RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 DEPDC5O75140 1603 aa18.47■□□□□ 0.55
SF3B3-208ENST00000567250 PTPRKQ15262 1439 aa18.47■□□□□ 0.55
SF3B3-208ENST00000567250 ITGAEP38570 1179 aa18.45■□□□□ 0.54
SF3B3-208ENST00000567250 CLTCQ00610 1675 aaKnown RBP18.44■□□□□ 0.54
SF3B3-208ENST00000567250 PRDM15P57071 1507 aaPredicted RBP18.44■□□□□ 0.54
SF3B3-208ENST00000567250 CNTLNQ9NXG0 1405 aa18.44■□□□□ 0.54
SF3B3-208ENST00000567250 MLECQ14165 292 aa18.44■□□□□ 0.54
SF3B3-208ENST00000567250 RRP7BPQ9NSQ0 103 aa18.44■□□□□ 0.54
SF3B3-208ENST00000567250 KDM5DQ9BY66 1539 aa18.44■□□□□ 0.54
SF3B3-208ENST00000567250 MROH1Q8NDA8 1641 aa18.42■□□□□ 0.54
SF3B3-208ENST00000567250 ANKRD50Q9ULJ7 1429 aa18.42■□□□□ 0.54
SF3B3-208ENST00000567250 ESF1Q9H501 851 aaKnown RBP18.42■□□□□ 0.54
SF3B3-208ENST00000567250 KDM4FA0A1W2PPD8 638 aa18.41■□□□□ 0.54
SF3B3-208ENST00000567250 KIF3BO15066 747 aa18.41■□□□□ 0.54
SF3B3-208ENST00000567250 UNC13BO14795 1591 aa18.4■□□□□ 0.54
SF3B3-208ENST00000567250 PPP6R1Q9UPN7 881 aa18.4■□□□□ 0.54
SF3B3-208ENST00000567250 C3P01024 1663 aa18.4■□□□□ 0.54
SF3B3-208ENST00000567250 PTPRMP28827 1452 aa18.39■□□□□ 0.54
SF3B3-208ENST00000567250 CEP152O94986 1710 aa18.39■□□□□ 0.53
SF3B3-208ENST00000567250 GGT6Q6P531 493 aa18.38■□□□□ 0.53
SF3B3-208ENST00000567250 HFM1A2PYH4 1435 aa18.37■□□□□ 0.53
SF3B3-208ENST00000567250 KANK1Q14678 1352 aa18.36■□□□□ 0.53
SF3B3-208ENST00000567250 CAMSAP1Q5T5Y3 1602 aa18.36■□□□□ 0.53
SF3B3-208ENST00000567250 ABCC3O15438 1527 aa18.34■□□□□ 0.53
SF3B3-208ENST00000567250 NAIPQ13075 1403 aa18.34■□□□□ 0.53
SF3B3-208ENST00000567250 VWDEQ8N2E2 1590 aa18.34■□□□□ 0.53
SF3B3-208ENST00000567250 IQGAP3Q86VI3 1631 aa18.32■□□□□ 0.52
SF3B3-208ENST00000567250 LMTK2Q8IWU2 1503 aa18.31■□□□□ 0.52
SF3B3-208ENST00000567250 TET3O43151 1660 aa18.31■□□□□ 0.52
SF3B3-208ENST00000567250 WASHC2CQ9Y4E1 1318 aa18.3■□□□□ 0.52
SF3B3-208ENST00000567250 PREX1Q8TCU6 1659 aa18.3■□□□□ 0.52
SF3B3-208ENST00000567250 PZPP20742 1482 aa18.28■□□□□ 0.52
SF3B3-208ENST00000567250 EFCAB6Q5THR3 1501 aa18.28■□□□□ 0.52
SF3B3-208ENST00000567250 ZMYM3Q14202 1370 aa18.27■□□□□ 0.51
SF3B3-208ENST00000567250 NPATQ14207 1427 aa18.26■□□□□ 0.51
SF3B3-208ENST00000567250 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.25■□□□□ 0.519e-8■■□□□ 13.5
SF3B3-208ENST00000567250 SETD1BQ9UPS6 1966 aaKnown RBP18.24■□□□□ 0.51
SF3B3-208ENST00000567250 MYO3AQ8NEV4 1616 aa18.24■□□□□ 0.51
SF3B3-208ENST00000567250 ACIN1Q9UKV3 1341 aaKnown RBP18.23■□□□□ 0.51
SF3B3-208ENST00000567250 ARHGAP31Q2M1Z3 1444 aa18.23■□□□□ 0.51
SF3B3-208ENST00000567250 ZNF142P52746 1687 aaPredicted RBP18.22■□□□□ 0.51
SF3B3-208ENST00000567250 RPRD2Q5VT52 1461 aaKnown RBP18.22■□□□□ 0.51
SF3B3-208ENST00000567250 ADRA2BP18089 450 aa18.22■□□□□ 0.51
SF3B3-208ENST00000567250 SETD5Q9C0A6 1442 aa18.22■□□□□ 0.51
SF3B3-208ENST00000567250 SPATA31D1Q6ZQQ2 1576 aa18.21■□□□□ 0.51
SF3B3-208ENST00000567250 NUP155O75694 1391 aa18.2■□□□□ 0.5
SF3B3-208ENST00000567250 E9PCH4 1651 aa18.2■□□□□ 0.5
SF3B3-208ENST00000567250 CEBPAP49715 358 aaPredicted RBP18.19■□□□□ 0.5
SF3B3-208ENST00000567250 UHRF1BP1Q6BDS2 1440 aa18.19■□□□□ 0.5
SF3B3-208ENST00000567250 ERVK-7P63135 1459 aa18.19■□□□□ 0.5
SF3B3-208ENST00000567250 CFAP65Q6ZU64 1925 aaKnown RBP18.18■□□□□ 0.5
SF3B3-208ENST00000567250 TRIM26Q12899 539 aaPredicted RBP18.16■□□□□ 0.5
SF3B3-208ENST00000567250 CEP170BQ9Y4F5 1589 aaPredicted RBP18.16■□□□□ 0.5
SF3B3-208ENST00000567250 SPHKAPQ2M3C7 1700 aa18.15■□□□□ 0.5
SF3B3-208ENST00000567250 TNRQ92752 1358 aa18.15■□□□□ 0.5
SF3B3-208ENST00000567250 RAB3GAP2Q9H2M9 1393 aa18.15■□□□□ 0.5
SF3B3-208ENST00000567250 LMTK3Q96Q04 1460 aa18.14■□□□□ 0.49
SF3B3-208ENST00000567250 NLRP1Q9C000 1473 aa18.14■□□□□ 0.49
SF3B3-208ENST00000567250 TRIM52Q96A61 297 aa18.13■□□□□ 0.49
SF3B3-208ENST00000567250 SYNMO15061 1565 aa18.12■□□□□ 0.49
SF3B3-208ENST00000567250 KDM5AP29375 1690 aaKnown RBP18.11■□□□□ 0.49
SF3B3-208ENST00000567250 A2ML1A8K2U0 1454 aa18.1■□□□□ 0.49
SF3B3-208ENST00000567250 NOS1P29475 1434 aa18.1■□□□□ 0.49
SF3B3-208ENST00000567250 FBXO31Q5XUX0 539 aaPredicted RBP18.08■□□□□ 0.48
SF3B3-208ENST00000567250 PIK3C2BO00750 1634 aa18.08■□□□□ 0.48
SF3B3-208ENST00000567250 UBR1Q8IWV7 1749 aa18.07■□□□□ 0.48
SF3B3-208ENST00000567250 HRCP23327 699 aa18.07■□□□□ 0.48
SF3B3-208ENST00000567250 TRPM2O94759 1503 aa18.07■□□□□ 0.48
SF3B3-208ENST00000567250 UGGT1Q9NYU2 1555 aa18.06■□□□□ 0.48
SF3B3-208ENST00000567250 SLC4A1APQ9BWU0 796 aaKnown RBP18.06■□□□□ 0.48
SF3B3-208ENST00000567250 ADGRB3O60242 1522 aa18.04■□□□□ 0.48
SF3B3-208ENST00000567250 POLR1AO95602 1720 aaPredicted RBP18.03■□□□□ 0.48
SF3B3-208ENST00000567250 KIF1BO60333 1816 aa18.02■□□□□ 0.47
SF3B3-208ENST00000567250 PLA2R1Q13018 1463 aa18.01■□□□□ 0.47
SF3B3-208ENST00000567250 PTPRTO14522 1441 aa18.01■□□□□ 0.47
SF3B3-208ENST00000567250 SLC52A1Q9NWF4 448 aa18.01■□□□□ 0.47
SF3B3-208ENST00000567250 PKD2Q13563 968 aa18■□□□□ 0.47
SF3B3-208ENST00000567250 CLTCL1P53675 1640 aa17.99■□□□□ 0.47
SF3B3-208ENST00000567250 MPHOSPH9Q99550 1183 aa17.99■□□□□ 0.47
SF3B3-208ENST00000567250 MYO5BQ9ULV0 1848 aa17.99■□□□□ 0.47
SF3B3-208ENST00000567250 TMEM131LA2VDJ0 1609 aa17.98■□□□□ 0.47
SF3B3-208ENST00000567250 STRCQ7RTU9 1775 aa17.96■□□□□ 0.47
SF3B3-208ENST00000567250 HSPA2P54652 639 aa17.95■□□□□ 0.46
SF3B3-208ENST00000567250 THEMISQ8N1K5 641 aaPredicted RBP17.95■□□□□ 0.46
SF3B3-208ENST00000567250 STAG3Q9UJ98 1225 aa17.95■□□□□ 0.46
SF3B3-208ENST00000567250 SLIT1O75093 1534 aa17.94■□□□□ 0.46
SF3B3-208ENST00000567250 CCDC144AA2RUR9 1427 aa17.94■□□□□ 0.46
SF3B3-208ENST00000567250 IDI1Q13907 227 aa17.93■□□□□ 0.46
SF3B3-208ENST00000567250 ARHGAP23Q9P227 1491 aa17.91■□□□□ 0.46
SF3B3-208ENST00000567250 NEURL4Q96JN8 1562 aa17.9■□□□□ 0.46
SF3B3-208ENST00000567250 IQGAP1P46940 1657 aa17.9■□□□□ 0.46
SF3B3-208ENST00000567250 SCAF11Q99590 1463 aaKnown RBP17.88■□□□□ 0.45
SF3B3-208ENST00000567250 TMEM2Q9UHN6 1383 aa17.88■□□□□ 0.45
SF3B3-208ENST00000567250 PCGF6Q9BYE7 350 aa17.87■□□□□ 0.45
SF3B3-208ENST00000567250 CHGAP10645 457 aaKnown RBP17.86■□□□□ 0.45
SF3B3-208ENST00000567250 DMRT2Q9Y5R5 561 aa17.86■□□□□ 0.45
SF3B3-208ENST00000567250 MED14O60244 1454 aa17.85■□□□□ 0.45
SF3B3-208ENST00000567250 ANKLE2Q86XL3 938 aa17.85■□□□□ 0.45
SF3B3-208ENST00000567250 PPLO60437 1756 aa17.84■□□□□ 0.45
SF3B3-208ENST00000567250 IFT172Q9UG01 1749 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms