RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MROH1Q8NDA8 1641 aa29.76■■■□□ 2.36
CLN3-225ENST00000566824 CLTCQ00610 1675 aaKnown RBP29.76■■■□□ 2.35
CLN3-225ENST00000566824 PLPPR3Q6T4P5 718 aa29.73■■■□□ 2.35
CLN3-225ENST00000566824 CEBPAP49715 358 aaPredicted RBP29.71■■■□□ 2.35
CLN3-225ENST00000566824 C3P01024 1663 aa29.7■■■□□ 2.35
CLN3-225ENST00000566824 ANKRD50Q9ULJ7 1429 aa29.7■■■□□ 2.34
CLN3-225ENST00000566824 DEPDC5O75140 1603 aa29.68■■■□□ 2.34
CLN3-225ENST00000566824 MROH2AA6NES4 1674 aa29.67■■■□□ 2.34
CLN3-225ENST00000566824 ESF1Q9H501 851 aaKnown RBP29.65■■■□□ 2.34
CLN3-225ENST00000566824 CEP152O94986 1710 aa29.64■■■□□ 2.34
CLN3-225ENST00000566824 CNTLNQ9NXG0 1405 aa29.64■■■□□ 2.34
CLN3-225ENST00000566824 KDM5DQ9BY66 1539 aa29.64■■■□□ 2.34
CLN3-225ENST00000566824 PRDM15P57071 1507 aaPredicted RBP29.63■■■□□ 2.33
CLN3-225ENST00000566824 ABCC3O15438 1527 aa29.62■■■□□ 2.33
CLN3-225ENST00000566824 GCC2Q8IWJ2 1684 aa29.62■■■□□ 2.33
CLN3-225ENST00000566824 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.62■■■□□ 2.33
CLN3-225ENST00000566824 PPP6R1Q9UPN7 881 aa29.62■■■□□ 2.33
CLN3-225ENST00000566824 NAIPQ13075 1403 aa29.62■■■□□ 2.33
CLN3-225ENST00000566824 ZMYM3Q14202 1370 aa29.61■■■□□ 2.33
CLN3-225ENST00000566824 WASHC2CQ9Y4E1 1318 aa29.6■■■□□ 2.33
CLN3-225ENST00000566824 VWDEQ8N2E2 1590 aa29.57■■■□□ 2.32
CLN3-225ENST00000566824 ZC3H13Q5T200 1668 aaKnown RBP29.57■■■□□ 2.32
CLN3-225ENST00000566824 FAM135AQ9P2D6 1515 aa29.57■■■□□ 2.32
CLN3-225ENST00000566824 HFM1A2PYH4 1435 aa29.56■■■□□ 2.32
CLN3-225ENST00000566824 UNC13BO14795 1591 aa29.55■■■□□ 2.32
CLN3-225ENST00000566824 CAMSAP1Q5T5Y3 1602 aa29.54■■■□□ 2.32
CLN3-225ENST00000566824 CFAP65Q6ZU64 1925 aaKnown RBP29.51■■■□□ 2.31
CLN3-225ENST00000566824 FBXO31Q5XUX0 539 aaPredicted RBP29.49■■■□□ 2.31
CLN3-225ENST00000566824 KANK1Q14678 1352 aa29.47■■■□□ 2.31
CLN3-225ENST00000566824 PZPP20742 1482 aa29.47■■■□□ 2.31
CLN3-225ENST00000566824 LMTK2Q8IWU2 1503 aa29.46■■■□□ 2.31
CLN3-225ENST00000566824 SETD1BQ9UPS6 1966 aaKnown RBP29.45■■■□□ 2.31
CLN3-225ENST00000566824 PREX1Q8TCU6 1659 aa29.44■■■□□ 2.3
CLN3-225ENST00000566824 IQGAP3Q86VI3 1631 aa29.43■■■□□ 2.3
CLN3-225ENST00000566824 NPATQ14207 1427 aa29.43■■■□□ 2.3
CLN3-225ENST00000566824 LMTK3Q96Q04 1460 aa29.42■■■□□ 2.3
CLN3-225ENST00000566824 NUP155O75694 1391 aa29.41■■■□□ 2.3
CLN3-225ENST00000566824 EFCAB6Q5THR3 1501 aa29.4■■■□□ 2.3
CLN3-225ENST00000566824 TET3O43151 1660 aa29.39■■■□□ 2.3
CLN3-225ENST00000566824 ARHGAP31Q2M1Z3 1444 aa29.39■■■□□ 2.29
CLN3-225ENST00000566824 MYO3AQ8NEV4 1616 aa29.37■■■□□ 2.29
CLN3-225ENST00000566824 ERVK-7P63135 1459 aa29.36■■■□□ 2.29
CLN3-225ENST00000566824 SPATA31D1Q6ZQQ2 1576 aa29.35■■■□□ 2.29
CLN3-225ENST00000566824 SETD5Q9C0A6 1442 aa29.35■■■□□ 2.29
CLN3-225ENST00000566824 E9PCH4 1651 aa29.34■■■□□ 2.29
CLN3-225ENST00000566824 TNRQ92752 1358 aa29.34■■■□□ 2.29
CLN3-225ENST00000566824 HSPA2P54652 639 aa29.32■■■□□ 2.28
CLN3-225ENST00000566824 UHRF1BP1Q6BDS2 1440 aa29.32■■■□□ 2.28
CLN3-225ENST00000566824 TRIM52Q96A61 297 aa29.3■■■□□ 2.28
CLN3-225ENST00000566824 RAB3GAP2Q9H2M9 1393 aa29.28■■■□□ 2.28
CLN3-225ENST00000566824 ZNF142P52746 1687 aaPredicted RBP29.28■■■□□ 2.28
CLN3-225ENST00000566824 SYNMO15061 1565 aa29.27■■■□□ 2.28
CLN3-225ENST00000566824 CEP170BQ9Y4F5 1589 aaPredicted RBP29.26■■■□□ 2.27
CLN3-225ENST00000566824 NOS1P29475 1434 aa29.24■■■□□ 2.27
CLN3-225ENST00000566824 RPRD2Q5VT52 1461 aaKnown RBP29.23■■■□□ 2.27
CLN3-225ENST00000566824 A2ML1A8K2U0 1454 aa29.22■■■□□ 2.27
CLN3-225ENST00000566824 NLRP1Q9C000 1473 aa29.19■■■□□ 2.26
CLN3-225ENST00000566824 TRIM26Q12899 539 aaPredicted RBP29.19■■■□□ 2.26
CLN3-225ENST00000566824 PIK3C2BO00750 1634 aa29.17■■■□□ 2.26
CLN3-225ENST00000566824 UGGT1Q9NYU2 1555 aa29.16■■■□□ 2.26
CLN3-225ENST00000566824 PKD2Q13563 968 aa29.16■■■□□ 2.26
CLN3-225ENST00000566824 SLC4A1APQ9BWU0 796 aaKnown RBP29.16■■■□□ 2.26
CLN3-225ENST00000566824 SPHKAPQ2M3C7 1700 aa29.15■■■□□ 2.26
CLN3-225ENST00000566824 STRCQ7RTU9 1775 aa29.14■■■□□ 2.26
CLN3-225ENST00000566824 UBR1Q8IWV7 1749 aa29.14■■■□□ 2.26
CLN3-225ENST00000566824 IDI1Q13907 227 aa29.13■■■□□ 2.25
CLN3-225ENST00000566824 FOXD1Q16676 465 aa29.13■■■□□ 2.25
CLN3-225ENST00000566824 MPHOSPH9Q99550 1183 aa29.12■■■□□ 2.25
CLN3-225ENST00000566824 PTPRTO14522 1441 aa29.1■■■□□ 2.25
CLN3-225ENST00000566824 PLA2R1Q13018 1463 aa29.1■■■□□ 2.25
CLN3-225ENST00000566824 MYO5BQ9ULV0 1848 aa29.08■■■□□ 2.25
CLN3-225ENST00000566824 HRCP23327 699 aa29.06■■■□□ 2.24
CLN3-225ENST00000566824 SLC52A1Q9NWF4 448 aa29.03■■■□□ 2.24
CLN3-225ENST00000566824 CLTCL1P53675 1640 aa29.03■■■□□ 2.24
CLN3-225ENST00000566824 NCKAP5LQ9HCH0 1330 aa29.03■■■□□ 2.24
CLN3-225ENST00000566824 TRPM2O94759 1503 aa29.03■■■□□ 2.24
CLN3-225ENST00000566824 ADGRB3O60242 1522 aa29.02■■■□□ 2.24
CLN3-225ENST00000566824 TMEM131LA2VDJ0 1609 aa29.01■■■□□ 2.24
CLN3-225ENST00000566824 THEMISQ8N1K5 641 aaPredicted RBP29.01■■■□□ 2.23
CLN3-225ENST00000566824 KDM5AP29375 1690 aaKnown RBP29.01■■■□□ 2.23
CLN3-225ENST00000566824 ACIN1Q9UKV3 1341 aaKnown RBP28.99■■■□□ 2.23
CLN3-225ENST00000566824 POLR1AO95602 1720 aaPredicted RBP28.98■■■□□ 2.23
CLN3-225ENST00000566824 NEURL4Q96JN8 1562 aa28.95■■■□□ 2.23
CLN3-225ENST00000566824 STAG3Q9UJ98 1225 aa28.95■■■□□ 2.23
CLN3-225ENST00000566824 ARHGAP23Q9P227 1491 aa28.95■■■□□ 2.22
CLN3-225ENST00000566824 SLIT1O75093 1534 aa28.94■■■□□ 2.22
CLN3-225ENST00000566824 CHGAP10645 457 aaKnown RBP28.94■■■□□ 2.22
CLN3-225ENST00000566824 TMEM2Q9UHN6 1383 aa28.91■■■□□ 2.22
CLN3-225ENST00000566824 LTKP29376 864 aa28.91■■■□□ 2.22
CLN3-225ENST00000566824 KIF1BO60333 1816 aa28.9■■■□□ 2.22
CLN3-225ENST00000566824 ANKLE2Q86XL3 938 aa28.89■■■□□ 2.21
CLN3-225ENST00000566824 PCGF6Q9BYE7 350 aa28.87■■■□□ 2.21
CLN3-225ENST00000566824 ZFYVE9O95405 1425 aa28.85■■■□□ 2.21
CLN3-225ENST00000566824 TXNDC2Q86VQ3 553 aa28.85■■■□□ 2.21
CLN3-225ENST00000566824 SCAF11Q99590 1463 aaKnown RBP28.85■■■□□ 2.21
CLN3-225ENST00000566824 ANKRD30BQ9BXX2 1392 aa28.84■■■□□ 2.21
CLN3-225ENST00000566824 RIMS2Q9UQ26 1411 aa28.83■■■□□ 2.21
CLN3-225ENST00000566824 MED14O60244 1454 aa28.82■■■□□ 2.2
CLN3-225ENST00000566824 CCDC144AA2RUR9 1427 aa28.82■■■□□ 2.2
CLN3-225ENST00000566824 NUTM2DQ5VT03 806 aaPredicted RBP28.81■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms