q9P2K8 1649 aaKnown RBP22.86■■□□□ 1.25
COMMD4-219ENST00000567399 ANKRD50Q9ULJ7 1429 aa22.84■■□□□ 1.25
COMMD4-219ENST00000567399 ZMYM3Q14202 1370 aa22.82■■□□□ 1.24
COMMD4-219ENST00000567399 KANK1Q14678 1352 aa22.82■■□□□ 1.24
COMMD4-219ENST00000567399 CLTCQ00610 1675 aaKnown RBP22.81■■□□□ 1.24
COMMD4-219ENST00000567399 RNF17Q9BXT8 1623 aaKnown RBP22.78■■□□□ 1.24
COMMD4-219ENST00000567399 KDM5DQ9BY66 1539 aa22.77■■□□□ 1.24
COMMD4-219ENST00000567399 FAM135AQ9P2D6 1515 aa22.74■■□□□ 1.23
COMMD4-219ENST00000567399 MROH2AA6NES4 1674 aa22.74■■□□□ 1.23
COMMD4-219ENST00000567399 C3P01024 1663 aa22.74■■□□□ 1.23
COMMD4-219ENST00000567399 ABCC3O15438 1527 aa22.7■■□□□ 1.22
COMMD4-219ENST00000567399 ZC3H13Q5T200 1668 aaKnown RBP22.69■■□□□ 1.22
COMMD4-219ENST00000567399 MROH1Q8NDA8 1641 aa22.69■■□□□ 1.22
COMMD4-219ENST00000567399 PRDM15P57071 1507 aaPredicted RBP22.69■■□□□ 1.22
COMMD4-219ENST00000567399 NAIPQ13075 1403 aa22.69■■□□□ 1.22
COMMD4-219ENST00000567399 DEPDC5O75140 1603 aa22.68■■□□□ 1.22
COMMD4-219ENST00000567399 TRIM52Q96A61 297 aa22.68■■□□□ 1.22
COMMD4-219ENST00000567399 HFM1A2PYH4 1435 aa22.67■■□□□ 1.22
COMMD4-219ENST00000567399 NUP155O75694 1391 aa22.67■■□□□ 1.22
COMMD4-219ENST00000567399 FBXO31Q5XUX0 539 aaPredicted RBP22.67■■□□□ 1.22
COMMD4-219ENST00000567399 CEP152O94986 1710 aa22.66■■□□□ 1.22
COMMD4-219ENST00000567399 NPATQ14207 1427 aa22.65■■□□□ 1.22
COMMD4-219ENST00000567399 UHRF1BP1Q6BDS2 1440 aa22.65■■□□□ 1.22
COMMD4-219ENST00000567399 PZPP20742 1482 aa22.64■■□□□ 1.21
COMMD4-219ENST00000567399 GCC2Q8IWJ2 1684 aa22.64■■□□□ 1.21
COMMD4-219ENST00000567399 CAMSAP1Q5T5Y3 1602 aa22.63■■□□□ 1.21
COMMD4-219ENST00000567399 UNC13BO14795 1591 aa22.61■■□□□ 1.21
COMMD4-219ENST00000567399 TNRQ92752 1358 aa22.61■■□□□ 1.21
COMMD4-219ENST00000567399 PREX1Q8TCU6 1659 aa22.59■■□□□ 1.21
COMMD4-219ENST00000567399 VWDEQ8N2E2 1590 aa22.59■■□□□ 1.21
COMMD4-219ENST00000567399 SETD5Q9C0A6 1442 aa22.58■■□□□ 1.21
COMMD4-219ENST00000567399 LMTK2Q8IWU2 1503 aa22.58■■□□□ 1.21
COMMD4-219ENST00000567399 HSPA2P54652 639 aa22.58■■□□□ 1.21
COMMD4-219ENST00000567399 SETD1BQ9UPS6 1966 aaKnown RBP22.57■■□□□ 1.2
COMMD4-219ENST00000567399 ARHGAP31Q2M1Z3 1444 aa22.57■■□□□ 1.2
COMMD4-219ENST00000567399 LMTK3Q96Q04 1460 aa22.56■■□□□ 1.2
COMMD4-219ENST00000567399 ACIN1Q9UKV3 1341 aaKnown RBP22.54■■□□□ 1.2
COMMD4-219ENST00000567399 ERVK-7P63135 1459 aa22.54■■□□□ 1.2
COMMD4-219ENST00000567399 IQGAP3Q86VI3 1631 aa22.53■■□□□ 1.2
COMMD4-219ENST00000567399 TET3O43151 1660 aa22.52■■□□□ 1.2
COMMD4-219ENST00000567399 EFCAB6Q5THR3 1501 aa22.52■■□□□ 1.2
COMMD4-219ENST00000567399 SLC4A1APQ9BWU0 796 aaKnown RBP22.52■■□□□ 1.2
COMMD4-219ENST00000567399 CFAP65Q6ZU64 1925 aaKnown RBP22.52■■□□□ 1.2
COMMD4-219ENST00000567399 TRIM26Q12899 539 aaPredicted RBP22.51■■□□□ 1.19
COMMD4-219ENST00000567399 STAG3Q9UJ98 1225 aa22.51■■□□□ 1.19
COMMD4-219ENST00000567399 SPATA31D1Q6ZQQ2 1576 aa22.5■■□□□ 1.19
COMMD4-219ENST00000567399 MYO3AQ8NEV4 1616 aa22.5■■□□□ 1.19
COMMD4-219ENST00000567399 RPRD2Q5VT52 1461 aaKnown RBP22.49■■□□□ 1.19
COMMD4-219ENST00000567399 RAB3GAP2Q9H2M9 1393 aa22.49■■□□□ 1.19
COMMD4-219ENST00000567399 NLRP1Q9C000 1473 aa22.48■■□□□ 1.19
COMMD4-219ENST00000567399 THEMISQ8N1K5 641 aaPredicted RBP22.47■■□□□ 1.19
COMMD4-219ENST00000567399 A2ML1A8K2U0 1454 aa22.47■■□□□ 1.19
COMMD4-219ENST00000567399 CEP170BQ9Y4F5 1589 aaPredicted RBP22.46■■□□□ 1.19
COMMD4-219ENST00000567399 PKD2Q13563 968 aa22.46■■□□□ 1.19
COMMD4-219ENST00000567399 SLC52A1Q9NWF4 448 aa22.44■■□□□ 1.18
COMMD4-219ENST00000567399 E9PCH4 1651 aa22.43■■□□□ 1.18
COMMD4-219ENST00000567399 IDI1Q13907 227 aa22.43■■□□□ 1.18
COMMD4-219ENST00000567399 MPHOSPH9Q99550 1183 aa22.43■■□□□ 1.18
COMMD4-219ENST00000567399 NOS1P29475 1434 aa22.42■■□□□ 1.18
COMMD4-219ENST00000567399 CHGAP10645 457 aaKnown RBP22.42■■□□□ 1.18
COMMD4-219ENST00000567399 UGGT1Q9NYU2 1555 aa22.42■■□□□ 1.18
COMMD4-219ENST00000567399 ZNF142P52746 1687 aaPredicted RBP22.4■■□□□ 1.18
COMMD4-219ENST00000567399 HRCP23327 699 aa22.39■■□□□ 1.17
COMMD4-219ENST00000567399 DMRT2Q9Y5R5 561 aa22.38■■□□□ 1.17
COMMD4-219ENST00000567399 NCKAP5LQ9HCH0 1330 aa22.37■■□□□ 1.17
COMMD4-219ENST00000567399 FOXD1Q16676 465 aa22.37■■□□□ 1.17
COMMD4-219ENST00000567399 SYNMO15061 1565 aa22.37■■□□□ 1.17
COMMD4-219ENST00000567399 ANKLE2Q86XL3 938 aa22.36■■□□□ 1.17
COMMD4-219ENST00000567399 PIK3C2BO00750 1634 aa22.34■■□□□ 1.17
COMMD4-219ENST00000567399 EID1Q9Y6B2 187 aa22.33■■□□□ 1.17
COMMD4-219ENST00000567399 PLA2R1Q13018 1463 aa22.32■■□□□ 1.16
COMMD4-219ENST00000567399 SPHKAPQ2M3C7 1700 aa22.31■■□□□ 1.16
COMMD4-219ENST00000567399 TXNDC2Q86VQ3 553 aa22.3■■□□□ 1.16
COMMD4-219ENST00000567399 UBR1Q8IWV7 1749 aa22.3■■□□□ 1.16
COMMD4-219ENST00000567399 PTPRTO14522 1441 aa22.3■■□□□ 1.16
COMMD4-219ENST00000567399 HDGFP51858 240 aaKnown RBP22.29■■□□□ 1.16
COMMD4-219ENST00000567399 ZNF326Q5BKZ1 582 aaKnown RBP22.28■■□□□ 1.16
COMMD4-219ENST00000567399 ADGRB3O60242 1522 aa22.27■■□□□ 1.16
COMMD4-219ENST00000567399 STRCQ7RTU9 1775 aa22.26■■□□□ 1.15
COMMD4-219ENST00000567399 PPP1R15AO75807 674 aaPredicted RBP22.26■■□□□ 1.15
COMMD4-219ENST00000567399 BCANQ96GW7 911 aa22.26■■□□□ 1.15
COMMD4-219ENST00000567399 TRPM2O94759 1503 aa22.26■■□□□ 1.15
COMMD4-219ENST00000567399 TMEM2Q9UHN6 1383 aa22.25■■□□□ 1.15
COMMD4-219ENST00000567399 KDM5AP29375 1690 aaKnown RBP22.23■■□□□ 1.15
COMMD4-219ENST00000567399 PCGF6Q9BYE7 350 aa22.23■■□□□ 1.15
COMMD4-219ENST00000567399 CCDC144AA2RUR9 1427 aa22.23■■□□□ 1.15
COMMD4-219ENST00000567399 LTKP29376 864 aa22.22■■□□□ 1.15
COMMD4-219ENST00000567399 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.21■■□□□ 1.15
COMMD4-219ENST00000567399 SCAF11Q99590 1463 aaKnown RBP22.21■■□□□ 1.15
COMMD4-219ENST00000567399 TMEM131LA2VDJ0 1609 aa22.2■■□□□ 1.15
COMMD4-219ENST00000567399 SLIT1O75093 1534 aa22.2■■□□□ 1.14
COMMD4-219ENST00000567399 CLTCL1P53675 1640 aa22.2■■□□□ 1.14
COMMD4-219ENST00000567399 NUTM2DQ5VT03 806 aaPredicted RBP22.19■■□□□ 1.14
COMMD4-219ENST00000567399 SENP3Q9H4L4 574 aaPredicted RBP22.19■■□□□ 1.14
COMMD4-219ENST00000567399 NPHP4O75161 1426 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms